Aaron Dinner to Computer Simulation
This is a "connection" page, showing publications Aaron Dinner has written about Computer Simulation.
Connection Strength
2.039
-
Shape dynamics of growing cell walls. Soft Matter. 2016 Apr 14; 12(14):3442-50.
Score: 0.382
-
How the nature of an observation affects single-trajectory entropies. J Chem Phys. 2008 Feb 21; 128(7):074102.
Score: 0.219
-
A model for TCR gene segment use. J Immunol. 2006 Sep 15; 177(6):3857-64.
Score: 0.198
-
Monte Carlo simulations of biomolecules: The MC module in CHARMM. J Comput Chem. 2006 Jan 30; 27(2):203-16.
Score: 0.190
-
A metastable state in folding simulations of a protein model. Nat Struct Biol. 1998 Mar; 5(3):236-41.
Score: 0.110
-
Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data. PLoS Comput Biol. 2015 Mar; 11(3):e1004094.
Score: 0.089
-
Short-time evolution in the adaptive immune system. Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Sep; 84(3 Pt 1):031932.
Score: 0.070
-
Defining cooperativity in gene regulation locally through intrinsic noise. IET Syst Biol. 2010 Nov; 4(6):379-92.
Score: 0.066
-
Model for how retrograde actin flow regulates adhesion traction stresses. J Phys Condens Matter. 2010 May 19; 22(19):194113.
Score: 0.064
-
Mechanistic insights from a quantitative analysis of pollen tube guidance. BMC Plant Biol. 2010 Feb 22; 10:32.
Score: 0.063
-
CHARMM: the biomolecular simulation program. J Comput Chem. 2009 Jul 30; 30(10):1545-614.
Score: 0.060
-
Signatures of combinatorial regulation in intrinsic biological noise. Proc Natl Acad Sci U S A. 2008 Nov 11; 105(45):17262-7.
Score: 0.057
-
A two-step nucleotide-flipping mechanism enables kinetic discrimination of DNA lesions by AGT. Proc Natl Acad Sci U S A. 2008 Mar 25; 105(12):4615-20.
Score: 0.055
-
Apparent directional scanning for DNA repair. Biophys J. 2008 Jan 01; 94(1):47-52.
Score: 0.053
-
Conformational sampling via a self-regulating effective energy surface. J Chem Phys. 2006 May 07; 124(17):174901.
Score: 0.048
-
Dynamic coupling between coordinates in a model for biomolecular isomerization. J Chem Phys. 2006 Apr 14; 124(14):144911.
Score: 0.048
-
Enhancement of diffusion-controlled reaction rates by surface-induced orientational restriction. Biophys J. 2006 Feb 01; 90(3):896-902.
Score: 0.047
-
Automatic method for identifying reaction coordinates in complex systems. J Phys Chem B. 2005 Apr 14; 109(14):6769-79.
Score: 0.045
-
The roles of stability and contact order in determining protein folding rates. Nat Struct Biol. 2001 Jan; 8(1):21-2.
Score: 0.033
-
Understanding protein folding via free-energy surfaces from theory and experiment. Trends Biochem Sci. 2000 Jul; 25(7):331-9.
Score: 0.032
-
Is protein unfolding the reverse of protein folding? A lattice simulation analysis. J Mol Biol. 1999 Sep 17; 292(2):403-19.
Score: 0.030
-
Filament rigidity and connectivity tune the deformation modes of active biopolymer networks. Proc Natl Acad Sci U S A. 2017 11 21; 114(47):E10037-E10045.
Score: 0.027
-
Using multiscale preconditioning to accelerate the convergence of iterative molecular calculations. J Chem Phys. 2014 May 14; 140(18):184114.
Score: 0.021
-
Grand canonical Monte Carlo simulations of water in protein environments. J Chem Phys. 2004 Oct 01; 121(13):6392-400.
Score: 0.011
-
CD4 enhances T cell sensitivity to antigen by coordinating Lck accumulation at the immunological synapse. Nat Immunol. 2004 Aug; 5(8):791-9.
Score: 0.011
-
The immunological synapse balances T cell receptor signaling and degradation. Science. 2003 Nov 14; 302(5648):1218-22.
Score: 0.010