Manyuan Long to Animals
This is a "connection" page, showing publications Manyuan Long has written about Animals.
Connection Strength
1.627
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Analysis of the impact of gene evolution on reproductive effects reveals prevalent sexual and germline-soma conflicts. Nat Ecol Evol. 2026 Jun; 10(6):1155-1167.
Score: 0.059
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Subcellular Enrichment Patterns of New Genes in Drosophila Evolution. Mol Biol Evol. 2025 02 03; 42(2).
Score: 0.054
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Functional innovation through new genes as a general evolutionary process. Nat Genet. 2025 02; 57(2):295-309.
Score: 0.054
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The three-dimensional genome drives the evolution of asymmetric gene duplicates via enhancer capture-divergence. Sci Adv. 2024 12 20; 10(51):eadn6625.
Score: 0.054
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Sexual conflict drive in the rapid evolution of new gametogenesis genes. Semin Cell Dev Biol. 2024 Jun-Jul; 159-160:27-37.
Score: 0.051
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Rapid Cis-Trans Coevolution Driven by a Novel Gene Retroposed from a Eukaryotic Conserved CCR4-NOT Component in Drosophila. Genes (Basel). 2021 12 26; 13(1).
Score: 0.044
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A zebrafish-specific chimeric gene evolved essential developmental functions: discussion of conceptual significance. Sci China Life Sci. 2021 May; 64(5):840-842.
Score: 0.041
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Rapid Evolution of Gained Essential Developmental Functions of a Young Gene via Interactions with Other Essential Genes. Mol Biol Evol. 2019 10 01; 36(10):2212-2226.
Score: 0.038
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Gene duplicates resolving sexual conflict rapidly evolved essential gametogenesis functions. Nat Ecol Evol. 2018 04; 2(4):705-712.
Score: 0.034
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Meiotic Sex Chromosome Inactivation: Compensation by Gene Traffic. Curr Biol. 2017 07 10; 27(13):R659-R661.
Score: 0.032
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New genes drive the evolution of gene interaction networks in the human and mouse genomes. Genome Biol. 2015 Oct 01; 16:202.
Score: 0.028
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New genes contribute to genetic and phenotypic novelties in human evolution. Curr Opin Genet Dev. 2014 Dec; 29:90-6.
Score: 0.027
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New genes important for development. EMBO Rep. 2014 May; 15(5):460-1.
Score: 0.026
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Evolution of gene structural complexity: an alternative-splicing-based model accounts for intron-containing retrogenes. Plant Physiol. 2014 May; 165(1):412-23.
Score: 0.025
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New gene evolution: little did we know. Annu Rev Genet. 2013; 47:307-33.
Score: 0.025
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New genes as drivers of phenotypic evolution. Nat Rev Genet. 2013 Sep; 14(9):645-60.
Score: 0.025
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Why rodent pseudogenes refuse to retire. Genome Biol. 2012 Nov 20; 13(11):178.
Score: 0.023
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New genes expressed in human brains: implications for annotating evolving genomes. Bioessays. 2012 Nov; 34(11):982-91.
Score: 0.023
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Segmental dataset and whole body expression data do not support the hypothesis that non-random movement is an intrinsic property of Drosophila retrogenes. BMC Evol Biol. 2012 Sep 05; 12:169.
Score: 0.023
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Re-analysis of the larval testis data on meiotic sex chromosome inactivation revealed evidence for tissue-specific gene expression related to the drosophila X chromosome. BMC Biol. 2012 Jun 12; 10:49; author reply 50.
Score: 0.023
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Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. EMBO J. 2012 Jun 13; 31(12):2798-809.
Score: 0.022
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Frequent recent origination of brain genes shaped the evolution of foraging behavior in Drosophila. Cell Rep. 2012 Feb 23; 1(2):118-32.
Score: 0.022
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The origin and evolution of new genes. Methods Mol Biol. 2012; 856:161-86.
Score: 0.022
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Drosophila duplication hotspots are associated with late-replicating regions of the genome. PLoS Genet. 2011 Nov; 7(11):e1002340.
Score: 0.022
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Accelerated recruitment of new brain development genes into the human genome. PLoS Biol. 2011 Oct; 9(10):e1001179.
Score: 0.022
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Roles of young serine-endopeptidase genes in survival and reproduction revealed rapid evolution of phenotypic effects at adult stages. Fly (Austin). 2011 Oct-Dec; 5(4):345-51.
Score: 0.022
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Deficiency of X-linked inverted duplicates with male-biased expression and the underlying evolutionary mechanisms in the Drosophila genome. Mol Biol Evol. 2011 Oct; 28(10):2823-32.
Score: 0.021
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A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. Bioinformatics. 2011 Jul 01; 27(13):1749-53.
Score: 0.021
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Highly tissue specific expression of Sphinx supports its male courtship related role in Drosophila melanogaster. PLoS One. 2011 Apr 26; 6(4):e18853.
Score: 0.021
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New genes in Drosophila quickly become essential. Science. 2010 Dec 17; 330(6011):1682-5.
Score: 0.020
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Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome. PLoS Biol. 2010 Oct 05; 8(10).
Score: 0.020
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Age-dependent chromosomal distribution of male-biased genes in Drosophila. Genome Res. 2010 Nov; 20(11):1526-33.
Score: 0.020
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Mutational bias shaping fly copy number variation: implications for genome evolution. Trends Genet. 2010 Jun; 26(6):243-7.
Score: 0.020
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Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome. Mol Biol Evol. 2010 Apr; 27(4):848-61.
Score: 0.019
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Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes. PLoS Genet. 2009 Nov; 5(11):e1000731.
Score: 0.019
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Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster. Nucleic Acids Res. 2009 Jul; 37(13):4308-14.
Score: 0.018
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General gene movement off the X chromosome in the Drosophila genus. Genome Res. 2009 May; 19(5):897-903.
Score: 0.018
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RNA-based gene duplication: mechanistic and evolutionary insights. Nat Rev Genet. 2009 Jan; 10(1):19-31.
Score: 0.018
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Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster. Science. 2008 Jun 20; 320(5883):1629-31.
Score: 0.017
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The evolution of courtship behaviors through the origination of a new gene in Drosophila. Proc Natl Acad Sci U S A. 2008 May 27; 105(21):7478-83.
Score: 0.017
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Recurrent tandem gene duplication gave rise to functionally divergent genes in Drosophila. Mol Biol Evol. 2008 Jul; 25(7):1451-8.
Score: 0.017
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Origins of new male germ-line functions from X-derived autosomal retrogenes in the mouse. Mol Biol Evol. 2007 Oct; 24(10):2242-53.
Score: 0.016
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Origination of chimeric genes through DNA-level recombination. Genome Dyn. 2007; 3:131-146.
Score: 0.016
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A new retroposed gene in Drosophila heterochromatin detected by microarray-based comparative genomic hybridization. J Mol Evol. 2007 Feb; 64(2):272-83.
Score: 0.016
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Retrogene movement within- and between-chromosomes in the evolution of Drosophila genomes. Gene. 2006 Dec 30; 385:96-102.
Score: 0.015
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Origination of an X-linked testes chimeric gene by illegitimate recombination in Drosophila. PLoS Genet. 2006 May; 2(5):e77.
Score: 0.015
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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature. 2004 Dec 09; 432(7018):695-716.
Score: 0.013
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Excess of amino acid substitutions relative to polymorphism between X-linked duplications in Drosophila melanogaster. Mol Biol Evol. 2005 Feb; 22(2):273-84.
Score: 0.013
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Duplication-degeneration as a mechanism of gene fission and the origin of new genes in Drosophila species. Nat Genet. 2004 May; 36(5):523-7.
Score: 0.013
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Nucleotide variation and recombination along the fourth chromosome in Drosophila simulans. Genetics. 2004 Apr; 166(4):1783-94.
Score: 0.013
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High-Quality Genome Assemblies Reveal Evolutionary Dynamics of Repetitive DNA and Structural Rearrangements in the Drosophila virilis Subgroup. Genome Biol Evol. 2024 01 05; 16(1).
Score: 0.013
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The origin of new genes: glimpses from the young and old. Nat Rev Genet. 2003 Nov; 4(11):865-75.
Score: 0.012
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Dntf-2r, a young Drosophila retroposed gene with specific male expression under positive Darwinian selection. Genetics. 2003 Jul; 164(3):977-88.
Score: 0.012
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Rapid divergence of gene duplicates on the Drosophila melanogaster X chromosome. Mol Biol Evol. 2002 Jun; 19(6):918-25.
Score: 0.011
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Retrogene Duplication and Expression Patterns Shaped by the Evolution of Sex Chromosomes in Malaria Mosquitoes. Genes (Basel). 2022 05 28; 13(6).
Score: 0.011
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Expansion of genome coding regions by acquisition of new genes. Genetica. 2002 May; 115(1):65-80.
Score: 0.011
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Rapid Gene Evolution in an Ancient Post-transcriptional and Translational Regulatory System Compensates for Meiotic X Chromosomal Inactivation. Mol Biol Evol. 2022 01 07; 39(1).
Score: 0.011
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Nucleotide variation along the Drosophila melanogaster fourth chromosome. Science. 2002 Jan 04; 295(5552):134-7.
Score: 0.011
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Evolution of novel genes. Curr Opin Genet Dev. 2001 Dec; 11(6):673-80.
Score: 0.011
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Gene duplication and evolution. Science. 2001 Aug 31; 293(5535):1551.
Score: 0.011
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Genomic analyses of new genes and their phenotypic effects reveal rapid evolution of essential functions in Drosophila development. PLoS Genet. 2021 07; 17(7):e1009654.
Score: 0.011
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Testing the "proto-splice sites" model of intron origin: evidence from analysis of intron phase correlations. Mol Biol Evol. 2000 Dec; 17(12):1789-96.
Score: 0.010
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A new function evolved from gene fusion. Genome Res. 2000 Nov; 10(11):1655-7.
Score: 0.010
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The origin of the Jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster. Mol Biol Evol. 2000 Sep; 17(9):1294-301.
Score: 0.010
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Evolutionary Dynamics of Abundant 7-bp Satellites in the Genome of Drosophila virilis. Mol Biol Evol. 2020 05 01; 37(5):1362-1375.
Score: 0.010
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Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila. Gene. 1999 Sep 30; 238(1):135-41.
Score: 0.009
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Intron-exon structures of eukaryotic model organisms. Nucleic Acids Res. 1999 Aug 01; 27(15):3219-28.
Score: 0.009
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Origination and evolution of orphan genes and de novo genes in the genome of Caenorhabditis elegans. Sci China Life Sci. 2019 Apr; 62(4):579-593.
Score: 0.009
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GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes. Genome Res. 2019 04; 29(4):682-696.
Score: 0.009
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Relationship between "proto-splice sites" and intron phases: evidence from dicodon analysis. Proc Natl Acad Sci U S A. 1998 Jan 06; 95(1):219-23.
Score: 0.008
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Origin of genes. Proc Natl Acad Sci U S A. 1997 Jul 22; 94(15):7698-703.
Score: 0.008
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Genetic Architecture of Natural Variation Underlying Adult Foraging Behavior That Is Essential for Survival of Drosophila melanogaster. Genome Biol Evol. 2017 05 01; 9(5):1357-1369.
Score: 0.008
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LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans. Genome Res. 2016 12; 26(12):1663-1675.
Score: 0.008
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Exon shuffling and the origin of the mitochondrial targeting function in plant cytochrome c1 precursor. Proc Natl Acad Sci U S A. 1996 Jul 23; 93(15):7727-31.
Score: 0.008
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Intron phase correlations and the evolution of the intron/exon structure of genes. Proc Natl Acad Sci U S A. 1995 Dec 19; 92(26):12495-9.
Score: 0.007
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Evolution of the intron-exon structure of eukaryotic genes. Curr Opin Genet Dev. 1995 Dec; 5(6):774-8.
Score: 0.007
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A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster. Genome Res. 2014 04; 24(4):629-38.
Score: 0.006
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Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. Science. 1993 Apr 02; 260(5104):91-5.
Score: 0.006
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gKaKs: the pipeline for genome-level Ka/Ks calculation. Bioinformatics. 2013 Mar 01; 29(5):645-6.
Score: 0.006
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Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome. PLoS Biol. 2012; 10(11):e1001420.
Score: 0.006
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Retrogenes moved out of the z chromosome in the silkworm. J Mol Evol. 2012 Apr; 74(3-4):113-26.
Score: 0.006
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Evolutionary patterns of RNA-based duplication in non-mammalian chordates. PLoS One. 2011; 6(7):e21466.
Score: 0.005
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Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method. Proc Natl Acad Sci U S A. 2011 May 10; 108(19):7860-5.
Score: 0.005
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Codon usage divergence of homologous vertebrate genes and codon usage clock. J Mol Evol. 1991 Jan; 32(1):6-15.
Score: 0.005
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The rapid generation of chimerical genes expanding protein diversity in zebrafish. BMC Genomics. 2010 Nov 24; 11:657.
Score: 0.005
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Evolution of enzymatic activities of testis-specific short-chain dehydrogenase/reductase in Drosophila. J Mol Evol. 2010 Oct; 71(4):241-9.
Score: 0.005
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Direct evidence for postmeiotic transcription during Drosophila melanogaster spermatogenesis. Genetics. 2010 Sep; 186(1):431-3.
Score: 0.005
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Tight junction-associated MARVEL proteins marveld3, tricellulin, and occludin have distinct but overlapping functions. Mol Biol Cell. 2010 Apr 01; 21(7):1200-13.
Score: 0.005
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Positive selection for the male functionality of a co-retroposed gene in the hominoids. BMC Evol Biol. 2009 Oct 15; 9:252.
Score: 0.005
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Adaptive evolution of the insulin two-gene system in mouse. Genetics. 2008 Mar; 178(3):1683-91.
Score: 0.004
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Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet. 2008 Jan; 4(1):e3.
Score: 0.004
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Evolution of genes and genomes on the Drosophila phylogeny. Nature. 2007 Nov 08; 450(7167):203-18.
Score: 0.004
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Translational effects of differential codon usage among intragenic domains of new genes in Drosophila. Biochim Biophys Acta. 2005 May 01; 1728(3):135-42.
Score: 0.003
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Evolving protein functional diversity in new genes of Drosophila. Proc Natl Acad Sci U S A. 2004 Nov 16; 101(46):16246-50.
Score: 0.003
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Sex chromosomes and male functions: where do new genes go? Cell Cycle. 2004 Jul; 3(7):873-5.
Score: 0.003
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Extensive gene traffic on the mammalian X chromosome. Science. 2004 Jan 23; 303(5657):537-40.
Score: 0.003
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Retroposed new genes out of the X in Drosophila. Genome Res. 2002 Dec; 12(12):1854-9.
Score: 0.003
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Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection. Proc Natl Acad Sci U S A. 2002 Jun 11; 99(12):8121-6.
Score: 0.003
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Evolution of the phosphoglycerate mutase processed gene in human and chimpanzee revealing the origin of a new primate gene. Mol Biol Evol. 2002 May; 19(5):654-63.
Score: 0.003
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Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster. Proc Natl Acad Sci U S A. 2002 Apr 02; 99(7):4448-53.
Score: 0.003
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Generation of a widespread Drosophila inversion by a transposable element. Science. 1999 Jul 16; 285(5426):415-8.
Score: 0.002
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Toward a resolution of the introns early/late debate: only phase zero introns are correlated with the structure of ancient proteins. Proc Natl Acad Sci U S A. 1998 Apr 28; 95(9):5094-9.
Score: 0.002
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Introns and gene evolution. Genes Cells. 1996 Jun; 1(6):493-505.
Score: 0.002