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Connection

Folker Meyer to Software

This is a "connection" page, showing publications Folker Meyer has written about Software.

 
Connection Strength
 
 
 
3.896
 
  1. Paczian T, Trimble WL, Gerlach W, Harrison T, Wilke A, Meyer F. The MG-RAST API explorer: an on-ramp for RESTful query composition. BMC Bioinformatics. 2019 Nov 08; 20(1):561.
    View in: PubMed
    Score: 0.571
  2. Meyer F, Bagchi S, Chaterji S, Gerlach W, Grama A, Harrison T, Paczian T, Trimble WL, Wilke A. MG-RAST version 4-lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. Brief Bioinform. 2019 07 19; 20(4):1151-1159.
    View in: PubMed
    Score: 0.559
  3. Wilke A, Glass EM, Bartels D, Bischof J, Braithwaite D, D'Souza M, Gerlach W, Harrison T, Keegan K, Matthews H, Kottmann R, Paczian T, Tang W, Trimble WL, Yilmaz P, Wilkening J, Desai N, Meyer F. A metagenomics portal for a democratized sequencing world. Methods Enzymol. 2013; 531:487-523.
    View in: PubMed
    Score: 0.355
  4. Wilke A, Harrison T, Wilkening J, Field D, Glass EM, Kyrpides N, Mavrommatis K, Meyer F. The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools. BMC Bioinformatics. 2012 Jun 21; 13:141.
    View in: PubMed
    Score: 0.342
  5. Meyer F, Overbeek R, Rodriguez A. FIGfams: yet another set of protein families. Nucleic Acids Res. 2009 Nov; 37(20):6643-54.
    View in: PubMed
    Score: 0.282
  6. Linke B, McHardy AC, Neuweger H, Krause L, Meyer F. REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes. Appl Bioinformatics. 2006; 5(3):193-8.
    View in: PubMed
    Score: 0.218
  7. Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Pühler A, Meyer F. Whole genome shotgun sequencing guided by bioinformatics pipelines--an optimized approach for an established technique. J Biotechnol. 2003 Dec 19; 106(2-3):121-33.
    View in: PubMed
    Score: 0.190
  8. Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F. EMMA: a platform for consistent storage and efficient analysis of microarray data. J Biotechnol. 2003 Dec 19; 106(2-3):135-46.
    View in: PubMed
    Score: 0.190
  9. Wilke A, Rückert C, Bartels D, Dondrup M, Goesmann A, Hüser AT, Kespohl S, Linke B, Mahne M, McHardy A, Pühler A, Meyer F. Bioinformatics support for high-throughput proteomics. J Biotechnol. 2003 Dec 19; 106(2-3):147-56.
    View in: PubMed
    Score: 0.190
  10. Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Pühler A, Meyer F. Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology. J Biotechnol. 2003 Dec 19; 106(2-3):157-67.
    View in: PubMed
    Score: 0.190
  11. Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A. GenDB--an open source genome annotation system for prokaryote genomes. Nucleic Acids Res. 2003 Apr 15; 31(8):2187-95.
    View in: PubMed
    Score: 0.181
  12. Keegan KP, Glass EM, Meyer F. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function. Methods Mol Biol. 2016; 1399:207-33.
    View in: PubMed
    Score: 0.109
  13. Wilke A, Bischof J, Harrison T, Brettin T, D'Souza M, Gerlach W, Matthews H, Paczian T, Wilkening J, Glass EM, Desai N, Meyer F. A RESTful API for accessing microbial community data for MG-RAST. PLoS Comput Biol. 2015 Jan; 11(1):e1004008.
    View in: PubMed
    Score: 0.102
  14. Mitra S, Rupek P, Richter DC, Urich T, Gilbert JA, Meyer F, Wilke A, Huson DH. Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG. BMC Bioinformatics. 2011 Feb 15; 12 Suppl 1:S21.
    View in: PubMed
    Score: 0.078
  15. Bekel T, Henckel K, Küster H, Meyer F, Mittard Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A. The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. J Biotechnol. 2009 Mar 10; 140(1-2):3-12.
    View in: PubMed
    Score: 0.068
  16. Krause L, McHardy AC, Nattkemper TW, Pühler A, Stoye J, Meyer F. GISMO--gene identification using a support vector machine for ORF classification. Nucleic Acids Res. 2007; 35(2):540-9.
    View in: PubMed
    Score: 0.058
  17. Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, de Crécy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Rückert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 2005; 33(17):5691-702.
    View in: PubMed
    Score: 0.054
  18. Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, Meyer F, Schuster SC. BACCardI--a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics. 2005 Apr 01; 21(7):853-9.
    View in: PubMed
    Score: 0.050
  19. Goesmann A, Haubrock M, Meyer F, Kalinowski J, Giegerich R. PathFinder: reconstruction and dynamic visualization of metabolic pathways. Bioinformatics. 2002 Jan; 18(1):124-9.
    View in: PubMed
    Score: 0.041
  20. Chaterji S, Koo J, Li N, Meyer F, Grama A, Bagchi S. Federation in genomics pipelines: techniques and challenges. Brief Bioinform. 2019 01 18; 20(1):235-244.
    View in: PubMed
    Score: 0.034
  21. Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol. 2011 May; 29(5):415-20.
    View in: PubMed
    Score: 0.020
  22. McNeil LK, Reich C, Aziz RK, Bartels D, Cohoon M, Disz T, Edwards RA, Gerdes S, Hwang K, Kubal M, Margaryan GR, Meyer F, Mihalo W, Olsen GJ, Olson R, Osterman A, Paarmann D, Paczian T, Parrello B, Pusch GD, Rodionov DA, Shi X, Vassieva O, Vonstein V, Zagnitko O, Xia F, Zinner J, Overbeek R, Stevens R. The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. Nucleic Acids Res. 2007 Jan; 35(Database issue):D347-53.
    View in: PubMed
    Score: 0.015
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.