Co-Authors
This is a "connection" page, showing publications co-authored by Peter Carbonetto and Matthew Stephens.
Connection Strength
5.803
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Non-negative matrix factorization algorithms generally improve topic model fits. Stat Comput. 2026; 36(3):131.
Score: 0.970
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GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership. Genome Biol. 2023 10 19; 24(1):236.
Score: 0.813
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Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's disease. PLoS Genet. 2013; 9(10):e1003770.
Score: 0.405
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Fast and flexible joint fine-mapping of multiple traits via the Sum of Single Effects model. Nat Genet. 2026 Feb; 58(2):454-462.
Score: 0.238
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ebnm: An R Package for Solving the Empirical Bayes Normal Means Problem Using a Variety of Prior Families. J Stat Softw. 2025; 114.
Score: 0.232
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fSuSiE enables fine-mapping of QTLs from genome-scale molecular profiles. bioRxiv. 2025 Aug 17.
Score: 0.231
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BAYESIAN VARIABLE SELECTION IN A COX PROPORTIONAL HAZARDS MODEL WITH THE "SUM OF SINGLE EFFECTS" PRIOR. ArXiv. 2025 Jun 06.
Score: 0.228
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Dissecting tumor transcriptional heterogeneity from single-cell RNA-seq data by generalized binary covariance decomposition. Nat Genet. 2025 01; 57(1):263-273.
Score: 0.221
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Accelerated dimensionality reduction of single-cell RNA sequencing data with fastglmpca. Bioinformatics. 2024 08 02; 40(8).
Score: 0.215
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Accelerated dimensionality reduction of single-cell RNA sequencing data with fastglmpca. bioRxiv. 2024 Jul 04.
Score: 0.213
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Fast and flexible joint fine-mapping of multiple traits via the Sum of Single Effects model. bioRxiv. 2024 Jun 18.
Score: 0.213
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Dissecting tumor transcriptional heterogeneity from single-cell RNA-seq data by generalized binary covariance decomposition. bioRxiv. 2024 May 26.
Score: 0.212
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A flexible empirical Bayes approach to multivariate multiple regression, and its improved accuracy in predicting multi-tissue gene expression from genotypes. PLoS Genet. 2023 07; 19(7):e1010539.
Score: 0.199
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Fine-mapping from summary data with the "Sum of Single Effects" model. PLoS Genet. 2022 07; 18(7):e1010299.
Score: 0.186
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Flexible Signal Denoising via Flexible Empirical Bayes Shrinkage. J Mach Learn Res. 2021 Jan-Dec; 22.
Score: 0.167
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A simple new approach to variable selection in regression, with application to genetic fine mapping. J R Stat Soc Series B Stat Methodol. 2020 Dec; 82(5):1273-1300.
Score: 0.162
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Creating and sharing reproducible research code the workflowr way. F1000Res. 2019; 8:1749.
Score: 0.154
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Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions. Nat Genet. 2019 01; 51(1):187-195.
Score: 0.145
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Accurate genomic prediction of Coffea canephora in multiple environments using whole-genome statistical models. Heredity (Edinb). 2019 03; 122(3):261-275.
Score: 0.141
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Polygenic modeling with bayesian sparse linear mixed models. PLoS Genet. 2013; 9(2):e1003264.
Score: 0.097
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SuSiE 2.0: improved methods and implementations for genetic fine-mapping and phenotype prediction. bioRxiv. 2025 Dec 25.
Score: 0.059
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Genetic contributions to epigenetic-defined endotypes of allergic phenotypes in children. Am J Hum Genet. 2025 07 03; 112(7):1610-1624.
Score: 0.057
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Covariate-moderated Empirical Bayes Matrix Factorization. Adv Neural Inf Process Syst. 2025; 38:47219-47250.
Score: 0.055
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Genetic contributions to epigenetic-defined endotypes of allergic phenotypes in children. medRxiv. 2024 Oct 04.
Score: 0.054
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A pairwise cytokine code explains the organism-wide response to sepsis. Nat Immunol. 2024 Feb; 25(2):226-239.
Score: 0.052
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Fine-mapping studies distinguish genetic risks for childhood- and adult-onset asthma in the HLA region. Genome Med. 2022 05 24; 14(1):55.
Score: 0.046
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A Fast Algorithm for Maximum Likelihood Estimation of Mixture Proportions Using Sequential Quadratic Programming. J Comput Graph Stat. 2020; 29(2):261-273.
Score: 0.039