Matthew Stephens to Polymorphism, Single Nucleotide
This is a "connection" page, showing publications Matthew Stephens has written about Polymorphism, Single Nucleotide.
Connection Strength
3.453
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A flexible empirical Bayes approach to multivariate multiple regression, and its improved accuracy in predicting multi-tissue gene expression from genotypes. PLoS Genet. 2023 07; 19(7):e1010539.
Score: 0.506
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Fine-mapping from summary data with the "Sum of Single Effects" model. PLoS Genet. 2022 07; 18(7):e1010299.
Score: 0.473
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A multivariate genome-wide association analysis of 10 LDL subfractions, and their response to statin treatment, in 1868 Caucasians. PLoS One. 2015; 10(4):e0120758.
Score: 0.286
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Efficient multivariate linear mixed model algorithms for genome-wide association studies. Nat Methods. 2014 Apr; 11(4):407-9.
Score: 0.264
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Genome-wide efficient mixed-model analysis for association studies. Nat Genet. 2012 Jun 17; 44(7):821-4.
Score: 0.235
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Bayesian statistical methods for genetic association studies. Nat Rev Genet. 2009 Oct; 10(10):681-90.
Score: 0.195
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Linkage disequilibrium-based quality control for large-scale genetic studies. PLoS Genet. 2008 Aug 01; 4(8):e1000147.
Score: 0.180
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Imputation-based analysis of association studies: candidate regions and quantitative traits. PLoS Genet. 2007 Jul; 3(7):e114.
Score: 0.166
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Automating sequence-based detection and genotyping of SNPs from diploid samples. Nat Genet. 2006 Mar; 38(3):375-81.
Score: 0.152
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Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics. 2003 Dec; 165(4):2213-33.
Score: 0.130
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Bayesian multivariate reanalysis of large genetic studies identifies many new associations. PLoS Genet. 2019 10; 15(10):e1008431.
Score: 0.098
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Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions. Nat Genet. 2019 01; 51(1):187-195.
Score: 0.092
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Large-scale genome-wide enrichment analyses identify new trait-associated genes and pathways across 31 human phenotypes. Nat Commun. 2018 10 19; 9(1):4361.
Score: 0.091
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fastSTRUCTURE: variational inference of population structure in large SNP data sets. Genetics. 2014 Jun; 197(2):573-89.
Score: 0.067
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Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's disease. PLoS Genet. 2013; 9(10):e1003770.
Score: 0.064
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Practical issues in imputation-based association mapping. PLoS Genet. 2008 Dec; 4(12):e1000279.
Score: 0.046
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A second generation human haplotype map of over 3.1 million SNPs. Nature. 2007 Oct 18; 449(7164):851-61.
Score: 0.043
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A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet. 2006 Mar; 78(3):437-50.
Score: 0.038
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The effects of genotype-dependent recombination, and transmission asymmetry, on linkage disequilibrium. Genetics. 2006 Mar; 172(3):2001-5.
Score: 0.038
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Evidence for substantial fine-scale variation in recombination rates across the human genome. Nat Genet. 2004 Jul; 36(7):700-6.
Score: 0.034
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Adjusting for genetic confounders in transcriptome-wide association studies improves discovery of risk genes of complex traits. Nat Genet. 2024 Feb; 56(2):336-347.
Score: 0.033
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Fine-mapping studies distinguish genetic risks for childhood- and adult-onset asthma in the HLA region. Genome Med. 2022 05 24; 14(1):55.
Score: 0.029
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Genotyping Polyploids from Messy Sequencing Data. Genetics. 2018 11; 210(3):789-807.
Score: 0.023
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The genetic architecture of gene expression levels in wild baboons. Elife. 2015 Feb 25; 4.
Score: 0.018
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A statin-dependent QTL for GATM expression is associated with statin-induced myopathy. Nature. 2013 Oct 17; 502(7471):377-80.
Score: 0.016
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Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13). PLoS One. 2012; 7(8):e42646.
Score: 0.015
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DNase?I sensitivity QTLs are a major determinant of human expression variation. Nature. 2012 Feb 05; 482(7385):390-4.
Score: 0.014
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Dissecting the regulatory architecture of gene expression QTLs. Genome Biol. 2012 Jan 31; 13(1):R7.
Score: 0.014
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Genome-wide association of lipid-lowering response to statins in combined study populations. PLoS One. 2010 Mar 22; 5(3):e9763.
Score: 0.013
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Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature. 2010 Apr 01; 464(7289):768-72.
Score: 0.013
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High-resolution mapping of expression-QTLs yields insight into human gene regulation. PLoS Genet. 2008 Oct; 4(10):e1000214.
Score: 0.011
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Genes mirror geography within Europe. Nature. 2008 Nov 06; 456(7218):98-101.
Score: 0.011
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Polymorphisms of the HNF1A gene encoding hepatocyte nuclear factor-1 alpha are associated with C-reactive protein. Am J Hum Genet. 2008 May; 82(5):1193-201.
Score: 0.011
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Genome-wide detection and characterization of positive selection in human populations. Nature. 2007 Oct 18; 449(7164):913-8.
Score: 0.011
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Automating resequencing-based detection of insertion-deletion polymorphisms. Nat Genet. 2006 Dec; 38(12):1457-62.
Score: 0.010
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Conservation of hotspots for recombination in low-copy repeats associated with the NF1 microdeletion. Nat Genet. 2006 Dec; 38(12):1419-23.
Score: 0.010
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Absence of the TAP2 human recombination hotspot in chimpanzees. PLoS Biol. 2004 Jun; 2(6):e155.
Score: 0.008