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Atsushi Doi

AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Munemura R, Maehara T, Murakami Y, Koga R, Aoyagi R, Kaneko N, Doi A, Perugino CA, Della-Torre E, Saeki T, Sato Y, Yamamoto H, Kiyoshima T, Stone JH, Pillai S, Nakamura S. Distinct disease-specific Tfh cell populations in 2 different fibrotic diseases: IgG4-related disease and Kimura disease. J Allergy Clin Immunol. 2022 May 11. PMID: 35568079.
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    2. Doi A, Miyazaki N, Yamada T. Unusual response to atrial entrainment pacing dependent on pacing current strength: What is the mechanism? J Cardiovasc Electrophysiol. 2022 Jun; 33(6):1322-1324. PMID: 35388940.
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    3. Yamamoto C, Takemura A, Ishii S, Doi A, Saito I, Yamada H, Sakai Y, Matsunaga T, Ito K. A novel perfusion culture system for screening mitochondrial toxicity in primary mouse hepatocytes. J Toxicol Sci. 2022; 47(1):13-18. PMID: 34987137.
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    4. Yamane H, Araki R, Doi A, Sato F, Tanaka K, Miyazaki N, Goda T, Yamada T. Successful wound healing of refractory digital ulcer in patient with systemic sclerosis by Waon therapy. J Cardiol Cases. 2021 Oct; 24(4):190-192. PMID: 35059054.
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    5. Nogami M, Ishikawa M, Doi A, Sano O, Sone T, Akiyama T, Aoki M, Nakanishi A, Ogi K, Yano M, Okano H. Identification of hub molecules of FUS-ALS by Bayesian gene regulatory network analysis of iPSC model: iBRN. Neurobiol Dis. 2021 07; 155:105364. PMID: 33857636.
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    6. Saga N, Doi A, Oda T, Kudoh SN. Elucidation of EEG Characteristics of Fuzzy Reasoning-Based Heuristic BCI and Its Application to Patient With Brain Infarction. Front Neurorobot. 2020; 14:607706. PMID: 33568981.
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    7. Arimoto T, Watanabe E, Kohno R, Shimeno K, Kikuchi K, Doi A, Inoue K, Nitta T, Nogami A, Abe H, Okumura K. Impact of a poor functional capacity on the clinical outcomes in patients with a pacemaker implantation -Results from the Japanese Heart Rhythm Society Registry. J Arrhythm. 2021 Feb; 37(1):182-188. PMID: 33664901.
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    8. Tamura S, Yoshiyama T, Doi A, Yoshiyama M. Absence of shock therapy related to improper sensing of noise on the defibrillation test during subcutaneous implantable cardioverter-defibrillator implantation: a case report. Eur Heart J Case Rep. 2020 Dec; 4(6):1-6. PMID: 33447710.
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    9. Yamane H, Araki R, Doi A, Sato F, Tanaka K, Miyazaki N, Goda T, Yamada T. A successful case of "temporary endoluminal bypass technique" using a guide extension catheter during thrombolysis for acute limb ischemia in the non-stenting zone. J Cardiol Cases. 2021 May; 23(5):250-252. PMID: 33995709.
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    10. Masutani K, Matsukuma Y, Tsuchimoto A, Okabe Y, Doi A, Kaku K, Nakamura M, Nakano T, Tsuruya K, Kitazono T. Comparison of Immunohistochemical Staining for Large T Antigen and Capsid Protein VP1 in BK Polyomavirus-Associated Nephropathy. Nephron. 2020; 144 Suppl 1:28-36. PMID: 33221810.
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    11. Nakata T, Doi A, Uta D, Shin MC, Yoshimura M. Free gait in a shallow pool accelerates recovery after exercise in model mice with fibromyalgia. J Exerc Rehabil. 2020 Oct; 16(5):398-409. PMID: 33178641.
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    12. Doi A, Miyazaki N, Goda T, Yamada T. Ventricular-ventricular-atrial response after ventricular entrainment pacing for a narrow QRS tachycardia with intermittent atrioventricular dissociation: What is the mechanism? Heart Rhythm. 2021 03; 18(3):482-484. PMID: 33022394.
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    13. Nakata T, Doi A, Uta D, Yoshimura M, Shin MC. Excessive exercise induces cardiac arrhythmia in a young fibromyalgia mouse model. PLoS One. 2020; 15(9):e0239473. PMID: 32997682.
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    14. Doi A, Miyazaki N, Goda T, Yamane H, Tanaka K, Araki R, Sato F, Yamada T. Irregular narrow QRS complex tachycardia with intermittent atrioventricular dissociation: What is the mechanism? J Cardiovasc Electrophysiol. 2020 Aug; 31(8):2234-2237. PMID: 32529764.
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    15. Moya-Díaz J, Bayonés L, Montenegro M, Cárdenas AM, Koch H, Doi A, Marengo FD. Ca2+ -independent and voltage-dependent exocytosis in mouse chromaffin cells. Acta Physiol (Oxf). 2020 04; 228(4):e13417. PMID: 31769918.
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    16. Katayama H, Shibata A, Doi A, Ishikawa H, Tamura S, Yamaguchi Y, Matsuo M, Yoshiyama T, Tatsumi H, Iwata S, Ehara S, Izumiya Y, Yoshiyama M. Successful catheter ablation improves exercise tolerance in persistent atrial fibrillation patients, especially those with reduced ventricular contraction, preserved atrial function, or a high CHADS2 score. J Cardiol. 2020 05; 75(5):529-536. PMID: 31708409.
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    17. Tamura S, Doi A, Matsuo M, Katayama H, Yoshiyama T, Tatsumi H, Izumiya Y, Yoshiyama M. Prognostic value of high-sensitive troponin T for predicting cardiovascular events after atrial fibrillation ablation. J Cardiovasc Electrophysiol. 2019 09; 30(9):1475-1482. PMID: 31192482.
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    18. Sonohata M, Doi A, Yasaka T, Uta D, Mawatari M, Yoshimura M. Noradrenaline modulates mechanically evoked responses in the rat spinal dorsal horn: an in vivo patch-clamp study. J Pain Res. 2019; 12:1269-1278. PMID: 31114307.
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    19. Uta D, Kato G, Doi A, Andoh T, Kume T, Yoshimura M, Koga K. Animal models of chronic pain increase spontaneous glutamatergic transmission in adult rat spinal dorsal horn in vitro and in vivo. Biochem Biophys Res Commun. 2019 04 30; 512(2):352-359. PMID: 30894274.
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    20. Iyanaga T, Abe H, Oka T, Miura T, Iwasaki R, Takase M, Isatake M, Doi A. Recumbent cycling with integrated volitional control electrical stimulation improves gait speed during the recovery stage in stroke patients. J Exerc Rehabil. 2019 Feb; 15(1):95-102. PMID: 30899743.
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    21. Miyamoto K, Doi A, Hasegawa K, Morita Y, Mishima T, Suzuki I, Kaseno K, Nakajima K, Kataoka N, Kamakura T, Wada M, Yamagata K, Ishibashi K, Inoue YY, Nagase S, Noda T, Aiba T, Asakura M, Izumi C, Noguchi T, Tada H, Takagi M, Yasuda S, Kusano KF. Multicenter Study of the Validity of Additional Freeze Cycles for Cryoballoon Ablation in Patients With Paroxysmal Atrial Fibrillation: The AD-Balloon Study. Circ Arrhythm Electrophysiol. 2019 01; 12(1):e006989. PMID: 30626209.
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    22. Nonin S, Iwata S, Ito A, Tamura S, Kitada R, Kawai Y, Ishikawa S, Doi A, Hanatani A, Yoshiyama M. Right ventricular enlargement predicts responsiveness to tolvaptan in congestive heart failure patients with reduced ejection fraction. Int J Cardiol Heart Vasc. 2018 Dec; 21:69-73. PMID: 30345343.
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    23. Doi A, Sakasaki J, Tokunaga C, Sugita F, Kasae S, Nishimura K, Sato Y, Kuratsu T, Hashiguchi S, Shin MC, Yoshimura M. Both ipsilateral and contralateral localized vibratory stimulations modulated pain-related sensory thresholds on the foot in mice and humans. J Pain Res. 2018; 11:1645-1657. PMID: 30214274.
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    24. Kawano N, Yoshida S, Kawano S, Kuriyama T, Tahara Y, Toyofuku A, Manabe T, Doi A, Terasaka S, Yamashita K, Ueda Y, Ochiai H, Marutsuka K, Yamano Y, Shimoda K, Kikuchi I. The clinical impact of human T-lymphotrophic virus type 1 (HTLV-1) infection on the development of adult T-cell leukemia-lymphoma (ATL) or HTLV-1-associated myelopathy (HAM) / atypical HAM after allogeneic hematopoietic stem cell transplantation (allo-HSCT) and renal transplantation. J Clin Exp Hematop. 2018 Sep 19; 58(3):107-121. PMID: 30089749.
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    25. Tsuchimoto A, Matsukuma Y, Ueki K, Nishiki T, Doi A, Okabe Y, Nakamura M, Tsuruya K, Nakano T, Kitazono T, Masutani K. Thrombotic microangiopathy associated with anticardiolipin antibody in a kidney transplant recipient with polycythemia. CEN Case Rep. 2019 02; 8(1):1-7. PMID: 30073489.
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    26. Doi A, Takagi M, Yoshiyama M. Conversion of wide QRS tachycardia with a long RP interval in pre-excitation syndrome: What is the mechanism? J Cardiovasc Electrophysiol. 2018 10; 29(10):1450-1453. PMID: 29897153.
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    27. Norioka N, Iwata S, Ito A, Tamura S, Kawai Y, Nonin S, Ishikawa S, Doi A, Hanatani A, Yoshiyama M. Greater nighttime blood pressure variability is associated with left atrial enlargement in atrial fibrillation patients with preserved ejection fraction. Hypertens Res. 2018 Aug; 41(8):614-621. PMID: 29899365.
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    28. Doi A, Takagi M, Katayama H, Yoshiyama T, Hayashi Y, Tatsumi H, Yoshiyama M. Diagnostic value of electrocardiographic P-wave characteristics in atrial fibrillation recurrence and tachycardia-induced cardiomyopathy after catheter ablation. Heart Vessels. 2018 Nov; 33(11):1381-1389. PMID: 29713820.
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    29. Sakamoto S, Kataoka T, Kanai M, Tamura K, Iguchi T, Tatsumi H, Doi A, Yoshiyama M. Multiple coronary artery spasms triggering life-threatening ventricular arrhythmia associated with the radiofrequency ablation of ganglionated plexuses of the left atrium. J Cardiol Cases. 2018 Apr; 17(4):133-136. PMID: 30279875.
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    30. Doi A, Oketani R, Nawa Y, Fujita K. High-resolution imaging in two-photon excitation microscopy using in situ estimations of the point spread function. Biomed Opt Express. 2018 Jan 01; 9(1):202-213. PMID: 29359097.
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    31. Doi A, Miyamoto K, Nakano YS, Sakasaki J, Kasae S, Nishimura K, Shin MC, Yoshimura M. Sole vibration improves locomotion through the recovery of joint movements in a mouse cast model. PLoS One. 2017; 12(10):e0186189. PMID: 29040289.
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    32. Hayashi Y, Takagi M, Kakihara J, Sakamoto S, Tatsumi H, Doi A, Iwata S, Sugioka K, Yoshiyama M. Impact of simple electrocardiographic markers as predictors for deterioration of left ventricular function in patients with frequent right ventricular apical pacing. Heart Vessels. 2018 Mar; 33(3):299-308. PMID: 28952029.
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    33. Doi A, Takagi M, Kakihara J, Hayashi Y, Tatsumi H, Fujimoto K, Sugioka K, Yoshiyama M. Incidence and predictors of silent cerebral thromboembolic lesions after catheter ablation for atrial fibrillation in patients treated with direct oral anticoagulants. Heart Vessels. 2017 Oct; 32(10):1227-1235. PMID: 28466408.
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    34. Kakihara J, Takagi M, Hayashi Y, Tatsumi H, Doi A, Yoshiyama M. Utility of 12-lead and signal-averaged Holter electrocardiograms after pilsicainide provocation for risk stratification in Brugada syndrome. Heart Vessels. 2017 Sep; 32(9):1151-1159. PMID: 28364267.
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    35. Yamagata K, Doi A, Kawata H, Makimoto H, Yokoyama T, Inoue Y, Okamura H, Noda T, Shimizu W, Aihara N, Maki T, Kamakura S, Kusano K, Satomi K. Persistent tachycardia within isolated pulmonary veins during atrial fibrillation ablation. Heart Vessels. 2017 Aug; 32(8):1006-1012. PMID: 28283739.
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    36. Oketani R, Doi A, Smith NI, Nawa Y, Kawata S, Fujita K. Saturated two-photon excitation fluorescence microscopy with core-ring illumination. Opt Lett. 2017 Feb 01; 42(3):571-574. PMID: 28146530.
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    37. Sugiyama D, Joshi A, Kulkeaw K, Tan KS, Yokoo-Inoue T, Mizuochi-Yanagi C, Yasuda K, Doi A, Iino T, Itoh M, Nagao-Sato S, Tani K, Akashi K, Hayashizaki Y, Suzuki H, Kawaji H, Carninci P, Forrest AR. A Transcriptional Switch Point During Hematopoietic Stem and Progenitor Cell Ontogeny. Stem Cells Dev. 2017 03 01; 26(5):314-327. PMID: 27848279.
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    38. Matsunaga N, Ikeda E, Kakimoto K, Watanabe M, Shindo N, Tsuruta A, Ikeyama H, Hamamura K, Higashi K, Yamashita T, Kondo H, Yoshida Y, Matsuda M, Ogino T, Tokushige K, Itcho K, Furuichi Y, Nakao T, Yasuda K, Doi A, Amamoto T, Aramaki H, Tsuda M, Inoue K, Ojida A, Koyanagi S, Ohdo S. Inhibition of G0/G1 Switch 2 Ameliorates Renal Inflammation in Chronic Kidney Disease. EBioMedicine. 2016 Nov; 13:262-273. PMID: 27745900.
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    39. Sakamoto S, Takagi M, Kakihara J, Hayashi Y, Doi A, Sugioka K, Yoshiyama M. The utility of T-wave alternans during the morning in the summer for the risk stratification of patients with Brugada syndrome. Heart Vessels. 2017 Mar; 32(3):341-351. PMID: 27480879.
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    40. Miyamoto K, Doi A, Amaya N, Morita Y, Noda T, Asakura M, Hamasaki T, Tada H, Takagi M, Yasuda S, Kusano K. A multicenter study of the need of additional freezing for cryoballoon ablation in patients with atrial fibrillation: The AD-Balloon study. J Arrhythm. 2017 Apr; 33(2):81-85. PMID: 28416971.
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    41. Hanatani A, Shibata A, Kitada R, Iwata S, Matsumura Y, Doi A, Sugioka K, Takagi M, Yoshiyama M. Administration of tolvaptan with reduction of loop diuretics ameliorates congestion with improving renal dysfunction in patients with congestive heart failure and renal dysfunction. Heart Vessels. 2017 Mar; 32(3):287-294. PMID: 27385022.
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    42. Hayashi Y, Takagi M, Kakihara J, Sakamoto S, Doi A, Sugioka K, Hanatani A, Yoshiyama M. Safety and efficacy of high-rate cutoff and long detection interval ICD programming in secondary prevention patients. Heart Vessels. 2017 Feb; 32(2):175-185. PMID: 27259484.
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    43. Doi A, Takagi M, Fujimoto K, Kakihara J, Hayashi Y, Tatsumi H, Yoshiyama M. Long RP' Tachycardia With Unusual Entrainment Responses: What Is the Mechanism? J Cardiovasc Electrophysiol. 2016 10; 27(10):1242-1244. PMID: 27090609.
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    44. Kakihara J, Takagi M, Hayashi Y, Tatsumi H, Doi A, Yoshiyama M. Radiofrequency catheter ablation for treatment of premature ventricular contractions triggering ventricular fibrillation from the right ventricular outflow tract in a patient with early repolarization syndrome. HeartRhythm Case Rep. 2016 Jul; 2(4):342-346. PMID: 28491706.
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    45. Talib AK, Sato N, Myojo T, Sugiyama E, Nakagawa N, Sakamoto N, Tanabe Y, Fujino T, Takeuchi T, Akasaka K, Matsuhashi H, Saijo Y, Kawamura Y, Doi A, Hasebe N. Insight into specific pro-arrhythmic triggers in Brugada and early repolarization syndromes: results of long-term follow-up. Heart Vessels. 2016 Dec; 31(12):2035-2044. PMID: 26968993.
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    46. Hamamura K, Matsunaga N, Ikeda E, Kondo H, Ikeyama H, Tokushige K, Itcho K, Furuichi Y, Yoshida Y, Matsuda M, Yasuda K, Doi A, Yokota Y, Amamoto T, Aramaki H, Irino Y, Koyanagi S, Ohdo S. Alterations of Hepatic Metabolism in Chronic Kidney Disease via D-box-binding Protein Aggravate the Renal Dysfunction. J Biol Chem. 2016 Mar 04; 291(10):4913-27. PMID: 26728457.
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    47. Sakamoto S, Takagi M, Tatsumi H, Doi A, Sugioka K, Hanatani A, Yoshiyama M. Utility of T-wave alternans during night time as a predictor for ventricular fibrillation in patients with Brugada syndrome. Heart Vessels. 2016 Jun; 31(6):947-56. PMID: 25989739.
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    48. Sugioka K, Takagi M, Sakamoto S, Fujita S, Ito A, Iwata S, Matsumura Y, Nakagawa M, Doi A, Miki Y, Yoshiyama M, Ueda M. Predictors of silent brain infarction on magnetic resonance imaging in patients with nonvalvular atrial fibrillation: A transesophageal echocardiographic study. Am Heart J. 2015 Jun; 169(6):783-90. PMID: 26027615.
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    49. Kinjyo I, Qin J, Tan SY, Wellard CJ, Mrass P, Ritchie W, Doi A, Cavanagh LL, Tomura M, Sakaue-Sawano A, Kanagawa O, Miyawaki A, Hodgkin PD, Weninger W. Real-time tracking of cell cycle progression during CD8+ effector and memory T-cell differentiation. Nat Commun. 2015 Feb 24; 6:6301. PMID: 25709008.
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    50. Koch H, Caughie C, Elsen FP, Doi A, Garcia AJ, Zanella S, Ramirez JM. Prostaglandin E2 differentially modulates the central control of eupnoea, sighs and gasping in mice. J Physiol. 2015 01 01; 593(1):305-19. PMID: 25556802.
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    51. Sugioka K, Fujita S, Iwata S, Ito A, Matsumura Y, Hanatani A, Doi A, Takagi M, Naruko T, Ueda M, Yoshiyama M. Relationship between CHADS2 score and complex aortic plaques by transesophageal echocardiography in patients with nonvalvular atrial fibrillation. Ultrasound Med Biol. 2014 Oct; 40(10):2358-64. PMID: 25023106.
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    52. Zanella S, Doi A, Garcia AJ, Elsen F, Kirsch S, Wei AD, Ramirez JM. When norepinephrine becomes a driver of breathing irregularities: how intermittent hypoxia fundamentally alters the modulatory response of the respiratory network. J Neurosci. 2014 Jan 01; 34(1):36-50. PMID: 24381266.
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    53. Sakamoto N, Sato N, Goto M, Kobayashi M, Takehara N, Takeuchi T, Talib AK, Sugiyama E, Minoshima A, Tanabe Y, Akasaka K, Kawabe J, Kawamura Y, Doi A, Hasebe N. Three cases of corticosteroid therapy triggering ventricular fibrillation in J-wave syndromes. Heart Vessels. 2014 Nov; 29(6):867-72. PMID: 24281399.
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    54. Viemari JC, Garcia AJ, Doi A, Elsen G, Ramirez JM. ß-Noradrenergic receptor activation specifically modulates the generation of sighs in vivo and in vitro. Front Neural Circuits. 2013; 7:179. PMID: 24273495.
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    55. Hoshi Y, Nozawa Y, Ogasawara M, Yuda S, Sato S, Sakasai T, Oka M, Katayama H, Sato M, Kouzu H, Nishihara M, Doi A, Nishimiya T, Miura T. Atrial electromechanical interval may predict cardioembolic stroke in apparently low risk elderly patients with paroxysmal atrial fibrillation. Echocardiography. 2014 Feb; 31(2):140-8. PMID: 23906195.
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    56. Doi A, Satomi K, Makimoto H, Yokoyama T, Yamada Y, Okamura H, Noda T, Aiba T, Aihara N, Yasuda S, Ogawa H, Kamakura S, Shimizu W. Efficacy of additional radiofrequency applications for spontaneous dissociated pulmonary vein activity after pulmonary vein isolation in patients with paroxysmal atrial fibrillation. J Cardiovasc Electrophysiol. 2013 Aug; 24(8):894-901. PMID: 23601079.
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    57. Garcia AJ, Rotem-Kohavi N, Doi A, Ramirez JM. Post-hypoxic recovery of respiratory rhythm generation is gender dependent. PLoS One. 2013; 8(4):e60695. PMID: 23593283.
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    58. Koch H, Zanella S, Elsen GE, Smith L, Doi A, Garcia AJ, Wei AD, Xun R, Kirsch S, Gomez CM, Hevner RF, Ramirez JM. Stable respiratory activity requires both P/Q-type and N-type voltage-gated calcium channels. J Neurosci. 2013 Feb 20; 33(8):3633-45. PMID: 23426690.
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    59. Sotomi Y, Inoue K, Ito N, Kimura R, Toyoshima Y, Masuda M, Doi A, Iwakura K, Okamura A, Koyama Y, Date M, Fujii K. Cause of very late recurrence of atrial fibrillation or flutter after catheter ablation for atrial fibrillation. Am J Cardiol. 2013 Feb 15; 111(4):552-6. PMID: 23211357.
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    60. Masuda M, Inoue K, Iwakura K, Okamura A, Toyoshima Y, Doi A, Sotomi Y, Komuro I, Fujii K. Impact of pulmonary vein isolation on atrial late potentials: association with the recurrence of atrial fibrillation. Europace. 2013 Apr; 15(4):501-7. PMID: 23059395.
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    61. Masuda M, Inoue K, Iwakura K, Okamura A, Koyama Y, Kimura R, Toyoshima Y, Doi A, Sotomi Y, Komuro I, Fujii K. Preprocedural ventricular rate predicts subsequent sick sinus syndrome after ablation for long-standing persistent atrial fibrillation. Pacing Clin Electrophysiol. 2012 Sep; 35(9):1074-80. PMID: 22817381.
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    62. Masuda M, Iwakura K, Inoue K, Okamura A, Koyama Y, Kimura R, Doi A, Toyoshima Y, Komuro I, Fujii K. Estimation of left atrial pump function by mitral annular velocity. Circ J. 2012; 76(6):1430-5. PMID: 22447006.
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    63. Komatsu N, Matsueda S, Tashiro K, Ioji T, Shichijo S, Noguchi M, Yamada A, Doi A, Suekane S, Moriya F, Matsuoka K, Kuhara S, Itoh K, Sasada T. Gene expression profiles in peripheral blood as a biomarker in cancer patients receiving peptide vaccination. Cancer. 2012 Jun 15; 118(12):3208-21. PMID: 22071976.
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    64. Makimoto H, Noda T, Kurita T, Nakajima I, Yokoyama T, Doi A, Yamada Y, Okamura H, Satomi K, Aiba T, Shimizu W, Suyama K, Aihara N, Kamakura S. Incessant monomorphic ventricular tachycardia induced by the proarrhythmic effect of amiodarone. Intern Med. 2011; 50(21):2591-5. PMID: 22041363.
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    65. Makimoto H, Kamakura S, Aihara N, Noda T, Nakajima I, Yokoyama T, Doi A, Kawata H, Yamada Y, Okamura H, Satomi K, Aiba T, Shimizu W. Clinical impact of the number of extrastimuli in programmed electrical stimulation in patients with Brugada type 1 electrocardiogram. Heart Rhythm. 2012 Feb; 9(2):242-8. PMID: 21939629.
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    66. Viemari JC, Garcia AJ, Doi A, Ramirez JM. Activation of alpha-2 noradrenergic receptors is critical for the generation of fictive eupnea and fictive gasping inspiratory activities in mammals in vitro. Eur J Neurosci. 2011 Jun; 33(12):2228-37. PMID: 21615559.
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    67. Miyata S, Kawabata S, Hiramatsu R, Doi A, Ikeda N, Yamashita T, Kuroiwa T, Kasaoka S, Maruyama K, Miyatake S. Computed tomography imaging of transferrin targeting liposomes encapsulating both boron and iodine contrast agents by convection-enhanced delivery to F98 rat glioma for boron neutron capture therapy. Neurosurgery. 2011 May; 68(5):1380-7; discussion 1387. PMID: 21273928.
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    68. Ramirez JM, Koch H, Garcia AJ, Doi A, Zanella S. The role of spiking and bursting pacemakers in the neuronal control of breathing. J Biol Phys. 2011 Jun; 37(3):241-61. PMID: 22654176.
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    69. Matsuno H, Tanaka Y, Aoshima H, Doi A, Matsui M, Miyano S. Biopathways representation and simulation on hybrid functional petri net. Stud Health Technol Inform. 2011; 162:77-91. PMID: 21685565.
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    70. Doi A, Nagasaki M, Matsuno H, Miyano S. Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net. Stud Health Technol Inform. 2011; 162:130-42. PMID: 21685569.
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    71. Doi A, Fujita S, Matsuno H, Nagasaki M, Miyano S. Constructing biological pathway models with hybrid functional petri nets. Stud Health Technol Inform. 2011; 162:92-112. PMID: 21685566.
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    72. Garcia AJ, Zanella S, Koch H, Doi A, Ramirez JM. Chapter 3--networks within networks: the neuronal control of breathing. Prog Brain Res. 2011; 188:31-50. PMID: 21333801.
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    73. Wake R, Iwata S, Nakagawa M, Doi A, Sugioka K, Otsuka R, Hozumi T, Takemoto Y, Ehara S, Hanatani A, Muro T, Yoshiyama M. Usefulness of cardiac computed tomography in the diagnosis of prosthetic coronary artery graft with interposition procedure. Clin Med Insights Cardiol. 2010 Oct 13; 4:95-8. PMID: 21079753.
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    74. Doi A, Ramirez JM. State-dependent interactions between excitatory neuromodulators in the neuronal control of breathing. J Neurosci. 2010 Jun 16; 30(24):8251-62. PMID: 20554877.
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    75. Doi A, Takagi M, Maeda K, Tatsumi H, Shimeno K, Yoshiyama M. Conduction delay in right ventricle as a marker for identifying high-risk patients with Brugada syndrome. J Cardiovasc Electrophysiol. 2010 Jun 01; 21(6):688-96. PMID: 20050961.
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    76. Shimeno K, Takagi M, Maeda K, Tatsumi H, Doi A, Nakagawa E, Yoshiyama M. A predictor of positive drug provocation testing in individuals with saddle-back type ST-segment elevation. Circ J. 2009 Oct; 73(10):1836-40. PMID: 19734691.
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    77. Shimeno K, Takagi M, Maeda K, Tatsumi H, Doi A, Yoshiyama M. Usefulness of multichannel Holter ECG recording in the third intercostal space for detecting type 1 Brugada ECG: comparison with repeated 12-lead ECGs. J Cardiovasc Electrophysiol. 2009 Sep; 20(9):1026-31. PMID: 19470036.
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    78. Araki H, Tamada Y, Imoto S, Dunmore B, Sanders D, Humphrey S, Nagasaki M, Doi A, Nakanishi Y, Yasuda K, Tomiyasu Y, Tashiro K, Print C, Charnock-Jones DS, Kuhara S, Miyano S. Analysis of PPARalpha-dependent and PPARalpha-independent transcript regulation following fenofibrate treatment of human endothelial cells. Angiogenesis. 2009; 12(3):221-9. PMID: 19357976.
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    79. Kitada H, Sugitani A, Okabe Y, Doi A, Nishioka Y, Nishiki T, Kayashima T, Tanabe R, Tanaka M. Treatment of arteriovenous shunts after renal transplantation. Surg Today. 2009; 39(4):310-3. PMID: 19319638.
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    80. Kawabata S, Miyatake S, Nonoguchi N, Hiramatsu R, Iida K, Miyata S, Yokoyama K, Doi A, Kuroda Y, Kuroiwa T, Michiue H, Kumada H, Kirihata M, Imahori Y, Maruhashi A, Sakurai Y, Suzuki M, Masunaga S, Ono K. Survival benefit from boron neutron capture therapy for the newly diagnosed glioblastoma patients. Appl Radiat Isot. 2009 Jul; 67(7-8 Suppl):S15-8. PMID: 19398348.
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    81. Segawa C, Ogino M, Okabayashi A, Abe N, Masuda Y, Doi A, Nishimiya T. [Basic investigation of software named "Heart Risk View" to estimate the probability of cardiac events, for the purpose of evaluating the availability in clinical practice]. Kaku Igaku. 2009 Mar; 46(1):21-7. PMID: 19413192.
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    82. Tamada Y, Araki H, Imoto S, Nagasaki M, Doi A, Nakanishi Y, Tomiyasu Y, Yasuda K, Dunmore B, Sanders D, Humphreys S, Print C, Charnock-Jones DS, Tashiro K, Kuhara S, Miyano S. Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks. Pac Symp Biocomput. 2009; 251-63. PMID: 19209706.
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    83. Doi A, Ramirez JM. Neuromodulation and the orchestration of the respiratory rhythm. Respir Physiol Neurobiol. 2008 Dec 10; 164(1-2):96-104. PMID: 18602029.
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    84. Kawabata S, Miyatake S, Kuroiwa T, Yokoyama K, Doi A, Iida K, Miyata S, Nonoguchi N, Michiue H, Takahashi M, Inomata T, Imahori Y, Kirihata M, Sakurai Y, Maruhashi A, Kumada H, Ono K. Boron neutron capture therapy for newly diagnosed glioblastoma. J Radiat Res. 2009 Jan; 50(1):51-60. PMID: 18957828.
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    85. Doi A, Mikami N. Dynamics of hydrogen-bonded OH stretches as revealed by single-mode infrared-ultraviolet laser double resonance spectroscopy on supersonically cooled clusters of phenol. J Chem Phys. 2008 Oct 21; 129(15):154308. PMID: 19045194.
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    86. Doi A, Kawabata S, Iida K, Yokoyama K, Kajimoto Y, Kuroiwa T, Shirakawa T, Kirihata M, Kasaoka S, Maruyama K, Kumada H, Sakurai Y, Masunaga S, Ono K, Miyatake S. Tumor-specific targeting of sodium borocaptate (BSH) to malignant glioma by transferrin-PEG liposomes: a modality for boron neutron capture therapy. J Neurooncol. 2008 May; 87(3):287-94. PMID: 18219552.
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    87. Sugitani A, Okabe Y, Hoshinaga K, Kitada H, Doi A, Nishiki T, Tanaka M. [Renal transplantation for diabetic nephropathy]. Nihon Jinzo Gakkai Shi. 2008; 50(7):904-10. PMID: 19069148.
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    88. Shiokawa H, Doi A, Koga K, Takahashi S, Yoshimura M. [Analysis of hypnotic or analgesic effect of anesthetic agents by in-vivo patch clamp recordings from somatosensory cortex in rats]. Masui. 2007 Nov; 56 Suppl:S99-107. PMID: 18051454.
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    89. Doi A, Mizuno M, Katafuchi T, Furue H, Koga K, Yoshimura M. Slow oscillation of membrane currents mediated by glutamatergic inputs of rat somatosensory cortical neurons: in vivo patch-clamp analysis. Eur J Neurosci. 2007 Nov; 26(9):2565-75. PMID: 17949423.
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    90. Yokoyama K, Miyatake S, Kajimoto Y, Kawabata S, Doi A, Yoshida T, Okabe M, Kirihata M, Ono K, Kuroiwa T. Analysis of boron distribution in vivo for boron neutron capture therapy using two different boron compounds by secondary ion mass spectrometry. Radiat Res. 2007 Jan; 167(1):102-9. PMID: 17214510.
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    91. Yoshimura M, Doi A, Mizuno M, Furue H. [Methods for in vivo patch-clamp recordings and their applications: synaptic responses in somatosensory cortex]. Nihon Yakurigaku Zasshi. 2006 Dec; 128(6):381-7. PMID: 17167211.
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    92. Tamura Y, Miyatake S, Nonoguchi N, Miyata S, Yokoyama K, Doi A, Kuroiwa T, Asada M, Tanabe H, Ono K. Boron neutron capture therapy for recurrent malignant meningioma. Case report. J Neurosurg. 2006 Dec; 105(6):898-903. PMID: 17405262.
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    93. Sugitani A, Kitada H, Ota M, Yoshida J, Doi A, Hirakata H, Tanaka M. Revival of effective and safe high-dose mizoribine for the kidney transplantation. Clin Transplant. 2006 Sep-Oct; 20(5):590-5. PMID: 16968484.
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    94. Yokoyama K, Miyatake S, Kajimoto Y, Kawabata S, Doi A, Yoshida T, Asano T, Kirihata M, Ono K, Kuroiwa T. Pharmacokinetic study of BSH and BPA in simultaneous use for BNCT. J Neurooncol. 2006 Jul; 78(3):227-32. PMID: 16557351.
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    95. Sasao H, Tsuchihashi K, Nagao K, Miyamoto K, Murakami H, Doi A, Shimoshige S, Hasegawa K, Kyuma M, Noda R, Shimamoto K. Long-term outcome after primary stenting versus balloon angioplasty for acute myocardial infarction. Int Heart J. 2006 Jan; 47(1):47-57. PMID: 16479040.
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    96. Doi A, Nagasaki M, Matsuno H, Miyano S. Simulation-based validation of the p53 transcriptional activity with hybrid functional petri net. In Silico Biol. 2006; 6(1-2):1-13. PMID: 16789909.
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    97. Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S. A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays. Genome Inform. 2006; 17(1):88-99. PMID: 17503359.
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    98. Doi A, Nagasaki M, Ueno K, Matsuno H, Miyano S. A combined pathway to simulate CDK-dependent phosphorylation and ARF-dependent stabilization for p53 transcriptional activity. Genome Inform. 2006; 17(1):112-23. PMID: 17503361.
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    99. Nagasaki M, Yamaguchi R, Yoshida R, Imoto S, Doi A, Tamada Y, Matsuno H, Miyano S, Higuchi T. Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data. Genome Inform. 2006; 17(1):46-61. PMID: 17503355.
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    100. Miyatake S, Kuwabara H, Kajimoto Y, Kawabata S, Yokoyama K, Doi A, Tsuji M, Mori H, Ono K, Kuroiwa T. Preferential recurrence of a sarcomatous component of a gliosarcoma after boron neutron capture therapy: case report. J Neurooncol. 2006 Jan; 76(2):143-7. PMID: 16234987.
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    101. Nagasaki M, Doi A, Miyano S. [Dynamic pathway modeling language: CSML]. Tanpakushitsu Kakusan Koso. 2005 Dec; 50(16 Suppl):2269-74. PMID: 16411461.
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    102. Baek DY, Wang J, Doi A, Kasahara S, Katô H, Baba M. Doppler-free two-photon excitation spectroscopy and the Zeeman effects. Perturbations in the 14(0)1 and 1(0)(1)14(0)1 bands of the S1 <-- S0 transition of C6D6. J Phys Chem A. 2005 Aug 18; 109(32):7127-33. PMID: 16834076.
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    103. Doi A, Takagi M, Toda I, Yoshiyama M, Takeuchi K, Yoshikawa J. Acute hemodynamic benefits of bi-atrial atrioventricular sequential pacing with the optimal atrioventricular delay. J Am Coll Cardiol. 2005 Jul 19; 46(2):320-6. PMID: 16022962.
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    104. Kato M, Nagasaki M, Doi A, Miyano S. Automatic drawing of biological networks using cross cost and subcomponent data. Genome Inform. 2005; 16(2):22-31. PMID: 16901086.
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    105. Yoshimura M, Doi A, Mizuno M, Furue H, Katafuchi T. In vivo and in vitro patch-clamp recording analysis of the process of sensory transmission in the spinal cord and sensory cortex. J Physiol Anthropol Appl Human Sci. 2005 Jan; 24(1):93-7. PMID: 15684552.
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    106. Doi A, Deguchi J, Yamada M, Shimano H, Nagao K, Arai M, Kuroiwa T. [Traumatic internal carotid artery dissection due to compression by a helmet strap]. No Shinkei Geka. 2004 Dec; 32(12):1279-82. PMID: 15605698.
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    107. Wang J, Doi A, Kasahara S, Katô H, Baba M. Doppler-free two-photon excitation spectroscopy and the Zeeman effect of the 140 1 band of the S1 1B2u<--S0 1A1g transition of benzene-d6. J Chem Phys. 2004 Nov 08; 121(18):9188-90. PMID: 15527390.
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    108. Yoshimura M, Furue H, Kato G, Doi A, Mizuno M, Katafuchi T. Application of in vivo patch-clamp technique to pharmacological analysis of synaptic transmission in the CNS. Nihon Yakurigaku Zasshi. 2004 08; 124(2):111-8. PMID: 15277729.
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    109. Matsuki T, Tamaki N, Nakata T, Doi A, Takahashi H, Iwata M, Sakamoto T, Yamauchi K, Shimazaki M, Morita K, Shimamoto K. Prognostic value of fatty acid imaging in patients with angina pectoris without prior myocardial infarction: comparison with stress thallium imaging. Eur J Nucl Med Mol Imaging. 2004 Dec; 31(12):1585-91. PMID: 15583913.
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    110. Doi A, Kasahara S, Katô H, Baba M. Sub-Doppler rotationally resolved spectroscopy of lower vibronic bands of benzene with Zeeman effects. J Chem Phys. 2004 Apr 08; 120(14):6439-48. PMID: 15267533.
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    111. Doi A, Fujita S, Matsuno H, Nagasaki M, Miyano S. Constructing biological pathway models with hybrid functional Petri nets. In Silico Biol. 2004; 4(3):271-91. PMID: 15724280.
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    112. Tamura Y, Kuroiwa T, Doi A, Min KY. Thymic carcinoma presenting as cranial metastasis with intradural and extracranial extension: case report. Neurosurgery. 2004 Jan; 54(1):209-11; discussion 211-2. PMID: 14683559.
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    113. Nagasaki M, Doi A, Matsuno H, Miyano S. A versatile petri net based architecture for modeling and simulation of complex biological processes. Genome Inform. 2004; 15(1):180-97. PMID: 15712121.
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    114. Sonohata M, Furue H, Katafuchi T, Yasaka T, Doi A, Kumamoto E, Yoshimura M. Actions of noradrenaline on substantia gelatinosa neurones in the rat spinal cord revealed by in vivo patch recording. J Physiol. 2004 Mar 01; 555(Pt 2):515-26. PMID: 14673188.
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    115. Shimazaki M, Fujita M, Tsukamoto K, Matsuki T, Iwata M, Takahashi H, Doi A, Hyakkoku M, Yamauchi K, Genda S, Kikuiri T, Sakamoto T, Nojiri S, Ashie T. An unusual case of primary effusion lymphoma in a HIV-negative patient not pathogenetically associated with HHV8. Eur J Haematol. 2003 Jul; 71(1):62-7. PMID: 12801300.
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    116. Matsuno H, Tanaka Y, Aoshima H, Doi A, Matsui M, Miyano S. Biopathways representation and simulation on hybrid functional Petri net. In Silico Biol. 2003; 3(3):389-404. PMID: 12954096.
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    117. Nagasaki M, Doi A, Matsuno H, Miyano S. Genomic Object Net: I. A platform for modelling and simulating biopathways. Appl Bioinformatics. 2003; 2(3):181-4. PMID: 15130806.
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    118. Doi A, Nagasaki M, Fujita S, Matsuno H, Miyano S. Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension. Appl Bioinformatics. 2003; 2(3):185-8. PMID: 15130807.
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    119. Doi A, Tsuchihashi K, Kyuma M, Takahashi T, Shimoshige SY, Miyamoto KJ, Uno K, Nakata T, Shimamoto K. Diagnostic implications of modified treadmill and head-up tilt tests in exercise-related syncope: comparative studies with situational and/or vasovagal syncope. Can J Cardiol. 2002 Sep; 18(9):960-6. PMID: 12368930.
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    120. Takagi M, Doi A, Takeuchi K, Yoshikawa J. Pilsicanide-induced marked T wave alternans and ventricular fibrillation in a patient with Brugada syndrome. J Cardiovasc Electrophysiol. 2002 Aug; 13(8):837. PMID: 12212710.
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    121. Doi A, Kakazu Y, Akaike N. Na(+)/Ca(2+) exchanger in GABAergic presynaptic boutons of rat central neurons. J Neurophysiol. 2002 Apr; 87(4):1694-702. PMID: 11929891.
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    122. Kanemoto Y, Ishibashi H, Doi A, Akaike N, Ito Y. An electrophysiological study of muscarinic and nicotinic receptors of rat paratracheal ganglion neurons and their inhibition by Z-338. Br J Pharmacol. 2002 Mar; 135(6):1403-14. PMID: 11906953.
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    123. Yamanaka H, Doi A, Ishibashi H, Akaike N. Aconitine facilitates spontaneous transmitter release at rat ventromedial hypothalamic neurons. Br J Pharmacol. 2002 Feb; 135(3):816-22. PMID: 11834630.
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