Matthew Stephens to Software
This is a "connection" page, showing publications Matthew Stephens has written about Software.
Connection Strength
2.164
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Accelerated dimensionality reduction of single-cell RNA sequencing data with fastglmpca. Bioinformatics. 2024 08 02; 40(8).
Score: 0.642
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Creating and sharing reproducible research code the workflowr way. F1000Res. 2019; 8:1749.
Score: 0.460
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Visualizing spatial population structure with estimated effective migration surfaces. Nat Genet. 2016 Jan; 48(1):94-100.
Score: 0.352
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msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots. Bioinformatics. 2007 Feb 15; 23(4):520-1.
Score: 0.189
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A new sequence logo plot to highlight enrichment and depletion. BMC Bioinformatics. 2018 Dec 10; 19(1):473.
Score: 0.109
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Efficient multivariate linear mixed model algorithms for genome-wide association studies. Nat Methods. 2014 Apr; 11(4):407-9.
Score: 0.078
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Polygenic modeling with bayesian sparse linear mixed models. PLoS Genet. 2013; 9(2):e1003264.
Score: 0.072
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Genome-wide efficient mixed-model analysis for association studies. Nat Genet. 2012 Jun 17; 44(7):821-4.
Score: 0.069
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Practical issues in imputation-based association mapping. PLoS Genet. 2008 Dec; 4(12):e1000279.
Score: 0.054
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Imputation-based analysis of association studies: candidate regions and quantitative traits. PLoS Genet. 2007 Jul; 3(7):e114.
Score: 0.049
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Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am J Hum Genet. 2005 Mar; 76(3):449-62.
Score: 0.042
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A comparison of bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet. 2003 Nov; 73(5):1162-9.
Score: 0.038
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Traces of human migrations in Helicobacter pylori populations. Science. 2003 Mar 07; 299(5612):1582-5.
Score: 0.009