Matthew Stephens to Algorithms
This is a "connection" page, showing publications Matthew Stephens has written about Algorithms.
Connection Strength
1.685
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Visualizing the structure of RNA-seq expression data using grade of membership models. PLoS Genet. 2017 Mar; 13(3):e1006599.
Score: 0.333
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msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding. PLoS One. 2015; 10(9):e0138030.
Score: 0.300
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Efficient multivariate linear mixed model algorithms for genome-wide association studies. Nat Methods. 2014 Apr; 11(4):407-9.
Score: 0.269
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Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am J Hum Genet. 2005 Mar; 76(3):449-62.
Score: 0.143
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GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership. Genome Biol. 2023 10 19; 24(1):236.
Score: 0.131
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A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures. PLoS Genet. 2015 Dec; 11(12):e1005657.
Score: 0.076
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A unified framework for association analysis with multiple related phenotypes. PLoS One. 2013; 8(7):e65245.
Score: 0.064
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Polygenic modeling with bayesian sparse linear mixed models. PLoS Genet. 2013; 9(2):e1003264.
Score: 0.063
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msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots. Bioinformatics. 2007 Feb 15; 23(4):520-1.
Score: 0.041
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Automating resequencing-based detection of insertion-deletion polymorphisms. Nat Genet. 2006 Dec; 38(12):1457-62.
Score: 0.041
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Automating sequence-based detection and genotyping of SNPs from diploid samples. Nat Genet. 2006 Mar; 38(3):375-81.
Score: 0.039
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A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet. 2006 Mar; 78(3):437-50.
Score: 0.038
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Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics. 2003 Dec; 165(4):2213-33.
Score: 0.033
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A comparison of bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet. 2003 Nov; 73(5):1162-9.
Score: 0.033
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Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics. 2003 Aug; 164(4):1567-87.
Score: 0.032
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Accurate genomic prediction of Coffea canephora in multiple environments using whole-genome statistical models. Heredity (Edinb). 2019 03; 122(3):261-275.
Score: 0.023
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fastSTRUCTURE: variational inference of population structure in large SNP data sets. Genetics. 2014 Jun; 197(2):573-89.
Score: 0.017
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Probabilistic segmentation and intensity estimation for microarray images. Biostatistics. 2006 Jan; 7(1):85-99.
Score: 0.009