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Nipam Patel

TitleProfessor
InstitutionUniversity of Chicago
DepartmentOrg.Bio./Anatomy
AddressChicago IL 60637
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    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Sun DA, Patel NH. The amphipod crustacean Parhyale hawaiensis: An emerging comparative model of arthropod development, evolution, and regeneration. Wiley Interdiscip Rev Dev Biol. 2019 Sep; 8(5):e355. PMID: 31183976.
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    2. Krehenwinkel H, Pomerantz A, Henderson JB, Kennedy SR, Lim JY, Swamy V, Shoobridge JD, Graham N, Patel NH, Gillespie RG, Prost S. Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale. Gigascience. 2019 05 01; 8(5). PMID: 30824940.
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    3. Allen FI, Velez NR, Thayer RC, Patel NH, Jones MA, Meyers GF, Minor AM. Gallium, neon and helium focused ion beam milling of thin films demonstrated for polymeric materials: study of implantation artifacts. Nanoscale. 2019 Jan 17; 11(3):1403-1409. PMID: 30604814.
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    4. Xu J, Patel NH, Saleh T, Cudjoe EK, Alotaibi M, Wu Y, Lima S, Hawkridge AM, Gewirtz DA. Differential Radiation Sensitivity in p53 Wild-Type and p53-Deficient Tumor Cells Associated with Senescence but not Apoptosis or (Nonprotective) Autophagy. Radiat Res. 2018 11; 190(5):538-557. PMID: 30132722.
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    5. Farboud B, Jarvis E, Roth TL, Shin J, Corn JE, Marson A, Meyer BJ, Patel NH, Hochstrasser ML. Enhanced Genome Editing with Cas9 Ribonucleoprotein in Diverse Cells and Organisms. J Vis Exp. 2018 05 25; (135). PMID: 29889198.
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    6. Curry ZA, Wilkerson JL, Bagdas D, Kyte SL, Patel N, Donvito G, Mustafa MA, Poklis JL, Niphakis MJ, Hsu KL, Cravatt BF, Gewirtz DA, Damaj MI, Lichtman AH. Monoacylglycerol Lipase Inhibitors Reverse Paclitaxel-Induced Nociceptive Behavior and Proinflammatory Markers in a Mouse Model of Chemotherapy-Induced Neuropathy. J Pharmacol Exp Ther. 2018 07; 366(1):169-183. PMID: 29540562.
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    7. Mazo-Vargas A, Concha C, Livraghi L, Massardo D, Wallbank RWR, Zhang L, Papador JD, Martinez-Najera D, Jiggins CD, Kronforst MR, Breuker CJ, Reed RD, Patel NH, McMillan WO, Martin A. Macroevolutionary shifts of WntA function potentiate butterfly wing-pattern diversity. Proc Natl Acad Sci U S A. 2017 10 03; 114(40):10701-10706. PMID: 28923954.
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    8. Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N, Jarvis E, Di Donfrancesco A, Pouchkina-Stancheva N, Sémon M, Grillo M, Bruce H, Kumar S, Siwanowicz I, Le A, Lemire A, Eisen MB, Extavour C, Browne WE, Wolff C, Averof M, Patel NH, Sarkies P, Pavlopoulos A, Aboobaker A. The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion. Elife. 2016 11 16; 5. PMID: 27849518.
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    9. Battelle BA, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx PJ, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter ML. Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata). Genome Biol Evol. 2016 06 03; 8(5):1571-89. PMID: 27189985.
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    10. Patel N, Vicente C. An interview with Nipam Patel. Development. 2015 Dec 15; 142(24):4189-90. PMID: 26672091.
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    11. Martin A, Serano JM, Jarvis E, Bruce HS, Wang J, Ray S, Barker CA, O'Connell LC, Patel NH. CRISPR/Cas9 Mutagenesis Reveals Versatile Roles of Hox Genes in Crustacean Limb Specification and Evolution. Curr Biol. 2016 Jan 11; 26(1):14-26. PMID: 26687626.
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    12. Serano JM, Martin A, Liubicich DM, Jarvis E, Bruce HS, La K, Browne WE, Grimwood J, Patel NH. Comprehensive analysis of Hox gene expression in the amphipod crustacean Parhyale hawaiensis. Dev Biol. 2016 Jan 01; 409(1):297-309. PMID: 26569556.
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    13. Stahl BA, Gross JB, Speiser DI, Oakley TH, Patel NH, Gould DB, Protas ME. A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus. PLoS One. 2015; 10(10):e0140484. PMID: 26462237.
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    14. Rebeiz M, Patel NH, Hinman VF. Unraveling the Tangled Skein: The Evolution of Transcriptional Regulatory Networks in Development. Annu Rev Genomics Hum Genet. 2015; 16:103-31. PMID: 26079281.
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    15. Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH. Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC Bioinformatics. 2014 Nov 19; 15:350. PMID: 25407802.
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    16. Dinwiddie A, Null R, Pizzano M, Chuong L, Leigh Krup A, Ee Tan H, Patel NH. Dynamics of F-actin prefigure the structure of butterfly wing scales. Dev Biol. 2014 Aug 15; 392(2):404-18. PMID: 24930704.
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    17. Martin A, McCulloch KJ, Patel NH, Briscoe AD, Gilbert LE, Reed RD. Multiple recent co-options of Optix associated with novel traits in adaptive butterfly wing radiations. Evodevo. 2014 Feb 05; 5(1):7. PMID: 24499528.
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    18. Hannibal RL, Patel NH. What is a segment? Evodevo. 2013 Dec 17; 4(1):35. PMID: 24345042.
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    19. Chaw RC, Patel NH. Independent migration of cell populations in the early gastrulation of the amphipod crustacean Parhyale hawaiensis. Dev Biol. 2012 Nov 01; 371(1):94-109. PMID: 23046627.
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    20. Patel NH. Evolutionary crossroads in developmental biology. Development. 2012 Aug; 139(15):2637-8. PMID: 22782717.
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    21. Jarvis E, Bruce HS, Patel NH. Evolving specialization of the arthropod nervous system. Proc Natl Acad Sci U S A. 2012 Jun 26; 109 Suppl 1:10634-9. PMID: 22723369.
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    22. Hannibal RL, Price AL, Parchem RJ, Patel NH. Analysis of snail genes in the crustacean Parhyale hawaiensis: insight into snail gene family evolution. Dev Genes Evol. 2012 May; 222(3):139-51. PMID: 22466422.
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    23. Cheng YJ, Fang S, Tsaur SC, Chen YL, Fu HW, Patel NH, Ting CT. Reduction of germ cells in the Odysseus null mutant causes male fertility defect in Drosophila melanogaster. Genes Genet Syst. 2012; 87(4):273-6. PMID: 23229314.
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    24. Hannibal RL, Price AL, Patel NH. The functional relationship between ectodermal and mesodermal segmentation in the crustacean, Parhyale hawaiensis. Dev Biol. 2012 Jan 15; 361(2):427-38. PMID: 22037675.
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    25. Protas ME, Trontelj P, Patel NH. Genetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus. Proc Natl Acad Sci U S A. 2011 Apr 05; 108(14):5702-7. PMID: 21422298.
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    26. Vargas-Vila MA, Hannibal RL, Parchem RJ, Liu PZ, Patel NH. A prominent requirement for single-minded and the ventral midline in patterning the dorsoventral axis of the crustacean Parhyale hawaiensis. Development. 2010 Oct; 137(20):3469-76. PMID: 20843860.
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    27. Parchem RJ, Poulin F, Stuart AB, Amemiya CT, Patel NH. BAC library for the amphipod crustacean, Parhyale hawaiensis. Genomics. 2010 May; 95(5):261-7. PMID: 20298775.
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    28. Liu PZ, Patel NH. giant is a bona fide gap gene in the intermediate germband insect, Oncopeltus fasciatus. Development. 2010 Mar; 137(5):835-44. PMID: 20147384.
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    29. Price AL, Modrell MS, Hannibal RL, Patel NH. Mesoderm and ectoderm lineages in the crustacean Parhyale hawaiensis display intra-germ layer compensation. Dev Biol. 2010 May 01; 341(1):256-66. PMID: 20005872.
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    30. Patel NH. Developmental biology: Asymmetry with a twist. Nature. 2009 Dec 10; 462(7274):727-8. PMID: 20010672.
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    31. Pavlopoulos A, Kontarakis Z, Liubicich DM, Serano JM, Akam M, Patel NH, Averof M. Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean. Proc Natl Acad Sci U S A. 2009 Aug 18; 106(33):13897-902. PMID: 19666530.
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    32. Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH. Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology. Proc Natl Acad Sci U S A. 2009 Aug 18; 106(33):13892-6. PMID: 19666517.
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    33. Rehm EJ, Hannibal RL, Chaw RC, Vargas-Vila MA, Patel NH. Antibody staining of Parhyale hawaiensis embryos. Cold Spring Harb Protoc. 2009 Jan; 2009(1):pdb.prot5129. PMID: 20147024.
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    34. Rehm EJ, Hannibal RL, Chaw RC, Vargas-Vila MA, Patel NH. Injection of Parhyale hawaiensis blastomeres with fluorescently labeled tracers. Cold Spring Harb Protoc. 2009 Jan; 2009(1):pdb.prot5128. PMID: 20147023.
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    35. Rehm EJ, Hannibal RL, Chaw RC, Vargas-Vila MA, Patel NH. In situ hybridization of labeled RNA probes to fixed Parhyale hawaiensis embryos. Cold Spring Harb Protoc. 2009 Jan; 2009(1):pdb.prot5130. PMID: 20147025.
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    36. Rehm EJ, Hannibal RL, Chaw RC, Vargas-Vila MA, Patel NH. Fixation and dissection of Parhyale hawaiensis embryos. Cold Spring Harb Protoc. 2009 Jan; 2009(1):pdb.prot5127. PMID: 20147022.
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    37. Rehm EJ, Hannibal RL, Chaw RC, Vargas-Vila MA, Patel NH. The crustacean Parhyale hawaiensis: a new model for arthropod development. Cold Spring Harb Protoc. 2009 Jan; 2009(1):pdb.emo114. PMID: 20147009.
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    38. Teichmann S, Patel NH. Genomes and evolution: multidimensional approaches to understanding diversity. Curr Opin Genet Dev. 2008 Dec; 18(6):469-71. PMID: 19109008.
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    39. Grande C, Patel NH. Nodal signalling is involved in left-right asymmetry in snails. Nature. 2009 Feb 19; 457(7232):1007-11. PMID: 19098895.
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    40. Stillman JH, Colbourne JK, Lee CE, Patel NH, Phillips MR, Towle DW, Eads BD, Gelembuik GW, Henry RP, Johnson EA, Pfrender ME, Terwilliger NB. Recent advances in crustacean genomics. Integr Comp Biol. 2008 Dec; 48(6):852-68. PMID: 21669837.
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    41. VanHook AM, Patel NH. Crustaceans. Curr Biol. 2008 Jul 08; 18(13):R547-50. PMID: 18606120.
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    42. Price AL, Patel NH. Investigating divergent mechanisms of mesoderm development in arthropods: the expression of Ph-twist and Ph-mef2 in Parhyale hawaiensis. J Exp Zool B Mol Dev Evol. 2008 Jan 15; 310(1):24-40. PMID: 17152085.
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    43. Protas ME, Patel NH. Evolution of coloration patterns. Annu Rev Cell Dev Biol. 2008; 24:425-46. PMID: 18593352.
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    44. Parchem RJ, Perry MW, Patel NH. Patterns on the insect wing. Curr Opin Genet Dev. 2007 Aug; 17(4):300-8. PMID: 17627807.
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    45. Patel NH. Evolutionary biology: how to build a longer beak. Nature. 2006 Aug 03; 442(7102):515-6. PMID: 16885968.
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    46. Aboobaker AA, Tomancak P, Patel N, Rubin GM, Lai EC. Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development. Proc Natl Acad Sci U S A. 2005 Dec 13; 102(50):18017-22. PMID: 16330759.
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    47. Davis GK, D'Alessio JA, Patel NH. Pax3/7 genes reveal conservation and divergence in the arthropod segmentation hierarchy. Dev Biol. 2005 Sep 01; 285(1):169-84. PMID: 16083872.
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    48. Browne WE, Price AL, Gerberding M, Patel NH. Stages of embryonic development in the amphipod crustacean, Parhyale hawaiensis. Genesis. 2005 Jul; 42(3):124-49. PMID: 15986449.
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    49. Lucchetta EM, Lee JH, Fu LA, Patel NH, Ismagilov RF. Dynamics of Drosophila embryonic patterning network perturbed in space and time using microfluidics. Nature. 2005 Apr 28; 434(7037):1134-8. PMID: 15858575.
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    50. Giorgianni MW, Patel NH. Patterning of the branched head appendages in Schistocerca americana and Tribolium castaneum. Evol Dev. 2004 Nov-Dec; 6(6):402-10. PMID: 15509222.
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    51. Oakley TH, Gu Z, Abouheif E, Patel NH, Li WH. Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data. Mol Biol Evol. 2005 Jan; 22(1):40-50. PMID: 15356281.
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    52. Patel NH. Evolutionary biology: time, space and genomes. Nature. 2004 Sep 02; 431(7004):28-9. PMID: 15343315.
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    53. Ting CT, Tsaur SC, Sun S, Browne WE, Chen YC, Patel NH, Wu CI. Gene duplication and speciation in Drosophila: evidence from the Odysseus locus. Proc Natl Acad Sci U S A. 2004 Aug 17; 101(33):12232-5. PMID: 15304653.
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    54. Eichler EE, Patel NH. Genomes and evolution. From sequence to organism. Curr Opin Genet Dev. 2003 Dec; 13(6):559-61. PMID: 14638314.
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    55. Fujioka M, Lear BC, Landgraf M, Yusibova GL, Zhou J, Riley KM, Patel NH, Jaynes JB. Even-skipped, acting as a repressor, regulates axonal projections in Drosophila. Development. 2003 Nov; 130(22):5385-400. PMID: 13129849.
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    56. Patel NH. The ancestry of segmentation. Dev Cell. 2003 Jul; 5(1):2-4. PMID: 12852844.
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    57. Davis GK, Patel NH. Playing by pair-rules? Bioessays. 2003 May; 25(5):425-9. PMID: 12717812.
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    58. Lall S, Ludwig MZ, Patel NH. Nanos plays a conserved role in axial patterning outside of the Diptera. Curr Biol. 2003 Feb 04; 13(3):224-9. PMID: 12573218.
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    59. Gerberding M, Browne WE, Patel NH. Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis reveals an early restriction of cell fates. Development. 2002 Dec; 129(24):5789-801. PMID: 12421717.
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    60. Fujioka M, Yusibova GL, Patel NH, Brown SJ, Jaynes JB. The repressor activity of Even-skipped is highly conserved, and is sufficient to activate engrailed and to regulate both the spacing and stability of parasegment boundaries. Development. 2002 Oct; 129(19):4411-21. PMID: 12223400.
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    61. Gerberding M, Patel NH. Developmental biologists cast a net over sequenced genomes. Genome Biol. 2002 Sep 24; 3(10):REPORTS4032. PMID: 12374573.
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    62. Duman-Scheel M, Pirkl N, Patel NH. Analysis of the expression pattern of Mysidium columbiae wingless provides evidence for conserved mesodermal and retinal patterning processes among insects and crustaceans. Dev Genes Evol. 2002 Apr; 212(3):114-23. PMID: 11976949.
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    63. Patel NH, Lall S. Precision patterning. Nature. 2002 Feb 14; 415(6873):748-9. PMID: 11845195.
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    64. Davis GK, Patel NH. Short, long, and beyond: molecular and embryological approaches to insect segmentation. Annu Rev Entomol. 2002; 47:669-99. PMID: 11729088.
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