Phoebe Rice to Models, Molecular
This is a "connection" page, showing publications Phoebe Rice has written about Models, Molecular.
Connection Strength
2.299
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Architecture of a serine recombinase-DNA regulatory complex. Mol Cell. 2008 Apr 25; 30(2):145-55.
Score: 0.205
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Resolving integral questions in site-specific recombination. Nat Struct Mol Biol. 2005 Aug; 12(8):641-3.
Score: 0.170
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IHF and HU: flexible architects of bent DNA. Curr Opin Struct Biol. 2004 Feb; 14(1):28-35.
Score: 0.153
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New insight into site-specific recombination from Flp recombinase-DNA structures. Annu Rev Biophys Biomol Struct. 2003; 32:135-59.
Score: 0.143
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Crystal Structure of an Unusual Single-Stranded DNA-Binding Protein Encoded by Staphylococcal Cassette Chromosome Elements. Structure. 2018 08 07; 26(8):1144-1150.e3.
Score: 0.104
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Snapshots of a molecular swivel in action. Nucleic Acids Res. 2018 06 01; 46(10):5286-5296.
Score: 0.103
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Staphylococcal SCCmec elements encode an active MCM-like helicase and thus may be replicative. Nat Struct Mol Biol. 2016 Oct; 23(10):891-898.
Score: 0.091
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Structural basis for catalytic activation of a serine recombinase. Structure. 2011 Jun 08; 19(6):799-809.
Score: 0.064
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Moving DNA around: DNA transposition and retroviral integration. Curr Opin Struct Biol. 2011 Jun; 21(3):370-8.
Score: 0.063
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Sin resolvase catalytic activity and oligomerization state are tightly coupled. J Mol Biol. 2010 Nov 19; 404(1):16-33.
Score: 0.061
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Structure of the LexA-DNA complex and implications for SOS box measurement. Nature. 2010 Aug 12; 466(7308):883-6.
Score: 0.060
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Orchestrating serine resolvases. Biochem Soc Trans. 2010 Apr; 38(2):384-7.
Score: 0.059
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Regulatory mutations in Sin recombinase support a structure-based model of the synaptosome. Mol Microbiol. 2009 Oct; 74(2):282-98.
Score: 0.055
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Binding and catalytic contributions to site recognition by flp recombinase. J Biol Chem. 2008 Apr 25; 283(17):11414-23.
Score: 0.051
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Identification of a potential general acid/base in the reversible phosphoryl transfer reactions catalyzed by tyrosine recombinases: Flp H305. Chem Biol. 2007 Feb; 14(2):121-9.
Score: 0.047
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Shaping the Borrelia burgdorferi genome: crystal structure and binding properties of the DNA-bending protein Hbb. Mol Microbiol. 2007 Mar; 63(5):1319-30.
Score: 0.047
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Structure-based analysis of HU-DNA binding. J Mol Biol. 2007 Jan 26; 365(4):1005-16.
Score: 0.046
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Mechanisms of site-specific recombination. Annu Rev Biochem. 2006; 75:567-605.
Score: 0.044
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Functional Relevance of CASP16 Nucleic Acid Predictions as Evaluated by Structure Providers. Proteins. 2026 Jan; 94(1):51-78.
Score: 0.043
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Large serine integrases utilise scavenged phage proteins as directionality cofactors. Nucleic Acids Res. 2025 Jan 24; 53(3).
Score: 0.041
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Structure of TnsABCD transpososome reveals mechanisms of targeted DNA transposition. Cell. 2024 Nov 27; 187(24):6865-6881.e16.
Score: 0.040
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Crystal structure of a Rad51 filament. Nat Struct Mol Biol. 2004 Aug; 11(8):791-6.
Score: 0.039
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Flexible DNA bending in HU-DNA cocrystal structures. EMBO J. 2003 Jul 15; 22(14):3749-60.
Score: 0.037
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Integration host factor: putting a twist on protein-DNA recognition. J Mol Biol. 2003 Jul 11; 330(3):493-502.
Score: 0.037
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The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis. J Biol Chem. 2003 Jul 04; 278(27):24800-7.
Score: 0.036
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Structural plasticity of the Flp-Holliday junction complex. J Mol Biol. 2003 Feb 14; 326(2):425-34.
Score: 0.036
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Comparative architecture of transposase and integrase complexes. Nat Struct Biol. 2001 May; 8(5):302-7.
Score: 0.032
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Crystal structure of a Flp recombinase-Holliday junction complex: assembly of an active oligomer by helix swapping. Mol Cell. 2000 Oct; 6(4):885-97.
Score: 0.030
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Target highlights in CASP13: Experimental target structures through the eyes of their authors. Proteins. 2019 12; 87(12):1037-1057.
Score: 0.028
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Holding damaged DNA together. Nat Struct Biol. 1999 Sep; 6(9):805-6.
Score: 0.028
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Characterizing Watson-Crick versus Hoogsteen Base Pairing in a DNA-Protein Complex Using Nuclear Magnetic Resonance and Site-Specifically 13C- and 15N-Labeled DNA. Biochemistry. 2019 04 16; 58(15):1963-1974.
Score: 0.027
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Mu transpososome activity-profiling yields hyperactive MuA variants for highly efficient genetic and genome engineering. Nucleic Acids Res. 2018 05 18; 46(9):4649-4661.
Score: 0.026
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Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell. 1996 Dec 27; 87(7):1295-306.
Score: 0.023
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Retroviral integrases and their cousins. Curr Opin Struct Biol. 1996 Feb; 6(1):76-83.
Score: 0.022
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Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition and retroviral integration. Cell. 1995 Jul 28; 82(2):209-20.
Score: 0.021
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Refinement of gamma delta resolvase reveals a strikingly flexible molecule. Structure. 1994 May 15; 2(5):371-84.
Score: 0.019
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Model for a DNA-mediated synaptic complex suggested by crystal packing of gamma delta resolvase subunits. EMBO J. 1994 Apr 01; 13(7):1514-24.
Score: 0.019
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Global analysis of ion dependence unveils hidden steps in DNA binding and bending by integration host factor. J Chem Phys. 2013 Sep 28; 139(12):121927.
Score: 0.019
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The ยต transpososome structure sheds light on DDE recombinase evolution. Nature. 2012 Nov 15; 491(7424):413-7.
Score: 0.018
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Mapping the transition state for DNA bending by IHF. J Mol Biol. 2012 May 18; 418(5):300-15.
Score: 0.017
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Automated real-space refinement of protein structures using a realistic backbone move set. Biophys J. 2011 Aug 17; 101(4):899-909.
Score: 0.016
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Regulation of Rad51 function by phosphorylation. EMBO Rep. 2011 Jul 08; 12(8):833-9.
Score: 0.016
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Ribosomal protein L7/L12 has a helix-turn-helix motif similar to that found in DNA-binding regulatory proteins. Nucleic Acids Res. 1989 May 25; 17(10):3757-62.
Score: 0.014
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Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA. Nature. 2008 Apr 24; 452(7190):961-5.
Score: 0.013
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Crystallization and preliminary X-ray study of the edema factor exotoxin adenylyl cyclase domain from Bacillus anthracis in the presence of its activator, calmodulin. Acta Crystallogr D Biol Crystallogr. 2001 Dec; 57(Pt 12):1881-4.
Score: 0.008
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Structural basis of asymmetry in the human immunodeficiency virus type 1 reverse transcriptase heterodimer. Proc Natl Acad Sci U S A. 1994 Jul 19; 91(15):7242-6.
Score: 0.005
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Structure of the binding site for nonnucleoside inhibitors of the reverse transcriptase of human immunodeficiency virus type 1. Proc Natl Acad Sci U S A. 1994 Apr 26; 91(9):3911-5.
Score: 0.005
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Protein-protein interactions directing resolvase site-specific recombination: a structure-function analysis. EMBO J. 1993 Apr; 12(4):1447-58.
Score: 0.005
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Two DNA polymerases: HIV reverse transcriptase and the Klenow fragment of Escherichia coli DNA polymerase I. Cold Spring Harb Symp Quant Biol. 1993; 58:495-504.
Score: 0.004
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Crystal structure at 3.5 A resolution of HIV-1 reverse transcriptase complexed with an inhibitor. Science. 1992 Jun 26; 256(5065):1783-90.
Score: 0.004
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The crystal structure of the catalytic domain of the site-specific recombination enzyme gamma delta resolvase at 2.7 A resolution. Cell. 1990 Dec 21; 63(6):1323-9.
Score: 0.004
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Cooperativity mutants of the gamma delta resolvase identify an essential interdimer interaction. Cell. 1990 Dec 21; 63(6):1331-8.
Score: 0.004