Co-Authors
This is a "connection" page, showing publications co-authored by Peter Carbonetto and Matthew Stephens.
Connection Strength
4.405
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GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership. Genome Biol. 2023 10 19; 24(1):236.
Score: 0.843
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Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's disease. PLoS Genet. 2013; 9(10):e1003770.
Score: 0.420
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fSuSiE enables fine-mapping of QTLs from genome-scale molecular profiles. bioRxiv. 2025 Aug 17.
Score: 0.239
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BAYESIAN VARIABLE SELECTION IN A COX PROPORTIONAL HAZARDS MODEL WITH THE "SUM OF SINGLE EFFECTS" PRIOR. ArXiv. 2025 Jun 06.
Score: 0.236
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Dissecting tumor transcriptional heterogeneity from single-cell RNA-seq data by generalized binary covariance decomposition. Nat Genet. 2025 Jan; 57(1):263-273.
Score: 0.229
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Accelerated dimensionality reduction of single-cell RNA sequencing data with fastglmpca. Bioinformatics. 2024 08 02; 40(8).
Score: 0.223
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Accelerated dimensionality reduction of single-cell RNA sequencing data with fastglmpca. bioRxiv. 2024 Jul 04.
Score: 0.221
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Fast and flexible joint fine-mapping of multiple traits via the Sum of Single Effects model. bioRxiv. 2024 Jun 18.
Score: 0.221
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Dissecting tumor transcriptional heterogeneity from single-cell RNA-seq data by generalized binary covariance decomposition. bioRxiv. 2024 May 26.
Score: 0.220
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A flexible empirical Bayes approach to multivariate multiple regression, and its improved accuracy in predicting multi-tissue gene expression from genotypes. PLoS Genet. 2023 07; 19(7):e1010539.
Score: 0.207
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Fine-mapping from summary data with the "Sum of Single Effects" model. PLoS Genet. 2022 07; 18(7):e1010299.
Score: 0.193
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Flexible Signal Denoising via Flexible Empirical Bayes Shrinkage. J Mach Learn Res. 2021 Jan-Dec; 22.
Score: 0.174
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A simple new approach to variable selection in regression, with application to genetic fine mapping. J R Stat Soc Series B Stat Methodol. 2020 Dec; 82(5):1273-1300.
Score: 0.168
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Creating and sharing reproducible research code the workflowr way. F1000Res. 2019; 8:1749.
Score: 0.160
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Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions. Nat Genet. 2019 01; 51(1):187-195.
Score: 0.150
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Accurate genomic prediction of Coffea canephora in multiple environments using whole-genome statistical models. Heredity (Edinb). 2019 03; 122(3):261-275.
Score: 0.146
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Polygenic modeling with bayesian sparse linear mixed models. PLoS Genet. 2013; 9(2):e1003264.
Score: 0.100
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Genetic contributions to epigenetic-defined endotypes of allergic phenotypes in children. Am J Hum Genet. 2025 Jul 03; 112(7):1610-1624.
Score: 0.059
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Genetic contributions to epigenetic-defined endotypes of allergic phenotypes in children. medRxiv. 2024 Oct 04.
Score: 0.056
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A pairwise cytokine code explains the organism-wide response to sepsis. Nat Immunol. 2024 Feb; 25(2):226-239.
Score: 0.053
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Fine-mapping studies distinguish genetic risks for childhood- and adult-onset asthma in the HLA region. Genome Med. 2022 05 24; 14(1):55.
Score: 0.048
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A Fast Algorithm for Maximum Likelihood Estimation of Mixture Proportions Using Sequential Quadratic Programming. J Comput Graph Stat. 2020; 29(2):261-273.
Score: 0.041