Loading...
The University of Chicago Header Logo
Keywords
Last Name
Institution

Henry Abarbanel

AddressChicago IL 60637
vCardDownload vCard

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    List All   |   Timeline
    1. Platt JA, Wong A, Clark R, Penny SG, Abarbanel HDI. Robust forecasting using predictive generalized synchronization in reservoir computing. Chaos. 2021 Dec; 31(12):123118. PMID: 34972341.
      View in: PubMed
    2. Abarbanel HDI. A personal retrospective on the 60th anniversary of the journal biological cybernetics. Biol Cybern. 2021 06; 115(3):205-206. PMID: 34037854.
      View in: PubMed
    3. Ty AJA, Fang Z, Gonzalez RA, Rozdeba PJ, Abarbanel HDI. Machine Learning of Time Series Using Time-Delay Embedding and Precision Annealing. Neural Comput. 2019 10; 31(10):2004-2024. PMID: 31393828.
      View in: PubMed
    4. Abarbanel HDI, Rozdeba PJ, Shirman S. Machine Learning: Deepest Learning as Statistical Data Assimilation Problems. Neural Comput. 2018 08; 30(8):2025-2055. PMID: 29894650.
      View in: PubMed
    5. Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D. Response to "Comment on 'A unifying view of synchronization for data assimilation in complex nonlinear networks'" [Chaos 28, 028101 (2018)]. Chaos. 2018 02; 28(2):028102. PMID: 29495669.
      View in: PubMed
    6. Wang J, Breen D, Akinin A, Broccard F, Abarbanel HDI, Cauwenberghs G. Assimilation of Biophysical Neuronal Dynamics in Neuromorphic VLSI. IEEE Trans Biomed Circuits Syst. 2017 12; 11(6):1258-1270. PMID: 29324422.
      View in: PubMed
    7. Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D. A unifying view of synchronization for data assimilation in complex nonlinear networks. Chaos. 2017 Dec; 27(12):126802. PMID: 29289057.
      View in: PubMed
    8. Kadakia N, Armstrong E, Breen D, Morone U, Daou A, Margoliash D, Abarbanel HD. Nonlinear statistical data assimilation for HVC[Formula: see text] neurons in the avian song system. Biol Cybern. 2016 12; 110(6):417-434. PMID: 27688218.
      View in: PubMed
    9. Nogaret A, Meliza CD, Margoliash D, Abarbanel HD. Automatic Construction of Predictive Neuron Models through Large Scale Assimilation of Electrophysiological Data. Sci Rep. 2016 09 08; 6:32749. PMID: 27605157.
      View in: PubMed
    10. Armstrong E, Abarbanel HD. Model of the songbird nucleus HVC as a network of central pattern generators. J Neurophysiol. 2016 11 01; 116(5):2405-2419. PMID: 27535375.
      View in: PubMed
    11. Ye J, Rey D, Kadakia N, Eldridge M, Morone UI, Rozdeba P, Abarbanel HD, Quinn JC. Systematic variational method for statistical nonlinear state and parameter estimation. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Nov; 92(5):052901. PMID: 26651756.
      View in: PubMed
    12. Schumann-Bischoff J, Parlitz U, Abarbanel HD, Kostuk M, Rey D, Eldridge M, Luther S. Basin structure of optimization based state and parameter estimation. Chaos. 2015 May; 25(5):053108. PMID: 26026320.
      View in: PubMed
    13. Nogaret A, O'Callaghan EL, Lataro RM, Salgado HC, Meliza CD, Duncan E, Abarbanel HD, Paton JF. Silicon central pattern generators for cardiac diseases. J Physiol. 2015 Feb 15; 593(4):763-74. PMID: 25433077.
      View in: PubMed
    14. Rey D, Eldridge M, Morone U, Abarbanel HD, Parlitz U, Schumann-Bischoff J. Using waveform information in nonlinear data assimilation. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Dec; 90(6):062916. PMID: 25615173.
      View in: PubMed
    15. Ye J, Rozdeba PJ, Morone UI, Daou A, Abarbanel HD. Estimating the biophysical properties of neurons with intracellular calcium dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jun; 89(6):062714. PMID: 25019821.
      View in: PubMed
    16. Meliza CD, Kostuk M, Huang H, Nogaret A, Margoliash D, Abarbanel HD. Estimating parameters and predicting membrane voltages with conductance-based neuron models. Biol Cybern. 2014 Aug; 108(4):495-516. PMID: 24962080.
      View in: PubMed
    17. Knowlton C, Meliza CD, Margoliash D, Abarbanel HD. Dynamical estimation of neuron and network properties III: network analysis using neuron spike times. Biol Cybern. 2014 Jun; 108(3):261-73. PMID: 24760370.
      View in: PubMed
    18. Kostuk M, Toth BA, Meliza CD, Margoliash D, Abarbanel HD. Dynamical estimation of neuron and network properties II: Path integral Monte Carlo methods. Biol Cybern. 2012 Mar; 106(3):155-67. PMID: 22526358.
      View in: PubMed
    19. Neftci EO, Toth B, Indiveri G, Abarbanel HD. Dynamic state and parameter estimation applied to neuromorphic systems. Neural Comput. 2012 Jul; 24(7):1669-94. PMID: 22428591.
      View in: PubMed
    20. Toth BA, Kostuk M, Meliza CD, Margoliash D, Abarbanel HD. Dynamical estimation of neuron and network properties I: variational methods. Biol Cybern. 2011 Oct; 105(3-4):217-37. PMID: 21986979.
      View in: PubMed
    21. Haas JS, Kreuz T, Torcini A, Politi A, Abarbanel HD. Rate maintenance and resonance in the entorhinal cortex. Eur J Neurosci. 2010 Dec; 32(11):1930-9. PMID: 21044179.
      View in: PubMed
    22. Kreuz T, Chicharro D, Andrzejak RG, Haas JS, Abarbanel HD. Measuring multiple spike train synchrony. J Neurosci Methods. 2009 Oct 15; 183(2):287-99. PMID: 19591867.
      View in: PubMed
    23. Quinn JC, Bryant PH, Creveling DR, Klein SR, Abarbanel HD. Parameter and state estimation of experimental chaotic systems using synchronization. Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jul; 80(1 Pt 2):016201. PMID: 19658786.
      View in: PubMed
    24. Gibb L, Gentner TQ, Abarbanel HD. Brain stem feedback in a computational model of birdsong sequencing. J Neurophysiol. 2009 Sep; 102(3):1763-78. PMID: 19553477.
      View in: PubMed
    25. Gibb L, Gentner TQ, Abarbanel HD. Inhibition and recurrent excitation in a computational model of sparse bursting in song nucleus HVC. J Neurophysiol. 2009 Sep; 102(3):1748-62. PMID: 19515949.
      View in: PubMed
    26. Muezzinoglu MK, Huerta R, Abarbanel HD, Ryan MA, Rabinovich MI. Chemosensor-driven artificial antennal lobe transient dynamics enable fast recognition and working memory. Neural Comput. 2009 Apr; 21(4):1018-37. PMID: 19018701.
      View in: PubMed
    27. Talathi SS, Abarbanel HD, Ditto WL. Temporal spike pattern learning. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Sep; 78(3 Pt 1):031918. PMID: 18851076.
      View in: PubMed
    28. Abarbanel HD, Creveling DR, Jeanne JM. Estimation of parameters in nonlinear systems using balanced synchronization. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jan; 77(1 Pt 2):016208. PMID: 18351927.
      View in: PubMed
    29. Shlens J, Kennel MB, Abarbanel HD, Chichilnisky EJ. Estimating information rates with confidence intervals in neural spike trains. Neural Comput. 2007 Jul; 19(7):1683-719. PMID: 17521276.
      View in: PubMed
    30. Kreuz T, Haas JS, Morelli A, Abarbanel HD, Politi A. Measuring spike train synchrony. J Neurosci Methods. 2007 Sep 15; 165(1):151-61. PMID: 17628690.
      View in: PubMed
    31. Borst A, Abarbanel HD. Relating a calcium indicator signal to the unperturbed calcium concentration time-course. Theor Biol Med Model. 2007 Feb 06; 4:7. PMID: 17284310.
      View in: PubMed
    32. Haas JS, Nowotny T, Abarbanel HD. Spike-timing-dependent plasticity of inhibitory synapses in the entorhinal cortex. J Neurophysiol. 2006 Dec; 96(6):3305-13. PMID: 16928795.
      View in: PubMed
    33. Abarbanel HD, Talathi SS. Neural circuitry for recognizing interspike interval sequences. Phys Rev Lett. 2006 Apr 14; 96(14):148104. PMID: 16712127.
      View in: PubMed
    34. Briggman KL, Abarbanel HD, Kristan WB. From crawling to cognition: analyzing the dynamical interactions among populations of neurons. Curr Opin Neurobiol. 2006 Apr; 16(2):135-44. PMID: 16564165.
      View in: PubMed
    35. Nowotny T, Huerta R, Abarbanel HD, Rabinovich MI. Self-organization in the olfactory system: one shot odor recognition in insects. Biol Cybern. 2005 Dec; 93(6):436-46. PMID: 16320081.
      View in: PubMed
    36. Abarbanel HD, Talathi SS, Gibb L, Rabinovich MI. Synaptic plasticity with discrete state synapses. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Sep; 72(3 Pt 1):031914. PMID: 16241489.
      View in: PubMed
    37. Kennel MB, Shlens J, Abarbanel HD, Chichilnisky EJ. Estimating entropy rates with Bayesian confidence intervals. Neural Comput. 2005 Jul; 17(7):1531-76. PMID: 15901407.
      View in: PubMed
    38. Denker M, Szücs A, Pinto RD, Abarbanel HD, Selverston AI. A network of electronic neural oscillators reproduces the dynamics of the periodically forced pyloric pacemaker group. IEEE Trans Biomed Eng. 2005 May; 52(5):792-8. PMID: 15887528.
      View in: PubMed
    39. Briggman KL, Abarbanel HD, Kristan WB. Optical imaging of neuronal populations during decision-making. Science. 2005 Feb 11; 307(5711):896-901. PMID: 15705844.
      View in: PubMed
    40. Szücs A, Abarbanel HD, Rabinovich MI, Selverston AI. Dopamine modulation of spike dynamics in bursting neurons. Eur J Neurosci. 2005 Feb; 21(3):763-72. PMID: 15733094.
      View in: PubMed
    41. Abarbanel HD, Talathi SS, Mindlin G, Rabinovich M, Gibb L. Dynamical model of birdsong maintenance and control. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Nov; 70(5 Pt 1):051911. PMID: 15600660.
      View in: PubMed
    42. Abarbanel HD, Gibb L, Mindlin GB, Rabinovich MI, Talathi S. Spike timing and synaptic plasticity in the premotor pathway of birdsong. Biol Cybern. 2004 Sep; 91(3):159-67. PMID: 15378372.
      View in: PubMed
    43. Huerta R, Nowotny T, García-Sanchez M, Abarbanel HD, Rabinovich MI. Learning classification in the olfactory system of insects. Neural Comput. 2004 Aug; 16(8):1601-40. PMID: 15228747.
      View in: PubMed
    44. Abarbanel HD, Gibb L, Mindlin GB, Talathi S. Mapping neural architectures onto acoustic features of birdsong. J Neurophysiol. 2004 Jul; 92(1):96-110. PMID: 15028750.
      View in: PubMed
    45. Szucs A, Vehovszky A, Molnár G, Pinto RD, Abarbanel HD. Reliability and precision of neural spike timing: simulation of spectrally broadband synaptic inputs. Neuroscience. 2004; 126(4):1063-73. PMID: 15207339.
      View in: PubMed
    46. Nowotny T, Zhigulin VP, Selverston AI, Abarbanel HD, Rabinovich MI. Enhancement of synchronization in a hybrid neural circuit by spike-timing dependent plasticity. J Neurosci. 2003 Oct 29; 23(30):9776-85. PMID: 14586005.
      View in: PubMed
    47. Nowotny T, Rabinovich MI, Huerta R, Abarbanel HD. Decoding temporal information through slow lateral excitation in the olfactory system of insects. J Comput Neurosci. 2003 Sep-Oct; 15(2):271-81. PMID: 14512751.
      View in: PubMed
    48. Abarbanel HD, Gibb L, Huerta R, Rabinovich MI. Biophysical model of synaptic plasticity dynamics. Biol Cybern. 2003 Sep; 89(3):214-26. PMID: 14504940.
      View in: PubMed
    49. Nowotny T, Rabinovich MI, Abarbanel HD. Spatial representation of temporal information through spike-timing-dependent plasticity. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Jul; 68(1 Pt 1):011908. PMID: 12935177.
      View in: PubMed
    50. Whitehead A, Rabinovich MI, Huerta R, Zhigulin VP, Abarbanel HD. Dynamical synaptic plasticity: a model and connection to some experiments. Biol Cybern. 2003 Mar; 88(3):229-35. PMID: 12647230.
      View in: PubMed
    51. Szucs A, Pinto RD, Rabinovich MI, Abarbanel HD, Selverston AI. Synaptic modulation of the interspike interval signatures of bursting pyloric neurons. J Neurophysiol. 2003 Mar; 89(3):1363-77. PMID: 12626616.
      View in: PubMed
    52. Zhigulin VP, Rabinovich MI, Huerta R, Abarbanel HD. Robustness and enhancement of neural synchronization by activity-dependent coupling. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Feb; 67(2 Pt 1):021901. PMID: 12636709.
      View in: PubMed
    53. Tenny R, Tsimring LS, Larson L, Abarbanel HD. Using distributed nonlinear dynamics for public key encryption. Phys Rev Lett. 2003 Jan 31; 90(4):047903. PMID: 12570462.
      View in: PubMed
    54. Rabinovich MI, Pinto RD, Abarbanel HD, Tumer E, Stiesberg G, Huerta R, Selverston AI. Recovery of hidden information through synaptic dynamics. Network. 2002 Nov; 13(4):487-501. PMID: 12463341.
      View in: PubMed
    55. Illing L, Bröcker J, Kocarev L, Parlitz U, Abarbanel HD. When are synchronization errors small? Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Sep; 66(3 Pt 2A):036229. PMID: 12366246.
      View in: PubMed
    56. Elson RC, Selverston AI, Abarbanel HD, Rabinovich MI. Inhibitory synchronization of bursting in biological neurons: dependence on synaptic time constant. J Neurophysiol. 2002 Sep; 88(3):1166-76. PMID: 12205138.
      View in: PubMed
    57. Kennel MB, Abarbanel HD. False neighbors and false strands: a reliable minimum embedding dimension algorithm. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Aug; 66(2 Pt 2):026209. PMID: 12241269.
      View in: PubMed
    58. Abarbanel HD, Huerta R, Rabinovich MI. Dynamical model of long-term synaptic plasticity. Proc Natl Acad Sci U S A. 2002 Jul 23; 99(15):10132-7. PMID: 12114531.
      View in: PubMed
    59. Abarbanel HD, Rabinovich MI. Neurodynamics: nonlinear dynamics and neurobiology. Curr Opin Neurobiol. 2001 Aug; 11(4):423-30. PMID: 11502387.
      View in: PubMed
    60. Rabinovich M, Volkovskii A, Lecanda P, Huerta R, Abarbanel HD, Laurent G. Dynamical encoding by networks of competing neuron groups: winnerless competition. Phys Rev Lett. 2001 Aug 06; 87(6):068102. PMID: 11497865.
      View in: PubMed
    61. Pinto RD, Elson RC, Szücs A, Rabinovich MI, Selverston AI, Abarbanel HD. Extended dynamic clamp: controlling up to four neurons using a single desktop computer and interface. J Neurosci Methods. 2001 Jul 15; 108(1):39-48. PMID: 11459616.
      View in: PubMed
    62. Varona P, Torres JJ, Huerta R, Abarbanel HD, Rabinovich MI. Regularization mechanisms of spiking-bursting neurons. Neural Netw. 2001 Jul-Sep; 14(6-7):865-75. PMID: 11665777.
      View in: PubMed
    63. Bazhenov M, Stopfer M, Rabinovich M, Huerta R, Abarbanel HD, Sejnowski TJ, Laurent G. Model of transient oscillatory synchronization in the locust antennal lobe. Neuron. 2001 May; 30(2):553-67. PMID: 11395014.
      View in: PubMed
    64. Bazhenov M, Stopfer M, Rabinovich M, Abarbanel HD, Sejnowski TJ, Laurent G. Model of cellular and network mechanisms for odor-evoked temporal patterning in the locust antennal lobe. Neuron. 2001 May; 30(2):569-81. PMID: 11395015.
      View in: PubMed
    65. Szücs A, Elson RC, Rabinovich MI, Abarbanel HD, Selverston AI. Nonlinear behavior of sinusoidally forced pyloric pacemaker neurons. J Neurophysiol. 2001 Apr; 85(4):1623-38. PMID: 11287486.
      View in: PubMed
    66. Varona P, Torres JJ, Abarbanel HD, Rabinovich MI, Elson RC. Dynamics of two electrically coupled chaotic neurons: experimental observations and model analysis. Biol Cybern. 2001 Feb; 84(2):91-101. PMID: 11205354.
      View in: PubMed
    67. Huerta R, Varona P, Rabinovich MI, Abarbanel HD. Topology selection by chaotic neurons of a pyloric central pattern generator. Biol Cybern. 2001 Jan; 84(1):L1-8. PMID: 11204401.
      View in: PubMed
    68. Laurent G, Stopfer M, Friedrich RW, Rabinovich MI, Volkovskii A, Abarbanel HD. Odor encoding as an active, dynamical process: experiments, computation, and theory. Annu Rev Neurosci. 2001; 24:263-97. PMID: 11283312.
      View in: PubMed
    69. Lewis CT, Abarbanel HD, Kennel MB, Buhl M, Illing L. Synchronization of chaotic oscillations in doped fiber ring lasers. Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Jan; 63(1 Pt 2):016215. PMID: 11304343.
      View in: PubMed
    70. Eguia MC, Rabinovich MI, Abarbanel HD. Information transmission and recovery in neural communications channels. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Nov; 62(5 Pt B):7111-22. PMID: 11102068.
      View in: PubMed
    71. Rabinovich MI, Huerta R, Volkovskii A, Abarbanel HD, Stopfer M, Laurent G. Dynamical coding of sensory information with competitive networks. J Physiol Paris. 2000 Sep-Dec; 94(5-6):465-71. PMID: 11165913.
      View in: PubMed
    72. Selverston AI, Rabinovich MI, Abarbanel HD, Elson R, Szücs A, Pinto RD, Huerta R, Varona P. Reliable circuits from irregular neurons: a dynamical approach to understanding central pattern generators. J Physiol Paris. 2000 Sep-Dec; 94(5-6):357-74. PMID: 11165906.
      View in: PubMed
    73. Pinto RD, Varona P, Volkovskii AR, Szücs A, Abarbanel HD, Rabinovich MI. Synchronous behavior of two coupled electronic neurons. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Aug; 62(2 Pt B):2644-56. PMID: 11088744.
      View in: PubMed
    74. Falcke M, Huerta R, Rabinovich MI, Abarbanel HD, Elson RC, Selverston AI. Modeling observed chaotic oscillations in bursting neurons: the role of calcium dynamics and IP3. Biol Cybern. 2000 Jun; 82(6):517-27. PMID: 10879435.
      View in: PubMed
    75. Szucs A, Varona P, Volkovskii AR, Abarbanel HD, Rabinovich MI, Selverston AI. Interacting biological and electronic neurons generate realistic oscillatory rhythms. Neuroreport. 2000 Feb 28; 11(3):563-9. PMID: 10718315.
      View in: PubMed
    76. Elson RC, Huerta R, Abarbanel HD, Rabinovich MI, Selverston AI. Dynamic control of irregular bursting in an identified neuron of an oscillatory circuit. J Neurophysiol. 1999 Jul; 82(1):115-22. PMID: 10400940.
      View in: PubMed
    77. Selverston A, Elson R, Rabinovich M, Huerta R, Abarbanel H. Basic principles for generating motor output in the stomatogastric ganglion. Ann N Y Acad Sci. 1998 Nov 16; 860:35-50. PMID: 9928300.
      View in: PubMed
    78. Rabinovich MI, Abarbanel HD. The role of chaos in neural systems. Neuroscience. 1998 Nov; 87(1):5-14. PMID: 9722138.
      View in: PubMed
    79. Sarnthein J, Abarbanel HD, Pockberger H. Nonlinear analysis of epileptic activity in rabbit neocortex. Biol Cybern. 1998 Jan; 78(1):37-44. PMID: 9485585.
      View in: PubMed
    80. Abarbanel HD, Huerta R, Rabinovich MI, Rulkov NF, Rowat PF, Selverston AI. Synchronized action of synaptically coupled chaotic model neurons. Neural Comput. 1996 Nov 15; 8(8):1567-602. PMID: 8888609.
      View in: PubMed
    Abarbanel's Networks
    Click the "See All" links for more information and interactive visualizations!
    Concepts Expand Description
    See all (171) concept(s)
    _
    Co-Authors Expand Description
    See all (2) people
    _
    Similar People Expand Description
    See all (60) people
    _
    Physical Neighbors Expand Description
    _