Joseph Thornton to Phylogeny
This is a "connection" page, showing publications Joseph Thornton has written about Phylogeny.
Connection Strength
3.794
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Vestigialization of an allosteric switch: genetic and structural mechanisms for the evolution of constitutive activity in a steroid hormone receptor. PLoS Genet. 2014 Jan; 10(1):e1004058.
Score: 0.326
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Robustness of ancestral sequence reconstruction to phylogenetic uncertainty. Mol Biol Evol. 2010 Sep; 27(9):1988-99.
Score: 0.251
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Long-branch attraction bias and inconsistency in Bayesian phylogenetics. PLoS One. 2009 Dec 09; 4(12):e7891.
Score: 0.246
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A mixed branch length model of heterotachy improves phylogenetic accuracy. Mol Biol Evol. 2008 Jun; 25(6):1054-66.
Score: 0.217
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Effects of branch length uncertainty on Bayesian posterior probabilities for phylogenetic hypotheses. Mol Biol Evol. 2007 Sep; 24(9):2108-18.
Score: 0.208
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Is there a star tree paradox? Mol Biol Evol. 2006 Oct; 23(10):1819-23.
Score: 0.194
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No magic pill for phylogenetic error. Trends Genet. 2005 Jun; 21(6):310-1.
Score: 0.180
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Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous. Nature. 2004 Oct 21; 431(7011):980-4.
Score: 0.172
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Resurrecting the ancestral steroid receptor: ancient origin of estrogen signaling. Science. 2003 Sep 19; 301(5640):1714-7.
Score: 0.160
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Epistatic drift causes gradual decay of predictability in protein evolution. Science. 2022 05 20; 376(6595):823-830.
Score: 0.145
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Comment on "Ancient origins of allosteric activation in a Ser-Thr kinase". Science. 2020 11 20; 370(6519).
Score: 0.131
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A new method to localize and test the significance of incongruence: detecting domain shuffling in the nuclear receptor superfamily. Syst Biol. 2000 Jun; 49(2):183-201.
Score: 0.127
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Ancient mechanisms for the evolution of the bicoid homeodomain's function in fly development. Elife. 2018 10 09; 7.
Score: 0.113
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Multinucleotide mutations cause false inferences of lineage-specific positive selection. Nat Ecol Evol. 2018 08; 2(8):1280-1288.
Score: 0.111
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Robustness of Reconstructed Ancestral Protein Functions to Statistical Uncertainty. Mol Biol Evol. 2017 02 01; 34(2):247-261.
Score: 0.101
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Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module. Cell. 2014 Sep 25; 159(1):58-68.
Score: 0.086
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Biophysical mechanisms for large-effect mutations in the evolution of steroid hormone receptors. Proc Natl Acad Sci U S A. 2013 Jul 09; 110(28):11475-80.
Score: 0.078
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Evolution of minimal specificity and promiscuity in steroid hormone receptors. PLoS Genet. 2012; 8(11):e1003072.
Score: 0.075
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Evolution of increased complexity in a molecular machine. Nature. 2012 Jan 09; 481(7381):360-4.
Score: 0.071
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Mechanisms for the evolution of a derived function in the ancestral glucocorticoid receptor. PLoS Genet. 2011 Jun; 7(6):e1002117.
Score: 0.068
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Lamprey endocrinology is not ancestral. Proc Natl Acad Sci U S A. 2011 Jan 11; 108(2):E5; author reply E6.
Score: 0.066
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Protein evolution by molecular tinkering: diversification of the nuclear receptor superfamily from a ligand-dependent ancestor. PLoS Biol. 2010 Oct 05; 8(10).
Score: 0.065
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Evolution of steroid receptors from an estrogen-sensitive ancestral receptor. Mol Cell Endocrinol. 2011 Mar 01; 334(1-2):31-8.
Score: 0.065
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Hormone-activated estrogen receptors in annelid invertebrates: implications for evolution and endocrine disruption. Endocrinology. 2009 Apr; 150(4):1731-8.
Score: 0.057
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Mechanistic approaches to the study of evolution: the functional synthesis. Nat Rev Genet. 2007 Sep; 8(9):675-88.
Score: 0.052
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Crystal structure of an ancient protein: evolution by conformational epistasis. Science. 2007 Sep 14; 317(5844):1544-8.
Score: 0.052
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The Octopus vulgaris estrogen receptor is a constitutive transcriptional activator: evolutionary and functional implications. Endocrinology. 2006 Aug; 147(8):3861-9.
Score: 0.048
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Evolution of hormone-receptor complexity by molecular exploitation. Science. 2006 Apr 07; 312(5770):97-101.
Score: 0.048
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Resurrecting ancient genes: experimental analysis of extinct molecules. Nat Rev Genet. 2004 May; 5(5):366-75.
Score: 0.042
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An automated phylogenetic key for classifying homeoboxes. Mol Phylogenet Evol. 2002 Sep; 24(3):388-99.
Score: 0.037
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Molecular and structural basis of olfactory sensory neuron axon coalescence by Kirrel receptors. Cell Rep. 2021 11 02; 37(5):109940.
Score: 0.035
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Contingency and chance erase necessity in the experimental evolution of ancestral proteins. Elife. 2021 06 01; 10.
Score: 0.034
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Evolution of vertebrate steroid receptors from an ancestral estrogen receptor by ligand exploitation and serial genome expansions. Proc Natl Acad Sci U S A. 2001 May 08; 98(10):5671-6.
Score: 0.034
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Gene family evolution and homology: genomics meets phylogenetics. Annu Rev Genomics Hum Genet. 2000; 1:41-73.
Score: 0.031
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A second estrogen receptor from Japanese lamprey (Lethenteron japonicum) does not have activities for estrogen binding and transcription. Gen Comp Endocrinol. 2016 09 15; 236:105-114.
Score: 0.024
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Evolution of a new function by degenerative mutation in cephalochordate steroid receptors. PLoS Genet. 2008 Sep 12; 4(9):e1000191.
Score: 0.014
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Structural analyses reveal phosphatidyl inositols as ligands for the NR5 orphan receptors SF-1 and LRH-1. Cell. 2005 Feb 11; 120(3):343-55.
Score: 0.011
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Estrogen receptors in Xenopus: duplicate genes, splice variants, and tissue-specific expression. Gen Comp Endocrinol. 2003 Aug; 133(1):38-49.
Score: 0.010
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Identification of a third distinct estrogen receptor and reclassification of estrogen receptors in teleosts. Proc Natl Acad Sci U S A. 2000 Sep 26; 97(20):10751-6.
Score: 0.008