Tao Pan to Nucleic Acid Conformation
This is a "connection" page, showing publications Tao Pan has written about Nucleic Acid Conformation.
Connection Strength
4.277
-
N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions. Nature. 2015 Feb 26; 518(7540):560-4.
Score: 0.406
-
Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures. Proc Natl Acad Sci U S A. 2007 Nov 13; 104(46):17995-8000.
Score: 0.244
-
In vivo structure profiling reveals human cytosolic and mitochondrial tRNA structurome and interactome in response to stress. Nat Commun. 2025 May 30; 16(1):5041.
Score: 0.206
-
Mechanistic insights on the folding of a large ribozyme during transcription. Biochemistry. 2005 May 24; 44(20):7535-42.
Score: 0.206
-
Quantification of tRNA m1A modification by templated-ligation qPCR. RNA. 2024 05 16; 30(6):739-747.
Score: 0.192
-
RNA folding: models and perspectives. Curr Opin Struct Biol. 2003 Jun; 13(3):309-16.
Score: 0.180
-
Probing RNA structure by lead cleavage. Curr Protoc Nucleic Acid Chem. 2001 May; Chapter 6:Unit 6.3.
Score: 0.156
-
Altering the intermediate in the equilibrium folding of unmodified yeast tRNAPhe with monovalent and divalent cations. Biochemistry. 2001 Mar 27; 40(12):3629-38.
Score: 0.155
-
Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding. Biochemistry. 1999 Dec 21; 38(51):16831-9.
Score: 0.142
-
Pathway modulation, circular permutation and rapid RNA folding under kinetic control. J Mol Biol. 1999 Feb 26; 286(3):721-31.
Score: 0.134
-
N6-methyladenosine alters RNA structure to regulate binding of a low-complexity protein. Nucleic Acids Res. 2017 Jun 02; 45(10):6051-6063.
Score: 0.119
-
Domain structure of the ribozyme from eubacterial ribonuclease P. RNA. 1996 Jun; 2(6):551-63.
Score: 0.111
-
N6-methyladenosine–encoded epitranscriptomics. Nat Struct Mol Biol. 2016 Feb; 23(2):98-102.
Score: 0.108
-
A dual fluorescent reporter for the investigation of methionine mistranslation in live cells. RNA. 2016 Mar; 22(3):467-76.
Score: 0.108
-
Probing of tertiary interactions in RNA: 2'-hydroxyl-base contacts between the RNase P RNA and pre-tRNA. Proc Natl Acad Sci U S A. 1995 Dec 19; 92(26):12510-4.
Score: 0.107
-
N(6)-Methyladenosine Modification in a Long Noncoding RNA Hairpin Predisposes Its Conformation to Protein Binding. J Mol Biol. 2016 Feb 27; 428(5 Pt A):822-833.
Score: 0.105
-
Novel RNA substrates for the ribozyme from Bacillus subtilis ribonuclease P identified by in vitro selection. Biochemistry. 1995 Jul 04; 34(26):8458-64.
Score: 0.104
-
Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA. RNA. 2013 Dec; 19(12):1848-56.
Score: 0.092
-
Discovering RNA-protein interactome by using chemical context profiling of the RNA-protein interface. Cell Rep. 2013 May 30; 3(5):1703-13.
Score: 0.089
-
Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch. Proc Natl Acad Sci U S A. 2012 Feb 28; 109(9):3323-8.
Score: 0.082
-
Functional analysis of human tRNA isodecoders. J Mol Biol. 2010 Feb 26; 396(3):821-31.
Score: 0.071
-
RNA folding during transcription: protocols and studies. Methods Enzymol. 2009; 468:167-93.
Score: 0.066
-
Single-molecule nonequilibrium periodic Mg2+-concentration jump experiments reveal details of the early folding pathways of a large RNA. Proc Natl Acad Sci U S A. 2008 May 06; 105(18):6602-7.
Score: 0.063
-
Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium. RNA. 2006 Apr; 12(4):598-606.
Score: 0.055
-
RNA folding during transcription. Annu Rev Biophys Biomol Struct. 2006; 35:161-75.
Score: 0.054
-
Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 2005 Sep 23; 352(3):712-22.
Score: 0.053
-
tRNA as an assembly chaperone for a macromolecular transcription-processing complex. Nat Struct Mol Biol. 2025 Nov; 32(11):2349-2358.
Score: 0.053
-
Crystal structure of the RNA component of bacterial ribonuclease P. Nature. 2005 Sep 22; 437(7058):584-7.
Score: 0.052
-
Reduced contact order and RNA folding rates. J Mol Biol. 2004 Oct 01; 342(5):1359-65.
Score: 0.049
-
Exploring the regulation of tRNA distribution on the genomic scale. J Mol Biol. 2004 Mar 12; 337(1):31-47.
Score: 0.047
-
Stepwise conversion of a mesophilic to a thermophilic ribozyme. J Mol Biol. 2003 Jul 04; 330(2):177-83.
Score: 0.045
-
Crystal structure of the specificity domain of ribonuclease P. Nature. 2003 Feb 13; 421(6924):760-4.
Score: 0.044
-
Dimeric and monomeric Bacillus subtilis RNase P holoenzyme in the absence and presence of pre-tRNA substrates. Biochemistry. 2002 Oct 29; 41(43):12986-94.
Score: 0.043
-
The rate-limiting step in the folding of a large ribozyme without kinetic traps. Proc Natl Acad Sci U S A. 2002 Jun 25; 99(13):8518-23.
Score: 0.042
-
Modular construction of a tertiary RNA structure: the specificity domain of the Bacillus subtilis RNase P RNA. Biochemistry. 2001 Sep 18; 40(37):11202-10.
Score: 0.040
-
Mg2+-dependent compaction and folding of yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by small-angle X-ray scattering. Biochemistry. 2000 Sep 12; 39(36):11107-13.
Score: 0.037
-
Probing RNA structure and function, by circular permutation. Methods Enzymol. 2000; 317:313-30.
Score: 0.035
-
A thermodynamic framework and cooperativity in the tertiary folding of a Mg2+-dependent ribozyme. Biochemistry. 1999 Dec 21; 38(51):16840-6.
Score: 0.035
-
Mg2+-dependent folding of a large ribozyme without kinetic traps. Nat Struct Biol. 1999 Dec; 6(12):1091-5.
Score: 0.035
-
Design and isolation of ribozyme-substrate pairs using RNase P-based ribozymes containing altered substrate binding sites. Nucleic Acids Res. 1999 Nov 01; 27(21):4298-304.
Score: 0.035
-
RNA modification landscape of the human mitochondrial tRNALys regulates protein synthesis. Nat Commun. 2018 09 27; 9(1):3966.
Score: 0.032
-
Interaction of structural modules in substrate binding by the ribozyme from Bacillus subtilis RNase P. Nucleic Acids Res. 1998 Aug 15; 26(16):3717-23.
Score: 0.032
-
RNA modifications and structures cooperate to guide RNA-protein interactions. Nat Rev Mol Cell Biol. 2017 03; 18(3):202-210.
Score: 0.029
-
Multiple substrate binding sites in the ribozyme from Bacillus subtilis RNase P. EMBO J. 1996 May 01; 15(9):2249-55.
Score: 0.028
-
Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P. Biochemistry. 1995 Jan 24; 34(3):902-9.
Score: 0.025
-
Selection of circularly permuted ribozymes from Bacillus subtilis RNAse P by substrate binding. Biochemistry. 1994 Nov 29; 33(47):14207-12.
Score: 0.025
-
Reversible and rapid transfer-RNA deactivation as a mechanism of translational repression in stress. PLoS Genet. 2013 Aug; 9(8):e1003767.
Score: 0.023
-
Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress. J Biol Chem. 2012 Dec 14; 287(51):42708-25.
Score: 0.022
-
Extended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion. J Mol Biol. 2010 Apr 16; 397(5):1298-306.
Score: 0.018
-
A large collapsed-state RNA can exhibit simple exponential single-molecule dynamics. J Mol Biol. 2008 May 09; 378(4):943-53.
Score: 0.016
-
Structure of ribonuclease P--a universal ribozyme. Curr Opin Struct Biol. 2006 Jun; 16(3):327-35.
Score: 0.014
-
Basis for structural diversity in homologous RNAs. Science. 2004 Oct 01; 306(5693):104-7.
Score: 0.012