Matthew Stephens to Models, Genetic
This is a "connection" page, showing publications Matthew Stephens has written about Models, Genetic.
Connection Strength
5.014
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A flexible empirical Bayes approach to multivariate multiple regression, and its improved accuracy in predicting multi-tissue gene expression from genotypes. PLoS Genet. 2023 07; 19(7):e1010539.
Score: 0.628
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Fine-mapping from summary data with the "Sum of Single Effects" model. PLoS Genet. 2022 07; 18(7):e1010299.
Score: 0.587
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Bayesian multivariate reanalysis of large genetic studies identifies many new associations. PLoS Genet. 2019 10; 15(10):e1008431.
Score: 0.484
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Large-scale genome-wide enrichment analyses identify new trait-associated genes and pathways across 31 human phenotypes. Nat Commun. 2018 10 19; 9(1):4361.
Score: 0.453
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Visualizing spatial population structure with estimated effective migration surfaces. Nat Genet. 2016 Jan; 48(1):94-100.
Score: 0.371
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msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding. PLoS One. 2015; 10(9):e0138030.
Score: 0.366
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A unified framework for association analysis with multiple related phenotypes. PLoS One. 2013; 8(7):e65245.
Score: 0.314
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Fast and accurate estimation of the population-scaled mutation rate, theta, from microsatellite genotype data. Genetics. 2007 Jun; 176(2):1363-6.
Score: 0.206
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msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots. Bioinformatics. 2007 Feb 15; 23(4):520-1.
Score: 0.199
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Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am J Hum Genet. 2005 Mar; 76(3):449-62.
Score: 0.175
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Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics. 2003 Dec; 165(4):2213-33.
Score: 0.161
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Separating measurement and expression models clarifies confusion in single-cell RNA sequencing analysis. Nat Genet. 2021 06; 53(6):770-777.
Score: 0.136
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Accurate genomic prediction of Coffea canephora in multiple environments using whole-genome statistical models. Heredity (Edinb). 2019 03; 122(3):261-275.
Score: 0.111
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Estimating Time to the Common Ancestor for a Beneficial Allele. Mol Biol Evol. 2018 04 01; 35(4):1003-1017.
Score: 0.109
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fastSTRUCTURE: variational inference of population structure in large SNP data sets. Genetics. 2014 Jun; 197(2):573-89.
Score: 0.083
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Polygenic modeling with bayesian sparse linear mixed models. PLoS Genet. 2013; 9(2):e1003264.
Score: 0.076
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Genome-wide efficient mixed-model analysis for association studies. Nat Genet. 2012 Jun 17; 44(7):821-4.
Score: 0.073
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Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis. PLoS Genet. 2010 Sep 16; 6(9):e1001117.
Score: 0.065
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Practical issues in imputation-based association mapping. PLoS Genet. 2008 Dec; 4(12):e1000279.
Score: 0.057
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Linkage disequilibrium-based quality control for large-scale genetic studies. PLoS Genet. 2008 Aug 01; 4(8):e1000147.
Score: 0.056
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Using DNA to track the origin of the largest ivory seizure since the 1989 trade ban. Proc Natl Acad Sci U S A. 2007 Mar 06; 104(10):4228-33.
Score: 0.051
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A comparison of bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet. 2003 Nov; 73(5):1162-9.
Score: 0.040
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Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics. 2003 Aug; 164(4):1567-87.
Score: 0.039
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Detailed modeling of positive selection improves detection of cancer driver genes. Nat Commun. 2019 07 30; 10(1):3399.
Score: 0.030
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Discovery and characterization of variance QTLs in human induced pluripotent stem cells. PLoS Genet. 2019 04; 15(4):e1008045.
Score: 0.029
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Genotyping Polyploids from Messy Sequencing Data. Genetics. 2018 11; 210(3):789-807.
Score: 0.028
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New evidence for hybrid zones of forest and savanna elephants in Central and West Africa. Mol Ecol. 2015 12; 24(24):6134-47.
Score: 0.023
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An estimate of the average number of recessive lethal mutations carried by humans. Genetics. 2015 Apr; 199(4):1243-54.
Score: 0.022
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Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13). PLoS One. 2012; 7(8):e42646.
Score: 0.018
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High-resolution mapping of expression-QTLs yields insight into human gene regulation. PLoS Genet. 2008 Oct; 4(10):e1000214.
Score: 0.014
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Absence of the TAP2 human recombination hotspot in chimpanzees. PLoS Biol. 2004 Jun; 2(6):e155.
Score: 0.010