Aaron Dinner to Algorithms
This is a "connection" page, showing publications Aaron Dinner has written about Algorithms.
Connection Strength
1.154
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Discovering transcription factor regulatory targets using gene expression and binding data. Bioinformatics. 2012 Jan 15; 28(2):206-13.
Score: 0.217
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Enhanced sampling of nonequilibrium steady states. Annu Rev Phys Chem. 2010; 61:441-59.
Score: 0.190
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Nonequilibrium umbrella sampling in spaces of many order parameters. J Chem Phys. 2009 Feb 21; 130(7):074104.
Score: 0.179
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How the nature of an observation affects single-trajectory entropies. J Chem Phys. 2008 Feb 21; 128(7):074102.
Score: 0.167
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Bootstrapping and Empirical Bayes Methods Improve Rhythm Detection in Sparsely Sampled Data. J Biol Rhythms. 2018 08; 33(4):339-349.
Score: 0.086
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Using multiscale preconditioning to accelerate the convergence of iterative molecular calculations. J Chem Phys. 2014 May 14; 140(18):184114.
Score: 0.064
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Defining cooperativity in gene regulation locally through intrinsic noise. IET Syst Biol. 2010 Nov; 4(6):379-92.
Score: 0.050
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A hybrid deterministic-stochastic algorithm for modeling cell signaling dynamics in spatially inhomogeneous environments and under the influence of external fields. J Phys Chem B. 2006 Jun 29; 110(25):12749-65.
Score: 0.037
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Monte Carlo simulations of biomolecules: The MC module in CHARMM. J Comput Chem. 2006 Jan 30; 27(2):203-16.
Score: 0.036
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Grand canonical Monte Carlo simulations of water in protein environments. J Chem Phys. 2004 Oct 01; 121(13):6392-400.
Score: 0.033
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Use of quantitative structure-property relationships to predict the folding ability of model proteins. Proteins. 1998 Nov 01; 33(2):177-203.
Score: 0.022
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Multiple Time-Step Dual-Hamiltonian Hybrid Molecular Dynamics - Monte Carlo Canonical Propagation Algorithm. J Chem Theory Comput. 2016 Apr 12; 12(4):1449-1458.
Score: 0.018
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Intergenerational continuity of cell shape dynamics in Caulobacter crescentus. Sci Rep. 2015 Mar 17; 5:9155.
Score: 0.017
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Improved predictions of transcription factor binding sites using physicochemical features of DNA. Nucleic Acids Res. 2012 Dec; 40(22):e175.
Score: 0.014
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Using the bias from flow to elucidate single DNA repair protein sliding and interactions with DNA. Biophys J. 2009 Mar 04; 96(5):1911-7.
Score: 0.011
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Conformational sampling via a self-regulating effective energy surface. J Chem Phys. 2006 May 07; 124(17):174901.
Score: 0.009