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Henry Abarbanel

AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Platt JA, Penny SG, Smith TA, Chen TC, Abarbanel HDI. A systematic exploration of reservoir computing for forecasting complex spatiotemporal dynamics. Neural Netw. 2022 Sep; 153:530-552. PMID: 35839598.
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    2. Clark R, Fuller L, Platt JA, Abarbanel HDI. Reduced-Dimension, Biophysical Neuron Models Constructed From Observed Data. Neural Comput. 2022 06 16; 34(7):1545-1587. PMID: 35671464.
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    3. Platt JA, Wong A, Clark R, Penny SG, Abarbanel HDI. Robust forecasting using predictive generalized synchronization in reservoir computing. Chaos. 2021 Dec; 31(12):123118. PMID: 34972341.
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    4. Abarbanel HDI. A personal retrospective on the 60th anniversary of the journal biological cybernetics. Biol Cybern. 2021 06; 115(3):205-206. PMID: 34037854.
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    5. Ty AJA, Fang Z, Gonzalez RA, Rozdeba PJ, Abarbanel HDI. Machine Learning of Time Series Using Time-Delay Embedding and Precision Annealing. Neural Comput. 2019 10; 31(10):2004-2024. PMID: 31393828.
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    6. Abarbanel HDI, Rozdeba PJ, Shirman S. Machine Learning: Deepest Learning as Statistical Data Assimilation Problems. Neural Comput. 2018 08; 30(8):2025-2055. PMID: 29894650.
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    7. Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D. Response to "Comment on 'A unifying view of synchronization for data assimilation in complex nonlinear networks'" [Chaos 28, 028101 (2018)]. Chaos. 2018 02; 28(2):028102. PMID: 29495669.
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    8. Wang J, Breen D, Akinin A, Broccard F, Abarbanel HDI, Cauwenberghs G. Assimilation of Biophysical Neuronal Dynamics in Neuromorphic VLSI. IEEE Trans Biomed Circuits Syst. 2017 12; 11(6):1258-1270. PMID: 29324422.
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    9. Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D. A unifying view of synchronization for data assimilation in complex nonlinear networks. Chaos. 2017 Dec; 27(12):126802. PMID: 29289057.
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    10. Kadakia N, Armstrong E, Breen D, Morone U, Daou A, Margoliash D, Abarbanel HD. Nonlinear statistical data assimilation for HVC[Formula: see text] neurons in the avian song system. Biol Cybern. 2016 12; 110(6):417-434. PMID: 27688218.
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    11. Nogaret A, Meliza CD, Margoliash D, Abarbanel HD. Automatic Construction of Predictive Neuron Models through Large Scale Assimilation of Electrophysiological Data. Sci Rep. 2016 09 08; 6:32749. PMID: 27605157.
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    12. Armstrong E, Abarbanel HD. Model of the songbird nucleus HVC as a network of central pattern generators. J Neurophysiol. 2016 11 01; 116(5):2405-2419. PMID: 27535375.
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    13. Ye J, Rey D, Kadakia N, Eldridge M, Morone UI, Rozdeba P, Abarbanel HD, Quinn JC. Systematic variational method for statistical nonlinear state and parameter estimation. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Nov; 92(5):052901. PMID: 26651756.
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    14. Schumann-Bischoff J, Parlitz U, Abarbanel HD, Kostuk M, Rey D, Eldridge M, Luther S. Basin structure of optimization based state and parameter estimation. Chaos. 2015 May; 25(5):053108. PMID: 26026320.
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    15. Nogaret A, O'Callaghan EL, Lataro RM, Salgado HC, Meliza CD, Duncan E, Abarbanel HD, Paton JF. Silicon central pattern generators for cardiac diseases. J Physiol. 2015 Feb 15; 593(4):763-74. PMID: 25433077.
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    16. Rey D, Eldridge M, Morone U, Abarbanel HD, Parlitz U, Schumann-Bischoff J. Using waveform information in nonlinear data assimilation. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Dec; 90(6):062916. PMID: 25615173.
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    17. Ye J, Rozdeba PJ, Morone UI, Daou A, Abarbanel HD. Estimating the biophysical properties of neurons with intracellular calcium dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jun; 89(6):062714. PMID: 25019821.
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    18. Meliza CD, Kostuk M, Huang H, Nogaret A, Margoliash D, Abarbanel HD. Estimating parameters and predicting membrane voltages with conductance-based neuron models. Biol Cybern. 2014 Aug; 108(4):495-516. PMID: 24962080.
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    19. Knowlton C, Meliza CD, Margoliash D, Abarbanel HD. Dynamical estimation of neuron and network properties III: network analysis using neuron spike times. Biol Cybern. 2014 Jun; 108(3):261-73. PMID: 24760370.
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    20. Kostuk M, Toth BA, Meliza CD, Margoliash D, Abarbanel HD. Dynamical estimation of neuron and network properties II: Path integral Monte Carlo methods. Biol Cybern. 2012 Mar; 106(3):155-67. PMID: 22526358.
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    21. Neftci EO, Toth B, Indiveri G, Abarbanel HD. Dynamic state and parameter estimation applied to neuromorphic systems. Neural Comput. 2012 Jul; 24(7):1669-94. PMID: 22428591.
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    22. Toth BA, Kostuk M, Meliza CD, Margoliash D, Abarbanel HD. Dynamical estimation of neuron and network properties I: variational methods. Biol Cybern. 2011 Oct; 105(3-4):217-37. PMID: 21986979.
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    23. Haas JS, Kreuz T, Torcini A, Politi A, Abarbanel HD. Rate maintenance and resonance in the entorhinal cortex. Eur J Neurosci. 2010 Dec; 32(11):1930-9. PMID: 21044179.
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    24. Kreuz T, Chicharro D, Andrzejak RG, Haas JS, Abarbanel HD. Measuring multiple spike train synchrony. J Neurosci Methods. 2009 Oct 15; 183(2):287-99. PMID: 19591867.
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    25. Quinn JC, Bryant PH, Creveling DR, Klein SR, Abarbanel HD. Parameter and state estimation of experimental chaotic systems using synchronization. Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jul; 80(1 Pt 2):016201. PMID: 19658786.
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    26. Gibb L, Gentner TQ, Abarbanel HD. Brain stem feedback in a computational model of birdsong sequencing. J Neurophysiol. 2009 Sep; 102(3):1763-78. PMID: 19553477.
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    27. Gibb L, Gentner TQ, Abarbanel HD. Inhibition and recurrent excitation in a computational model of sparse bursting in song nucleus HVC. J Neurophysiol. 2009 Sep; 102(3):1748-62. PMID: 19515949.
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    28. Muezzinoglu MK, Huerta R, Abarbanel HD, Ryan MA, Rabinovich MI. Chemosensor-driven artificial antennal lobe transient dynamics enable fast recognition and working memory. Neural Comput. 2009 Apr; 21(4):1018-37. PMID: 19018701.
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    29. Talathi SS, Abarbanel HD, Ditto WL. Temporal spike pattern learning. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Sep; 78(3 Pt 1):031918. PMID: 18851076.
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    30. Abarbanel HD, Creveling DR, Jeanne JM. Estimation of parameters in nonlinear systems using balanced synchronization. Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jan; 77(1 Pt 2):016208. PMID: 18351927.
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    31. Shlens J, Kennel MB, Abarbanel HD, Chichilnisky EJ. Estimating information rates with confidence intervals in neural spike trains. Neural Comput. 2007 Jul; 19(7):1683-719. PMID: 17521276.
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    32. Kreuz T, Haas JS, Morelli A, Abarbanel HD, Politi A. Measuring spike train synchrony. J Neurosci Methods. 2007 Sep 15; 165(1):151-61. PMID: 17628690.
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    33. Borst A, Abarbanel HD. Relating a calcium indicator signal to the unperturbed calcium concentration time-course. Theor Biol Med Model. 2007 Feb 06; 4:7. PMID: 17284310.
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    34. Haas JS, Nowotny T, Abarbanel HD. Spike-timing-dependent plasticity of inhibitory synapses in the entorhinal cortex. J Neurophysiol. 2006 Dec; 96(6):3305-13. PMID: 16928795.
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    35. Abarbanel HD, Talathi SS. Neural circuitry for recognizing interspike interval sequences. Phys Rev Lett. 2006 Apr 14; 96(14):148104. PMID: 16712127.
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    36. Briggman KL, Abarbanel HD, Kristan WB. From crawling to cognition: analyzing the dynamical interactions among populations of neurons. Curr Opin Neurobiol. 2006 Apr; 16(2):135-44. PMID: 16564165.
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    37. Nowotny T, Huerta R, Abarbanel HD, Rabinovich MI. Self-organization in the olfactory system: one shot odor recognition in insects. Biol Cybern. 2005 Dec; 93(6):436-46. PMID: 16320081.
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    38. Abarbanel HD, Talathi SS, Gibb L, Rabinovich MI. Synaptic plasticity with discrete state synapses. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Sep; 72(3 Pt 1):031914. PMID: 16241489.
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    39. Kennel MB, Shlens J, Abarbanel HD, Chichilnisky EJ. Estimating entropy rates with Bayesian confidence intervals. Neural Comput. 2005 Jul; 17(7):1531-76. PMID: 15901407.
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    40. Denker M, Szücs A, Pinto RD, Abarbanel HD, Selverston AI. A network of electronic neural oscillators reproduces the dynamics of the periodically forced pyloric pacemaker group. IEEE Trans Biomed Eng. 2005 May; 52(5):792-8. PMID: 15887528.
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    41. Briggman KL, Abarbanel HD, Kristan WB. Optical imaging of neuronal populations during decision-making. Science. 2005 Feb 11; 307(5711):896-901. PMID: 15705844.
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    42. Szücs A, Abarbanel HD, Rabinovich MI, Selverston AI. Dopamine modulation of spike dynamics in bursting neurons. Eur J Neurosci. 2005 Feb; 21(3):763-72. PMID: 15733094.
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    43. Abarbanel HD, Talathi SS, Mindlin G, Rabinovich M, Gibb L. Dynamical model of birdsong maintenance and control. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Nov; 70(5 Pt 1):051911. PMID: 15600660.
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    44. Abarbanel HD, Gibb L, Mindlin GB, Rabinovich MI, Talathi S. Spike timing and synaptic plasticity in the premotor pathway of birdsong. Biol Cybern. 2004 Sep; 91(3):159-67. PMID: 15378372.
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    45. Huerta R, Nowotny T, García-Sanchez M, Abarbanel HD, Rabinovich MI. Learning classification in the olfactory system of insects. Neural Comput. 2004 Aug; 16(8):1601-40. PMID: 15228747.
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    46. Abarbanel HD, Gibb L, Mindlin GB, Talathi S. Mapping neural architectures onto acoustic features of birdsong. J Neurophysiol. 2004 Jul; 92(1):96-110. PMID: 15028750.
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    47. Szucs A, Vehovszky A, Molnár G, Pinto RD, Abarbanel HD. Reliability and precision of neural spike timing: simulation of spectrally broadband synaptic inputs. Neuroscience. 2004; 126(4):1063-73. PMID: 15207339.
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    48. Nowotny T, Zhigulin VP, Selverston AI, Abarbanel HD, Rabinovich MI. Enhancement of synchronization in a hybrid neural circuit by spike-timing dependent plasticity. J Neurosci. 2003 Oct 29; 23(30):9776-85. PMID: 14586005.
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    49. Nowotny T, Rabinovich MI, Huerta R, Abarbanel HD. Decoding temporal information through slow lateral excitation in the olfactory system of insects. J Comput Neurosci. 2003 Sep-Oct; 15(2):271-81. PMID: 14512751.
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    50. Abarbanel HD, Gibb L, Huerta R, Rabinovich MI. Biophysical model of synaptic plasticity dynamics. Biol Cybern. 2003 Sep; 89(3):214-26. PMID: 14504940.
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    51. Nowotny T, Rabinovich MI, Abarbanel HD. Spatial representation of temporal information through spike-timing-dependent plasticity. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Jul; 68(1 Pt 1):011908. PMID: 12935177.
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    52. Whitehead A, Rabinovich MI, Huerta R, Zhigulin VP, Abarbanel HD. Dynamical synaptic plasticity: a model and connection to some experiments. Biol Cybern. 2003 Mar; 88(3):229-35. PMID: 12647230.
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    53. Szucs A, Pinto RD, Rabinovich MI, Abarbanel HD, Selverston AI. Synaptic modulation of the interspike interval signatures of bursting pyloric neurons. J Neurophysiol. 2003 Mar; 89(3):1363-77. PMID: 12626616.
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    54. Zhigulin VP, Rabinovich MI, Huerta R, Abarbanel HD. Robustness and enhancement of neural synchronization by activity-dependent coupling. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Feb; 67(2 Pt 1):021901. PMID: 12636709.
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    55. Tenny R, Tsimring LS, Larson L, Abarbanel HD. Using distributed nonlinear dynamics for public key encryption. Phys Rev Lett. 2003 Jan 31; 90(4):047903. PMID: 12570462.
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    56. Rabinovich MI, Pinto RD, Abarbanel HD, Tumer E, Stiesberg G, Huerta R, Selverston AI. Recovery of hidden information through synaptic dynamics. Network. 2002 Nov; 13(4):487-501. PMID: 12463341.
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    57. Illing L, Bröcker J, Kocarev L, Parlitz U, Abarbanel HD. When are synchronization errors small? Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Sep; 66(3 Pt 2A):036229. PMID: 12366246.
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    58. Elson RC, Selverston AI, Abarbanel HD, Rabinovich MI. Inhibitory synchronization of bursting in biological neurons: dependence on synaptic time constant. J Neurophysiol. 2002 Sep; 88(3):1166-76. PMID: 12205138.
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    59. Kennel MB, Abarbanel HD. False neighbors and false strands: a reliable minimum embedding dimension algorithm. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Aug; 66(2 Pt 2):026209. PMID: 12241269.
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    60. Abarbanel HD, Huerta R, Rabinovich MI. Dynamical model of long-term synaptic plasticity. Proc Natl Acad Sci U S A. 2002 Jul 23; 99(15):10132-7. PMID: 12114531.
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    61. Abarbanel HD, Rabinovich MI. Neurodynamics: nonlinear dynamics and neurobiology. Curr Opin Neurobiol. 2001 Aug; 11(4):423-30. PMID: 11502387.
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    62. Rabinovich M, Volkovskii A, Lecanda P, Huerta R, Abarbanel HD, Laurent G. Dynamical encoding by networks of competing neuron groups: winnerless competition. Phys Rev Lett. 2001 Aug 06; 87(6):068102. PMID: 11497865.
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    63. Pinto RD, Elson RC, Szücs A, Rabinovich MI, Selverston AI, Abarbanel HD. Extended dynamic clamp: controlling up to four neurons using a single desktop computer and interface. J Neurosci Methods. 2001 Jul 15; 108(1):39-48. PMID: 11459616.
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    64. Varona P, Torres JJ, Huerta R, Abarbanel HD, Rabinovich MI. Regularization mechanisms of spiking-bursting neurons. Neural Netw. 2001 Jul-Sep; 14(6-7):865-75. PMID: 11665777.
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    65. Bazhenov M, Stopfer M, Rabinovich M, Huerta R, Abarbanel HD, Sejnowski TJ, Laurent G. Model of transient oscillatory synchronization in the locust antennal lobe. Neuron. 2001 May; 30(2):553-67. PMID: 11395014.
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    66. Bazhenov M, Stopfer M, Rabinovich M, Abarbanel HD, Sejnowski TJ, Laurent G. Model of cellular and network mechanisms for odor-evoked temporal patterning in the locust antennal lobe. Neuron. 2001 May; 30(2):569-81. PMID: 11395015.
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    67. Szücs A, Elson RC, Rabinovich MI, Abarbanel HD, Selverston AI. Nonlinear behavior of sinusoidally forced pyloric pacemaker neurons. J Neurophysiol. 2001 Apr; 85(4):1623-38. PMID: 11287486.
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    68. Varona P, Torres JJ, Abarbanel HD, Rabinovich MI, Elson RC. Dynamics of two electrically coupled chaotic neurons: experimental observations and model analysis. Biol Cybern. 2001 Feb; 84(2):91-101. PMID: 11205354.
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    69. Huerta R, Varona P, Rabinovich MI, Abarbanel HD. Topology selection by chaotic neurons of a pyloric central pattern generator. Biol Cybern. 2001 Jan; 84(1):L1-8. PMID: 11204401.
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    70. Laurent G, Stopfer M, Friedrich RW, Rabinovich MI, Volkovskii A, Abarbanel HD. Odor encoding as an active, dynamical process: experiments, computation, and theory. Annu Rev Neurosci. 2001; 24:263-97. PMID: 11283312.
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    71. Lewis CT, Abarbanel HD, Kennel MB, Buhl M, Illing L. Synchronization of chaotic oscillations in doped fiber ring lasers. Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Jan; 63(1 Pt 2):016215. PMID: 11304343.
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    72. Eguia MC, Rabinovich MI, Abarbanel HD. Information transmission and recovery in neural communications channels. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Nov; 62(5 Pt B):7111-22. PMID: 11102068.
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    73. Rabinovich MI, Huerta R, Volkovskii A, Abarbanel HD, Stopfer M, Laurent G. Dynamical coding of sensory information with competitive networks. J Physiol Paris. 2000 Sep-Dec; 94(5-6):465-71. PMID: 11165913.
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    74. Selverston AI, Rabinovich MI, Abarbanel HD, Elson R, Szücs A, Pinto RD, Huerta R, Varona P. Reliable circuits from irregular neurons: a dynamical approach to understanding central pattern generators. J Physiol Paris. 2000 Sep-Dec; 94(5-6):357-74. PMID: 11165906.
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    75. Pinto RD, Varona P, Volkovskii AR, Szücs A, Abarbanel HD, Rabinovich MI. Synchronous behavior of two coupled electronic neurons. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Aug; 62(2 Pt B):2644-56. PMID: 11088744.
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    76. Falcke M, Huerta R, Rabinovich MI, Abarbanel HD, Elson RC, Selverston AI. Modeling observed chaotic oscillations in bursting neurons: the role of calcium dynamics and IP3. Biol Cybern. 2000 Jun; 82(6):517-27. PMID: 10879435.
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    77. Szucs A, Varona P, Volkovskii AR, Abarbanel HD, Rabinovich MI, Selverston AI. Interacting biological and electronic neurons generate realistic oscillatory rhythms. Neuroreport. 2000 Feb 28; 11(3):563-9. PMID: 10718315.
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    78. Elson RC, Huerta R, Abarbanel HD, Rabinovich MI, Selverston AI. Dynamic control of irregular bursting in an identified neuron of an oscillatory circuit. J Neurophysiol. 1999 Jul; 82(1):115-22. PMID: 10400940.
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    79. Selverston A, Elson R, Rabinovich M, Huerta R, Abarbanel H. Basic principles for generating motor output in the stomatogastric ganglion. Ann N Y Acad Sci. 1998 Nov 16; 860:35-50. PMID: 9928300.
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    80. Rabinovich MI, Abarbanel HD. The role of chaos in neural systems. Neuroscience. 1998 Nov; 87(1):5-14. PMID: 9722138.
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    81. Sarnthein J, Abarbanel HD, Pockberger H. Nonlinear analysis of epileptic activity in rabbit neocortex. Biol Cybern. 1998 Jan; 78(1):37-44. PMID: 9485585.
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    82. Abarbanel HD, Huerta R, Rabinovich MI, Rulkov NF, Rowat PF, Selverston AI. Synchronized action of synaptically coupled chaotic model neurons. Neural Comput. 1996 Nov 15; 8(8):1567-602. PMID: 8888609.
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