NipamPatel2Wt5Cqw1DO/RmHllZ0mg9mHvNipam Patel0.000000000000000.000000000000003024Patel, NipamOver the past two decades, developmental biologists have made great strides in understanding embryonic pattern formation at the genetic, molecular, and cellular levels. Much of this advancement can be attributed to the remarkable success of studies of pattern formation in model systems, such as the fruit fly Drosophila melanogaster. Identification of genes that play major roles in setting up the body plan, combined with the subsequent discovery that many of these genes are well conserved even between different phyla, has also led to a renaissance in the investigation of the links between evolution and development. Using information collected from studies of Drosophila development, my lab and others are beginning to explore the degree to which developmental pathways have been conserved or altered between various arthropods. Insights into the nature of developmental and molecular alterations will help us to understand the evolutionary changes in the mechanisms of pattern formation and provide a molecular basis for analyzing the diversification of body morphologies and developmental mechanisms.Professorplugins:FeaturedVideosFeatured Videosprns:coAuthorOfcoauthor ofprns:emailEncryptedemail addressFaculty Rankprns:fullNamefull nameprns:hasAuthorListauthor listprns:hasFacultyRankhas faculty rankprns:hasNetworkhas networkprns:hasPublicationVenuepublished inprns:informationResourceReferenceinformation resource referenceprns:isPrimaryPositionis primary positionprns:latitudelatitudeprns:longitudelongitudeprns:mainImagephotoprns:maxWeightmaximum weightprns:medlineTAjournal title abbreviationprns:meshDescriptorUIMeSH DescriptorUIprns:meshSemanticGroupNameMeSH semantic group nameprns:minWeightminimum weightprns:numberOfAuthorsnumber of authorsprns:numberOfConnectionsnumber of connectionsprns:numberOfPublicationsnumber of publicationsprns:personIdPerson IDprns:personInPrimaryPositionperson in primary positionprns:physicalNeighborOfphysical neighborprns:pluginSearchableDataProfilesRNS Plugin Searchable Dataprns:positionInDepartmentposition in departmentprns:predicateNodepredicate nodeprns:publicationDatepublication dateprns:similarTosimilar toprns:sortOrdersort orderprns:uniquenessWeightuniqueness weightprns:yearyearAcademic ArticleArticleDocumentbibo:pmidPubMed IdentifierAddressvivo:addressCitycityvivo:addressPostalCodepostal codevivo:addressStatestate or provincevivo:authorInAuthorshipselected publicationsvivo:authorRankauthor rank in publicationAuthorshipDepartmentvivo:hasResearchArearesearch areasvivo:hrJobTitleHR job titleInformation Resourcevivo:linkAnchorTextlink anchor textvivo:linkedAuthorlinked authorvivo:linkedInformationResourcelinked information resourcevivo:mailingAddressmailing addressvivo:orcidIdORCID idvivo:overviewoverviewvivo:personInPositionpositionsPositionvivo:positionInOrganizationposition in organizationvivo:preferredTitlepreferred titleURLLinkvivo:webpagewebpagerdf:predicatepredicaterdf:typetyperdfs:labellabelConceptAgentfoaf:firstNamefirst namefoaf:lastNamelast nameOrganizationPersonMarkSheffieldMark Sheffield0.000000000000000.000000000000003427Sheffield, MarkAssistant ProfessorD003445Living Beings4130.980489CrustaceaEcology and EvolutionOrganismal Biology and AnatomyMedicine-RheumatologyNeurobiology28923954Mazo-Vargas A, Concha C, Livraghi L, Massardo D, Wallbank RWR, Zhang L, Papador JD, Martinez-Najera D, Jiggins CD, Kronforst MR, Breuker CJ, Reed RD, Patel NH, McMillan WO, Martin AProceedings of the National Academy of Sciences of the United States of AmericaMacroevolutionary shifts of WntA function potentiate butterfly wing-pattern diversity. Proc Natl Acad Sci U S A. 2017 10 03; 114(40):10701-10706.Proc Natl Acad Sci U S A2017-09-18T00:00:002017Macroevolutionary shifts of WntA function potentiate butterfly wing-pattern diversity.Authorship 119017829889198Farboud B, Jarvis E, Roth TL, Shin J, Corn JE, Marson A, Meyer BJ, Patel NH, Hochstrasser MLJournal of visualized experiments : JoVEEnhanced Genome Editing with Cas9 Ribonucleoprotein in Diverse Cells and Organisms. J Vis Exp. 2018 05 25; (135).J Vis Exp2018-05-25T00:00:002018Enhanced Genome Editing with Cas9 Ribonucleoprotein in Diverse Cells and Organisms.31183976Sun DA, Patel NHWiley interdisciplinary reviews. Developmental biologyThe amphipod crustacean Parhyale hawaiensis: An emerging comparative model of arthropod development, evolution, and regeneration. Wiley Interdiscip Rev Dev Biol. 2019 09; 8(5):e355.Wiley Interdiscip Rev Dev Biol2019-06-11T00:00:002019The amphipod crustacean Parhyale hawaiensis: An emerging comparative model of arthropod development, evolution, and regeneration.Authorship 1300322Authorship 1346348Authorship 1346354Authorship 13454413Authorship 134637530604814Allen FI, Velez NR, Thayer RC, Patel NH, Jones MA, Meyers GF, Minor AMNanoscaleGallium, neon and helium focused ion beam milling of thin films demonstrated for polymeric materials: study of implantation artifacts. Nanoscale. 2019 Jan 17; 11(3):1403-1409.Nanoscale2019-01-17T00:00:002019Gallium, neon and helium focused ion beam milling of thin films demonstrated for polymeric materials: study of implantation artifacts.30824940Krehenwinkel H, Pomerantz A, Henderson JB, Kennedy SR, Lim JY, Swamy V, Shoobridge JD, Graham N, Patel NH, Gillespie RG, Prost SGigaScienceNanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale. Gigascience. 2019 05 01; 8(5).Gigascience2019-05-01T00:00:002019Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale.29540562Curry ZA, Wilkerson JL, Bagdas D, Kyte SL, Patel N, Donvito G, Mustafa MA, Poklis JL, Niphakis MJ, Hsu KL, Cravatt BF, Gewirtz DA, Damaj MI, Lichtman AHThe Journal of pharmacology and experimental therapeuticsMonoacylglycerol Lipase Inhibitors Reverse Paclitaxel-Induced Nociceptive Behavior and Proinflammatory Markers in a Mouse Model of Chemotherapy-Induced Neuropathy. J Pharmacol Exp Ther. 2018 07; 366(1):169-183.J Pharmacol Exp Ther2018-03-14T00:00:002018Monoacylglycerol Lipase Inhibitors Reverse Paclitaxel-Induced Nociceptive Behavior and Proinflammatory Markers in a Mouse Model of Chemotherapy-Induced Neuropathy.Authorship 134642230132722Xu J, Patel NH, Saleh T, Cudjoe EK, Alotaibi M, Wu Y, Lima S, Hawkridge AM, Gewirtz DARadiation researchDifferential Radiation Sensitivity in p53 Wild-Type and p53-Deficient Tumor Cells Associated with Senescence but not Apoptosis or (Nonprotective) Autophagy. Radiat Res. 2018 11; 190(5):538-557.Radiat Res2018-08-22T00:00:002018Differential Radiation Sensitivity in p53 Wild-Type and p53-Deficient Tumor Cells Associated with Senescence but not Apoptosis or (Nonprotective) Autophagy.Authorship 136366132135156Patel NH, Xu J, Saleh T, Wu Y, Lima S, Gewirtz DABiochemical pharmacologyInfluence of nonprotective autophagy and the autophagic switch on sensitivity to cisplatin in non-small cell lung cancer cells. Biochem Pharmacol. 2020 05; 175:113896.Biochem Pharmacol2020-03-03T00:00:002020Influence of nonprotective autophagy and the autophagic switch on sensitivity to cisplatin in non-small cell lung cancer cells.Authorship 136472332093197Saleh T, Tyutyunyk-Massey L, Patel NH, Cudjoe EK, Alotaibi M, Gewirtz DAInternational journal of molecular sciencesStudies of Non-Protective Autophagy Provide Evidence that Recovery from Therapy-Induced Senescence is Independent of Early Autophagy. Int J Mol Sci. 2020 02 20; 21(4).Int J Mol Sci2020-02-20T00:00:002020Studies of Non-Protective Autophagy Provide Evidence that Recovery from Therapy-Induced Senescence is Independent of Early Autophagy.Authorship 136649332254023Thayer RC, Allen FI, Patel NHeLifeStructural color in Junonia butterflies evolves by tuning scale lamina thickness. Elife. 2020 04 07; 9.Elife2020-04-07T00:00:002020Structural color in Junonia butterflies evolves by tuning scale lamina thickness.Authorship 140220132845995Patel NH, Sohal SS, Manjili MH, Harrell JC, Gewirtz DARadiation researchThe Roles of Autophagy and Senescence in the Tumor Cell Response to Radiation. Radiat Res. 2020 08 01; 194(2):103-115.Radiat Res2020-08-01T00:00:002020The Roles of Autophagy and Senescence in the Tumor Cell Response to Radiation.Chicago60637IL6.466450.00792751312research areas0.05773370.0397633coauthor of103.38912.515860similar to1185selected publicationsAuthorship 1424512Authorship 142408233256191Xu J, Patel NH, Gewirtz DAInternational journal of molecular sciencesTriangular Relationship between p53, Autophagy, and Chemotherapy Resistance. Int J Mol Sci. 2020 Nov 26; 21(23).Int J Mol Sci2020-11-26T00:00:002020Triangular Relationship between p53, Autophagy, and Chemotherapy Resistance.33262517Bruce HS, Patel NHNature ecology & evolutionKnockout of crustacean leg patterning genes suggests that insect wings and body walls evolved from ancient leg segments. Nat Ecol Evol. 2020 12; 4(12):1703-1712.Nat Ecol Evol2020-12-01T00:00:002020Knockout of crustacean leg patterning genes suggests that insect wings and body walls evolved from ancient leg segments.Authorship 142930233383736Caillaud M, Patel NH, Toma W, White A, Thompson D, Mann J, Tran TH, Roberts JL, Poklis JL, Bigbee JW, Fang X, Gewirtz DA, Damaj MICancersA Fenofibrate Diet Prevents Paclitaxel-Induced Peripheral Neuropathy in Mice. Cancers (Basel). 2020 Dec 29; 13(1).Cancers (Basel)2020-12-29T00:00:002020A Fenofibrate Diet Prevents Paclitaxel-Induced Peripheral Neuropathy in Mice.Authorship 143259233434562Caillaud M, Patel NH, White A, Wood M, Contreras KM, Toma W, Alkhlaif Y, Roberts JL, Tran TH, Jackson AB, Poklis J, Gewirtz DA, Damaj MIBrain, behavior, and immunityTargeting Peroxisome Proliferator-Activated Receptor-a (PPAR- a) to reduce paclitaxel-induced peripheral neuropathy. Brain Behav Immun. 2021 03; 93:172-185.Brain Behav Immun2021-01-09T00:00:002021Targeting Peroxisome Proliferator-Activated Receptor-a (PPAR- a) to reduce paclitaxel-induced peripheral neuropathy.Ben May Department of Cancer ResearchOrthopedic Surgery and Rehabilitation MedicinePsychiatry and Behavioral Neuroscience-Adult PsychiatryAuthorship 144803333675555Toma W, Caillaud M, Patel NH, Tran TH, Donvito G, Roberts J, Bagdas D, Jackson A, Lichtman A, Gewirtz DA, Makriyannis A, Malamas MS, Imad Damaj MEuropean journal of pain (London, England)N-acylethanolamine-hydrolysing acid amidase: A new potential target to treat paclitaxel-induced neuropathy. Eur J Pain. 2021 07; 25(6):1367-1380.Eur J Pain2021-03-23T00:00:002021N-acylethanolamine-hydrolysing acid amidase: A new potential target to treat paclitaxel-induced neuropathy.Authorship 145952133858594Patel NH, Bloukh S, Alwohosh E, Alhesa A, Saleh T, Gewirtz DAAdvances in cancer researchAutophagy and senescence in cancer therapy. Adv Cancer Res. 2021; 150:1-74.Adv Cancer Res2021-03-12T00:00:002021Autophagy and senescence in cancer therapy.Authorship 146479933969872Pomerantz AF, Siddique RH, Cash EI, Kishi Y, Pinna C, Hammar K, Gomez D, Elias M, Patel NHThe Journal of experimental biologyDevelopmental, cellular, and biochemical basis of transparency in clearwing butterflies. J Exp Biol. 2021 May 10.J Exp Biol2021-05-10T00:00:002021Developmental, cellular, and biochemical basis of transparency in clearwing butterflies.Authorship 146760634047337Pomerantz AF, Siddique RH, Cash EI, Kishi Y, Pinna C, Hammar K, Gomez D, Elias M, Patel NHThe Journal of experimental biologyDevelopmental, cellular and biochemical basis of transparency in clearwing butterflies. J Exp Biol. 2021 05 15; 224(10).J Exp Biol2021-05-15T00:00:002021Developmental, cellular and biochemical basis of transparency in clearwing butterflies.12573218Lall S, Ludwig MZ, Patel NHCurrent biology : CBNanos plays a conserved role in axial patterning outside of the Diptera. Curr Biol. 2003 Feb 04; 13(3):224-9.Curr Biol2003-02-04T00:00:002003Nanos plays a conserved role in axial patterning outside of the Diptera.Authorship 151721234930525Pinna CS, Vilbert M, Borensztajn S, Daney de Marcillac W, Piron-Prunier F, Pomerantz A, Patel NH, Berthier S, Andraud C, Gomez D, Elias MeLifeMimicry can drive convergence in structural and light transmission features of transparent wings in Lepidoptera. Elife. 2021 12 21; 10.Elife2021-12-21T00:00:002021Mimicry can drive convergence in structural and light transmission features of transparent wings in Lepidoptera.Authorship 153584235337450Paris M, Wolff C, Patel NH, Averof MCurrent topics in developmental biologyThe crustacean model Parhyale hawaiensis. Curr Top Dev Biol. 2022; 147:199-230.Curr Top Dev Biol2022-03-14T00:00:002022The crustacean model Parhyale hawaiensis.D033304Living Beings2170.965191AmphipodaAuthorship 154931435608283Sun DA, Bredeson JV, Bruce HS, Patel NHDevelopment (Cambridge, England)Identification and classification of cis-regulatory elements in the amphipod crustacean Parhyale hawaiensis. Development. 2022 06 01; 149(11).Development2022-06-01T00:00:002022Identification and classification of cis-regulatory elements in the amphipod crustacean Parhyale hawaiensis.Authorship 155467635732224McCarthy-Taylor JB, Kelly SR, VanHook AM, Marques-Souza H, Serano JM, Patel NHDevelopmental biologyExpression of Abdominal-B in the brine shrimp, Artemia franciscana, expands our evolutionary understanding of the crustacean abdomen. Dev Biol. 2022 09; 489:178-184.Dev Biol2022-06-19T00:00:002022Expression of Abdominal-B in the brine shrimp, Artemia franciscana, expands our evolutionary understanding of the crustacean abdomen.Authorship 156247235858617Bruce HS, Patel NHCurrent biology : CBThe Daphnia carapace and other novel structures evolved via the cryptic persistence of serial homologs. Curr Biol. 2022 09 12; 32(17):3792-3799.e3.Curr Biol2022-07-19T00:00:002022The Daphnia carapace and other novel structures evolved via the cryptic persistence of serial homologs.DarliMassardoDarli Massardo0.000000000000000.000000000000003079Massardo, DarliFellowKimberlyTrotterKimberly Trotter0.000000000000000.000000000000003107Trotter, KimberlyAssistant ProfessorD015509Occupations12270.962839Developmental BiologyD019521Physiology652090.849623Body PatterningAuthorship 160860336741704Finnegan RM, Elshazly AM, Patel NH, Tyutyunyk-Massey L, Tran TH, Kumarasamy V, Knudsen ES, Gewirtz DAFrontiers in oncologyThe BET inhibitor/degrader ARV-825 prolongs the growth arrest response to Fulvestrant + Palbociclib and suppresses proliferative recovery in ER-positive breast cancer. Front Oncol. 2022; 12:966441.Front Oncol2023-01-18T00:00:002023The BET inhibitor/degrader ARV-825 prolongs the growth arrest response to Fulvestrant + Palbociclib and suppresses proliferative recovery in ER-positive breast cancer.Authorship 161036536798978Gainett G, Klementz BC, Blaszczyk PO, Bruce HS, Patel NH, Sharma PPMolecular biology and evolutionDual Functions of labial Resolve the Hox Logic of Chelicerate Head Segments. Mol Biol Evol. 2023 03 04; 40(3).Mol Biol Evol2023-03-04T00:00:002023Dual Functions of labial Resolve the Hox Logic of Chelicerate Head Segments.https://alemsegedlab.uchicago.edu/ALEMSEGED LABhttps://president.uchicago.edu/directory/nipam-patelWebsitehttps://sheffieldlab.orgSheffield lab websitehttp://voices.uchicago.edu/rebaylab/Rebay Labhttps://www.kronforstlab.org/Kronforst Lab Websitehttp://www.patellab.net/My Lab Sitehttps://ortho.uchicago.edu/p-Wolf.phpDepartment of Orthopaedic Surgery and Rehabilitation Medicinehttp://schmidtottlab.uchicago.edu/Schmidt-Ott Laboratory: Developmental Mechanisms and EvolutionD014921Anatomy28950.927081Wings, AnimalAuthorship 164348337449009Holland PW, Langdale JA, Patel NH, Stone GNFaculty reviewsDiscovery of the bicycle gene family provides new insights into insect manipulation of plant development during gall induction. Fac Rev. 2023; 12:16.Fac Rev2023-07-05T00:00:002023Discovery of the bicycle gene family provides new insights into insect manipulation of plant development during gall induction.Ecology & EvolutionMedicineUniversity of ChicagoMarcus R.KronforstMarcus R. Kronforst41.78927490000000-87.601250000000001048Kronforst, Marcus R.ProfessorRaviSalgiaRavi Salgia41.78927490000000-87.601250000000001937Salgia, RaviEmeritus/Emerita, ProfessorIlariaRebayIlaria Rebay41.78927490000000-87.601250000000002383Rebay, IlariaProfessorUrs C.Schmidt-OttUrs C. Schmidt-Ott41.78927490000000-87.601250000000002507Schmidt-Ott, Urs C.0000-0002-1351-9472ProfessorMichael Z.LudwigMichael Z. Ludwig41.78927490000000-87.60125000000000622Ludwig, Michael Z.Research Associate Professor37937662Thayer RC, Patel NHThe Journal of experimental biologyA meta-analysis of butterfly structural colors: their color range, distribution and biological production. J Exp Biol. 2023 11 01; 226(21).J Exp Biol2023-11-01T00:00:002023A meta-analysis of butterfly structural colors: their color range, distribution and biological production.Authorship 1679412true1ProfessorProfessortrue1FellowFellowtrue1ProfessorProfessortrue1Research Associate ProfessorResearch Associate Professortrue1Emeritus/Emerita, ProfessorEmeritus/Emerita, Professortrue1Assistant ProfessorAssistant Professortrue1Assistant ProfessorAssistant Professortrue1ProfessorProfessortrue1ProfessorProfessortrue1ProfessorProfessortrue1ProfessorProfessortrue1Associate ProfessorAssociate Professortrue1PROFESSORPROFESSORAuthorship 650685Authorship 651784Authorship 650385Authorship 651683Authorship 655676Authorship 656592Authorship 657973Authorship 670213Authorship 664202Authorship 681574Authorship 675087Authorship 675675Authorship 684753Authorship 691501Authorship 695773Authorship 688763Authorship 702436Authorship 703104Authorship 687742Authorship 709912Authorship 706802Authorship 710182Authorship 705133Authorship 712135Authorship 709971Authorship 713396Authorship 720196Authorship 714002Authorship 728084Authorship 731691Authorship 710611Authorship 728201Authorship 745292Authorship 733352Authorship 728192Authorship 746585Authorship 753194Authorship 7368911Authorship 747874Authorship 768184Authorship 762466Authorship 783312Authorship 779265Authorship 790003Authorship 683257Authorship 7096810Authorship 710455Authorship 719451Authorship 721372Authorship 76276322466422Hannibal RL, Price AL, Parchem RJ, Patel NHDevelopment genes and evolutionAnalysis of snail genes in the crustacean Parhyale hawaiensis: insight into snail gene family evolution. Dev Genes Evol. 2012 May; 222(3):139-51.Dev Genes Evol2012-03-31T00:00:002012Analysis of snail genes in the crustacean Parhyale hawaiensis: insight into snail gene family evolution.17152085Price AL, Patel NHJournal of experimental zoology. Part B, Molecular and developmental evolutionInvestigating divergent mechanisms of mesoderm development in arthropods: the expression of Ph-twist and Ph-mef2 in Parhyale hawaiensis. J Exp Zool B Mol Dev Evol. 2008 Jan 15; 310(1):24-40.J Exp Zool B Mol Dev Evol2008-01-15T00:00:002008Investigating divergent mechanisms of mesoderm development in arthropods: the expression of Ph-twist and Ph-mef2 in Parhyale hawaiensis.19109008Teichmann S, Patel NHCurrent opinion in genetics & developmentGenomes and evolution: multidimensional approaches to understanding diversity. Curr Opin Genet Dev. 2008 Dec; 18(6):469-71.Curr Opin Genet Dev2008-12-26T00:00:002008Genomes and evolution: multidimensional approaches to understanding diversity.11976949Duman-Scheel M, Pirkl N, Patel NHDevelopment genes and evolutionAnalysis of the expression pattern of Mysidium columbiae wingless provides evidence for conserved mesodermal and retinal patterning processes among insects and crustaceans. Dev Genes Evol. 2002 Apr; 212(3):114-23.Dev Genes Evol2002-03-01T00:00:002002Analysis of the expression pattern of Mysidium columbiae wingless provides evidence for conserved mesodermal and retinal patterning processes among insects and crustaceans.15356281Oakley TH, Gu Z, Abouheif E, Patel NH, Li WHMolecular biology and evolutionComparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data. Mol Biol Evol. 2005 Jan; 22(1):40-50.Mol Biol Evol2004-09-08T00:00:002004Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data.22037675Hannibal RL, Price AL, Patel NHDevelopmental biologyThe functional relationship between ectodermal and mesodermal segmentation in the crustacean, Parhyale hawaiensis. Dev Biol. 2012 Jan 15; 361(2):427-38.Dev Biol2011-10-12T00:00:002011The functional relationship between ectodermal and mesodermal segmentation in the crustacean, Parhyale hawaiensis.15509222Giorgianni MW, Patel NHEvolution & developmentPatterning of the branched head appendages in Schistocerca americana and Tribolium castaneum. Evol Dev. 2004 Nov-Dec; 6(6):402-10.Evol Dev2004-11-01T00:00:002004Patterning of the branched head appendages in Schistocerca americana and Tribolium castaneum.12374573Gerberding M, Patel NHGenome biologyDevelopmental biologists cast a net over sequenced genomes. Genome Biol. 2002 Sep 24; 3(10):REPORTS4032.Genome Biol2002-09-24T00:00:002002Developmental biologists cast a net over sequenced genomes.15986449Browne WE, Price AL, Gerberding M, Patel NHGenesis (New York, N.Y. : 2000)Stages of embryonic development in the amphipod crustacean, Parhyale hawaiensis. Genesis. 2005 Jul; 42(3):124-49.Genesis2005-07-01T00:00:002005Stages of embryonic development in the amphipod crustacean, Parhyale hawaiensis.12421717Gerberding M, Browne WE, Patel NHDevelopment (Cambridge, England)Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis reveals an early restriction of cell fates. Development. 2002 Dec; 129(24):5789-801.Development2002-12-01T00:00:002002Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis reveals an early restriction of cell fates.20843860Vargas-Vila MA, Hannibal RL, Parchem RJ, Liu PZ, Patel NHDevelopment (Cambridge, England)A prominent requirement for single-minded and the ventral midline in patterning the dorsoventral axis of the crustacean Parhyale hawaiensis. Development. 2010 Oct; 137(20):3469-76.Development2010-09-15T00:00:002010A prominent requirement for single-minded and the ventral midline in patterning the dorsoventral axis of the crustacean Parhyale hawaiensis.25407802Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley THBMC bioinformaticsUsing phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC Bioinformatics. 2014 Nov 19; 15:350.BMC Bioinformatics2014-11-19T00:00:002014Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.12223400Fujioka M, Yusibova GL, Patel NH, Brown SJ, Jaynes JBDevelopment (Cambridge, England)The repressor activity of Even-skipped is highly conserved, and is sufficient to activate engrailed and to regulate both the spacing and stability of parasegment boundaries. Development. 2002 Oct; 129(19):4411-21.Development2002-10-01T00:00:002002The repressor activity of Even-skipped is highly conserved, and is sufficient to activate engrailed and to regulate both the spacing and stability of parasegment boundaries.15858575Lucchetta EM, Lee JH, Fu LA, Patel NH, Ismagilov RFNatureDynamics of Drosophila embryonic patterning network perturbed in space and time using microfluidics. Nature. 2005 Apr 28; 434(7037):1134-8.Nature2005-04-28T00:00:002005Dynamics of Drosophila embryonic patterning network perturbed in space and time using microfluidics.19098895Grande C, Patel NHNatureNodal signalling is involved in left-right asymmetry in snails. Nature. 2009 Feb 19; 457(7232):1007-11.Nature2008-12-21T00:00:002008Nodal signalling is involved in left-right asymmetry in snails.21422298Protas ME, Trontelj P, Patel NHProceedings of the National Academy of Sciences of the United States of AmericaGenetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus. Proc Natl Acad Sci U S A. 2011 Apr 05; 108(14):5702-7.Proc Natl Acad Sci U S A2011-03-21T00:00:002011Genetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus.24345042Hannibal RL, Patel NHEvoDevoWhat is a segment? Evodevo. 2013 Dec 17; 4(1):35.Evodevo2013-12-17T00:00:002013What is a segment?12717812Davis GK, Patel NHBioEssays : news and reviews in molecular, cellular and developmental biologyPlaying by pair-rules? Bioessays. 2003 May; 25(5):425-9.Bioessays2003-05-01T00:00:002003Playing by pair-rules?12852844Patel NHDevelopmental cellThe ancestry of segmentation. Dev Cell. 2003 Jul; 5(1):2-4.Dev Cell2003-07-01T00:00:002003The ancestry of segmentation.22723369Jarvis E, Bruce HS, Patel NHProceedings of the National Academy of Sciences of the United States of AmericaEvolving specialization of the arthropod nervous system. Proc Natl Acad Sci U S A. 2012 Jun 26; 109 Suppl 1:10634-9.Proc Natl Acad Sci U S A2012-06-20T00:00:002012Evolving specialization of the arthropod nervous system.22782717Patel NHDevelopment (Cambridge, England)Evolutionary crossroads in developmental biology. Development. 2012 Aug; 139(15):2637-8.Development2012-08-01T00:00:002012Evolutionary crossroads in developmental biology.19666517Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NHProceedings of the National Academy of Sciences of the United States of AmericaKnockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology. Proc Natl Acad Sci U S A. 2009 Aug 18; 106(33):13892-6.Proc Natl Acad Sci U S A2009-08-04T00:00:002009Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.19666530Pavlopoulos A, Kontarakis Z, Liubicich DM, Serano JM, Akam M, Patel NH, Averof MProceedings of the National Academy of Sciences of the United States of AmericaProbing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean. Proc Natl Acad Sci U S A. 2009 Aug 18; 106(33):13897-902.Proc Natl Acad Sci U S A2009-08-04T00:00:002009Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean.16330759Aboobaker AA, Tomancak P, Patel N, Rubin GM, Lai ECProceedings of the National Academy of Sciences of the United States of AmericaDrosophila microRNAs exhibit diverse spatial expression patterns during embryonic development. Proc Natl Acad Sci U S A. 2005 Dec 13; 102(50):18017-22.Proc Natl Acad Sci U S A2005-12-05T00:00:002005Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development.20005872Price AL, Modrell MS, Hannibal RL, Patel NHDevelopmental biologyMesoderm and ectoderm lineages in the crustacean Parhyale hawaiensis display intra-germ layer compensation. Dev Biol. 2010 May 01; 341(1):256-66.Dev Biol2009-12-21T00:00:002009Mesoderm and ectoderm lineages in the crustacean Parhyale hawaiensis display intra-germ layer compensation.21669837Stillman JH, Colbourne JK, Lee CE, Patel NH, Phillips MR, Towle DW, Eads BD, Gelembuik GW, Henry RP, Johnson EA, Pfrender ME, Terwilliger NBIntegrative and comparative biologyRecent advances in crustacean genomics. Integr Comp Biol. 2008 Dec; 48(6):852-68.Integr Comp Biol2008-10-30T00:00:002008Recent advances in crustacean genomics.14638314Eichler EE, Patel NHCurrent opinion in genetics & developmentGenomes and evolution. From sequence to organism. Curr Opin Genet Dev. 2003 Dec; 13(6):559-61.Curr Opin Genet Dev2003-12-01T00:00:002003Genomes and evolution. From sequence to organism.24499528Martin A, McCulloch KJ, Patel NH, Briscoe AD, Gilbert LE, Reed RDEvoDevoMultiple recent co-options of Optix associated with novel traits in adaptive butterfly wing radiations. Evodevo. 2014 Feb 05; 5(1):7.Evodevo2014-02-05T00:00:002014Multiple recent co-options of Optix associated with novel traits in adaptive butterfly wing radiations.20147384Liu PZ, Patel NHDevelopment (Cambridge, England)giant is a bona fide gap gene in the intermediate germband insect, Oncopeltus fasciatus. Development. 2010 Mar; 137(5):835-44.Development2010-03-01T00:00:002010giant is a bona fide gap gene in the intermediate germband insect, Oncopeltus fasciatus.23229314Cheng YJ, Fang S, Tsaur SC, Chen YL, Fu HW, Patel NH, Ting CTGenes & genetic systemsReduction of germ cells in the Odysseus null mutant causes male fertility defect in Drosophila melanogaster. Genes Genet Syst. 2012; 87(4):273-6.Genes Genet Syst2012-01-01T00:00:002012Reduction of germ cells in the Odysseus null mutant causes male fertility defect in Drosophila melanogaster.20010672Patel NHNatureDevelopmental biology: Asymmetry with a twist. Nature. 2009 Dec 10; 462(7274):727-8.Nature2009-12-10T00:00:002009Developmental biology: Asymmetry with a twist.23046627Chaw RC, Patel NHDevelopmental biologyIndependent migration of cell populations in the early gastrulation of the amphipod crustacean Parhyale hawaiensis. Dev Biol. 2012 Nov 01; 371(1):94-109.Dev Biol2012-08-27T00:00:002012Independent migration of cell populations in the early gastrulation of the amphipod crustacean Parhyale hawaiensis.20147025Rehm EJ, Hannibal RL, Chaw RC, Vargas-Vila MA, Patel NHCold Spring Harbor protocolsIn situ hybridization of labeled RNA probes to fixed Parhyale hawaiensis embryos. Cold Spring Harb Protoc. 2009 Jan; 2009(1):pdb.prot5130.Cold Spring Harb Protoc2009-01-01T00:00:002009In situ hybridization of labeled RNA probes to fixed Parhyale hawaiensis embryos.18593352Protas ME, Patel NHAnnual review of cell and developmental biologyEvolution of coloration patterns. Annu Rev Cell Dev Biol. 2008; 24:425-46.Annu Rev Cell Dev Biol2008-01-01T00:00:002008Evolution of coloration patterns.20147024Rehm EJ, Hannibal RL, Chaw RC, Vargas-Vila MA, Patel NHCold Spring Harbor protocolsAntibody staining of Parhyale hawaiensis embryos. Cold Spring Harb Protoc. 2009 Jan; 2009(1):pdb.prot5129.Cold Spring Harb Protoc2009-01-01T00:00:002009Antibody staining of Parhyale hawaiensis embryos.20147009Rehm EJ, Hannibal RL, Chaw RC, Vargas-Vila MA, Patel NHCold Spring Harbor protocolsThe crustacean Parhyale hawaiensis: a new model for arthropod development. Cold Spring Harb Protoc. 2009 Jan; 2009(1):pdb.emo114.Cold Spring Harb Protoc2009-01-01T00:00:002009The crustacean Parhyale hawaiensis: a new model for arthropod development.11729088Davis GK, Patel NHAnnual review of entomologyShort, long, and beyond: molecular and embryological approaches to insect segmentation. Annu Rev Entomol. 2002; 47:669-99.Annu Rev Entomol2002-01-01T00:00:002002Short, long, and beyond: molecular and embryological approaches to insect segmentation.20147023Rehm EJ, Hannibal RL, Chaw RC, Vargas-Vila MA, Patel NHCold Spring Harbor protocolsInjection of Parhyale hawaiensis blastomeres with fluorescently labeled tracers. Cold Spring Harb Protoc. 2009 Jan; 2009(1):pdb.prot5128.Cold Spring Harb Protoc2009-01-01T00:00:002009Injection of Parhyale hawaiensis blastomeres with fluorescently labeled tracers.11845195Patel NH, Lall SNaturePrecision patterning. Nature. 2002 Feb 14; 415(6873):748-9.Nature2002-02-14T00:00:002002Precision patterning.24930704Dinwiddie A, Null R, Pizzano M, Chuong L, Leigh Krup A, Ee Tan H, Patel NHDevelopmental biologyDynamics of F-actin prefigure the structure of butterfly wing scales. Dev Biol. 2014 Aug 15; 392(2):404-18.Dev Biol2014-06-12T00:00:002014Dynamics of F-actin prefigure the structure of butterfly wing scales.18606120VanHook AM, Patel NHCurrent biology : CBCrustaceans. Curr Biol. 2008 Jul 08; 18(13):R547-50.Curr Biol2008-07-08T00:00:002008Crustaceans.16885968Patel NHNatureEvolutionary biology: how to build a longer beak. Nature. 2006 Aug 03; 442(7102):515-6.Nature2006-08-03T00:00:002006Evolutionary biology: how to build a longer beak.17627807Parchem RJ, Perry MW, Patel NHCurrent opinion in genetics & developmentPatterns on the insect wing. Curr Opin Genet Dev. 2007 Aug; 17(4):300-8.Curr Opin Genet Dev2007-07-12T00:00:002007Patterns on the insect wing.16083872Davis GK, D'Alessio JA, Patel NHDevelopmental biologyPax3/7 genes reveal conservation and divergence in the arthropod segmentation hierarchy. Dev Biol. 2005 Sep 01; 285(1):169-84.Dev Biol2005-09-01T00:00:002005Pax3/7 genes reveal conservation and divergence in the arthropod segmentation hierarchy.20147022Rehm EJ, Hannibal RL, Chaw RC, Vargas-Vila MA, Patel NHCold Spring Harbor protocolsFixation and dissection of Parhyale hawaiensis embryos. Cold Spring Harb Protoc. 2009 Jan; 2009(1):pdb.prot5127.Cold Spring Harb Protoc2009-01-01T00:00:002009Fixation and dissection of Parhyale hawaiensis embryos.15304653Ting CT, Tsaur SC, Sun S, Browne WE, Chen YC, Patel NH, Wu CIProceedings of the National Academy of Sciences of the United States of AmericaGene duplication and speciation in Drosophila: evidence from the Odysseus locus. Proc Natl Acad Sci U S A. 2004 Aug 17; 101(33):12232-5.Proc Natl Acad Sci U S A2004-08-10T00:00:002004Gene duplication and speciation in Drosophila: evidence from the Odysseus locus.15343315Patel NHNatureEvolutionary biology: time, space and genomes. Nature. 2004 Sep 02; 431(7004):28-9.Nature2004-09-02T00:00:002004Evolutionary biology: time, space and genomes.13129849Fujioka M, Lear BC, Landgraf M, Yusibova GL, Zhou J, Riley KM, Patel NH, Jaynes JBDevelopment (Cambridge, England)Even-skipped, acting as a repressor, regulates axonal projections in Drosophila. Development. 2003 Nov; 130(22):5385-400.Development2003-09-16T00:00:002003Even-skipped, acting as a repressor, regulates axonal projections in Drosophila.20298775Parchem RJ, Poulin F, Stuart AB, Amemiya CT, Patel NHGenomicsBAC library for the amphipod crustacean, Parhyale hawaiensis. Genomics. 2010 May; 95(5):261-7.Genomics2010-03-16T00:00:002010BAC library for the amphipod crustacean, Parhyale hawaiensis.1010Authorship 81655226079281Rebeiz M, Patel NH, Hinman VFAnnual review of genomics and human geneticsUnraveling the Tangled Skein: The Evolution of Transcriptional Regulatory Networks in Development. Annu Rev Genomics Hum Genet. 2015; 16:103-31.Annu Rev Genomics Hum Genet2015-05-20T00:00:002015Unraveling the Tangled Skein: The Evolution of Transcriptional Regulatory Networks in Development.Authorship 83558526462237Stahl BA, Gross JB, Speiser DI, Oakley TH, Patel NH, Gould DB, Protas MEPloS oneA Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus. PLoS One. 2015; 10(10):e0140484.PLoS One2015-10-13T00:00:002015A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus.Authorship 85071926569556Serano JM, Martin A, Liubicich DM, Jarvis E, Bruce HS, La K, Browne WE, Grimwood J, Patel NHDevelopmental biologyComprehensive analysis of Hox gene expression in the amphipod crustacean Parhyale hawaiensis. Dev Biol. 2016 Jan 01; 409(1):297-309.Dev Biol2015-11-10T00:00:002015Comprehensive analysis of Hox gene expression in the amphipod crustacean Parhyale hawaiensis.Authorship 85552926687626Martin A, Serano JM, Jarvis E, Bruce HS, Wang J, Ray S, Barker CA, O'Connell LC, Patel NHCurrent biology : CBCRISPR/Cas9 Mutagenesis Reveals Versatile Roles of Hox Genes in Crustacean Limb Specification and Evolution. Curr Biol. 2016 Jan 11; 26(1):14-26.Curr Biol2015-12-10T00:00:002015CRISPR/Cas9 Mutagenesis Reveals Versatile Roles of Hox Genes in Crustacean Limb Specification and Evolution.Authorship 908241227189985Battelle BA, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx PJ, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter MLGenome biology and evolutionOpsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata). Genome Biol Evol. 2016 06 03; 8(5):1571-89.Genome Biol Evol2016-06-03T00:00:002016Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata).JenniferWolfJennifer Wolf0.000000000000000.000000000000003323Wolf, JenniferProfessorZerayAlemsegedZeray Alemseged0.000000000000000.000000000000003351Alemseged, ZerayProfessorErinZahradnikErin Zahradnik0.000000000000000.000000000000003377Zahradnik, ErinAssociate ProfessorAuthorship 93785126672091Patel N, Vicente CDevelopment (Cambridge, England)An interview with Nipam Patel. Development. 2015 Dec 15; 142(24):4189-90.Development2015-12-15T00:00:002015An interview with Nipam Patel.Statistics JohnReinitzxWdgBagBA8zMknJtY0fp/Cv/+94=John Reinitz0.000000000000000.000000000000002831Reinitz, JohnPROFESSORAuthorship 968891727849518Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N, Jarvis E, Di Donfrancesco A, Pouchkina-Stancheva N, Sémon M, Grillo M, Bruce H, Kumar S, Siwanowicz I, Le A, Lemire A, Eisen MB, Extavour C, Browne WE, Wolff C, Averof M, Patel NH, Sarkies P, Pavlopoulos A, Aboobaker AeLifeThe genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion. Elife. 2016 11 16; 5.Elife2016-11-16T00:00:002016The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.