Yoav Gilad to Humans
This is a "connection" page, showing publications Yoav Gilad has written about Humans.
Connection Strength
1.091
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The Baboon as a Model to Study Human Health and Complex Disease. Am J Primatol. 2026 Sep; 88(9):e70207.
Score: 0.031
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Beyond the baseline: mapping the context-specific regulatory landscape of disease. Trends Genet. 2026 04; 42(4):324-338.
Score: 0.030
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Oxygen-induced stress reveals context-specific gene regulatory effects in human brain organoids. Genome Res. 2025 08 01; 35(8):1689-1700.
Score: 0.029
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Cell type and dynamic state govern genetic regulation of gene expression in heterogeneous differentiating cultures. Cell Genom. 2024 12 11; 4(12):100701.
Score: 0.028
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Induced Pluripotent Stem Cells in Disease Biology and the Evidence for Their In Vitro Utility. Annu Rev Genet. 2023 11 27; 57:341-360.
Score: 0.025
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The relationship between regulatory changes in cis and trans and the evolution of gene expression in humans and chimpanzees. Genome Biol. 2023 09 11; 24(1):207.
Score: 0.025
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Human embryoid bodies as a novel system for genomic studies of functionally diverse cell types. Elife. 2022 02 10; 11.
Score: 0.023
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Divergence in alternative polyadenylation contributes to gene regulatory differences between humans and chimpanzees. Elife. 2021 02 17; 10.
Score: 0.021
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Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes. Elife. 2021 02 08; 10.
Score: 0.021
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A TAD Skeptic: Is 3D Genome Topology Conserved? Trends Genet. 2021 03; 37(3):216-223.
Score: 0.021
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Gene expression variability in human and chimpanzee populations share common determinants. Elife. 2020 10 21; 9.
Score: 0.021
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Where Are the Disease-Associated eQTLs? Trends Genet. 2021 02; 37(2):109-124.
Score: 0.021
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Effective study design for comparative functional genomics. Nat Rev Genet. 2020 07; 21(7):385-386.
Score: 0.020
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Prime time for primate functional genomics. Curr Opin Genet Dev. 2020 06; 62:1-7.
Score: 0.020
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Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis. Genome Res. 2020 04; 30(4):611-621.
Score: 0.020
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A comparison of gene expression and DNA methylation patterns across tissues and species. Genome Res. 2020 02; 30(2):250-262.
Score: 0.020
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Reorganization of 3D genome structure may contribute to gene regulatory evolution in primates. PLoS Genet. 2019 07; 15(7):e1008278.
Score: 0.019
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Dynamic genetic regulation of gene expression during cellular differentiation. Science. 2019 06 28; 364(6447):1287-1290.
Score: 0.019
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Discovery and characterization of variance QTLs in human induced pluripotent stem cells. PLoS Genet. 2019 04; 15(4):e1008045.
Score: 0.019
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A generally conserved response to hypoxia in iPSC-derived cardiomyocytes from humans and chimpanzees. Elife. 2019 04 08; 8.
Score: 0.019
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A Comparative Assessment of Human and Chimpanzee iPSC-derived Cardiomyocytes with Primary Heart Tissues. Sci Rep. 2018 10 17; 8(1):15312.
Score: 0.018
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A Methodological Assessment and Characterization of Genetically-Driven Variation in Three Human Phosphoproteomes. Sci Rep. 2018 08 14; 8(1):12106.
Score: 0.018
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Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes. Elife. 2018 05 08; 7.
Score: 0.017
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Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs. Elife. 2018 04 12; 7.
Score: 0.017
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Impact of regulatory variation across human iPSCs and differentiated cells. Genome Res. 2018 01; 28(1):122-131.
Score: 0.017
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Human genomics: Cracking the regulatory code. Nature. 2017 10 11; 550(7675):190-191.
Score: 0.017
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Batch effects and the effective design of single-cell gene expression studies. Sci Rep. 2017 01 03; 7:39921.
Score: 0.016
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Genetic Variation, Not Cell Type of Origin, Underlies the Majority of Identifiable Regulatory Differences in iPSCs. PLoS Genet. 2016 Jan; 12(1):e1005793.
Score: 0.015
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Synthesis, biological studies and molecular dynamics of new anticancer RGD-based peptide conjugates for targeted drug delivery. Bioorg Med Chem. 2016 Jan 15; 24(2):294-303.
Score: 0.015
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Genome-Wide Association Studies of the Human Gut Microbiota. PLoS One. 2015; 10(11):e0140301.
Score: 0.015
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Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature. PLoS Genet. 2015 May; 11(5):e1005216.
Score: 0.014
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The genetic and mechanistic basis for variation in gene regulation. PLoS Genet. 2015 Jan; 11(1):e1004857.
Score: 0.014
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Genomic variation. Impact of regulatory variation from RNA to protein. Science. 2015 Feb 06; 347(6222):664-7.
Score: 0.014
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Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels. PLoS Genet. 2014 Sep; 10(9):e1004663.
Score: 0.014
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Comparative studies of gene regulatory mechanisms. Curr Opin Genet Dev. 2014 Dec; 29:68-74.
Score: 0.014
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Comparative metabolomics in primates reveals the effects of diet and gene regulatory variation on metabolic divergence. Sci Rep. 2014 Jul 28; 4:5809.
Score: 0.013
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RNA-seq: impact of RNA degradation on transcript quantification. BMC Biol. 2014 May 30; 12:42.
Score: 0.013
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Seasonal variation in human gut microbiome composition. PLoS One. 2014; 9(3):e90731.
Score: 0.013
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The functional consequences of variation in transcription factor binding. PLoS Genet. 2014 Mar; 10(3):e1004226.
Score: 0.013
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Does a unique olfactory genome imply a unique olfactory world? Nat Neurosci. 2014 Jan; 17(1):6-8.
Score: 0.013
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Epigenetic modifications are associated with inter-species gene expression variation in primates. Genome Biol. 2014; 15(12):547.
Score: 0.013
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Primate transcript and protein expression levels evolve under compensatory selection pressures. Science. 2013 Nov 29; 342(6162):1100-4.
Score: 0.013
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Social environmental effects on gene regulation. Cell Mol Life Sci. 2013 Nov; 70(22):4323-39.
Score: 0.012
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The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels. PLoS Genet. 2012; 8(10):e1003000.
Score: 0.012
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The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes. Hum Mol Genet. 2012 May 01; 21(9):2111-23.
Score: 0.011
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Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection. Proc Natl Acad Sci U S A. 2012 Jan 24; 109(4):1204-9.
Score: 0.011
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Using genomic tools to study regulatory evolution. Methods Mol Biol. 2012; 856:335-61.
Score: 0.011
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A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues. PLoS Genet. 2011 Feb; 7(2):e1001316.
Score: 0.011
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Gene expression differences among primates are associated with changes in a histone epigenetic modification. Genetics. 2011 Apr; 187(4):1225-34.
Score: 0.011
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The effects of EBV transformation on gene expression levels and methylation profiles. Hum Mol Genet. 2011 Apr 15; 20(8):1643-52.
Score: 0.011
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Functional comparison of innate immune signaling pathways in primates. PLoS Genet. 2010 Dec 16; 6(12):e1001249.
Score: 0.010
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Sex-specific and lineage-specific alternative splicing in primates. Genome Res. 2010 Feb; 20(2):180-9.
Score: 0.010
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Characterizing natural variation using next-generation sequencing technologies. Trends Genet. 2009 Oct; 25(10):463-71.
Score: 0.010
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Expression quantitative trait loci detected in cell lines are often present in primary tissues. Hum Mol Genet. 2009 Nov 15; 18(22):4296-303.
Score: 0.010
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Sex-specific genetic architecture of human disease. Nat Rev Genet. 2008 Dec; 9(12):911-22.
Score: 0.009
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Gene regulation in primates evolves under tissue-specific selection pressures. PLoS Genet. 2008 Nov; 4(11):e1000271.
Score: 0.009
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Revealing the architecture of gene regulation: the promise of eQTL studies. Trends Genet. 2008 Aug; 24(8):408-15.
Score: 0.009
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Generation of an induced pluripotent stem cell line CGOi001-A from a patient with hereditary thrombocytopenia and a germline ANKRD26 mutation. Stem Cell Res. 2026 Mar; 91:103919.
Score: 0.007
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Single-cell sequencing reveals lineage-specific dynamic genetic regulation of gene expression during human cardiomyocyte differentiation. PLoS Genet. 2022 01; 18(1):e1009666.
Score: 0.006
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Benchmarking sequencing methods and tools that facilitate the study of alternative polyadenylation. Genome Biol. 2021 10 14; 22(1):291.
Score: 0.006
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Functional dynamic genetic effects on gene regulation are specific to particular cell types and environmental conditions. Elife. 2021 05 14; 10.
Score: 0.005
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Alternative polyadenylation mediates genetic regulation of gene expression. Elife. 2020 06 25; 9.
Score: 0.005
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Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation. Sci Rep. 2020 01 30; 10(1):1535.
Score: 0.005
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A comparative study of endoderm differentiation in humans and chimpanzees. Genome Biol. 2018 10 15; 19(1):162.
Score: 0.005
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Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells. Sci Rep. 2017 07 18; 7(1):5702.
Score: 0.004
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Reducing mitochondrial reads in ATAC-seq using CRISPR/Cas9. Sci Rep. 2017 05 26; 7(1):2451.
Score: 0.004
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Host genetic variation in mucosal immunity pathways influences the upper airway microbiome. Microbiome. 2017 02 01; 5(1):16.
Score: 0.004
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Gene expression in local stroma reflects breast tumor states and predicts patient outcome. Sci Rep. 2016 12 16; 6:39240.
Score: 0.004
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DNA methylation in lung cells is associated with asthma endotypes and genetic risk. JCI Insight. 2016 12 08; 1(20):e90151.
Score: 0.004
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The human olfactory transcriptome. BMC Genomics. 2016 08 11; 17(1):619.
Score: 0.004
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Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling. Elife. 2016 05 27; 5.
Score: 0.004
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RNA splicing is a primary link between genetic variation and disease. Science. 2016 Apr 29; 352(6285):600-4.
Score: 0.004
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Integrated analyses of gene expression and genetic association studies in a founder population. Hum Mol Genet. 2016 05 15; 25(10):2104-2112.
Score: 0.004
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Mycobacterial infection induces a specific human innate immune response. Sci Rep. 2015 Nov 20; 5:16882.
Score: 0.004
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msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding. PLoS One. 2015; 10(9):e0138030.
Score: 0.004
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Bacterial infection remodels the DNA methylation landscape of human dendritic cells. Genome Res. 2015 Dec; 25(12):1801-11.
Score: 0.004
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WASP: allele-specific software for robust molecular quantitative trait locus discovery. Nat Methods. 2015 Nov; 12(11):1061-3.
Score: 0.004
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Metastasis Suppressors Regulate the Tumor Microenvironment by Blocking Recruitment of Prometastatic Tumor-Associated Macrophages. Cancer Res. 2015 Oct 01; 75(19):4063-73.
Score: 0.004
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A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics. Elife. 2015 Jun 23; 4:e07103.
Score: 0.004
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Host genetic variation influences gene expression response to rhinovirus infection. PLoS Genet. 2015 Apr; 11(4):e1005111.
Score: 0.004
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The effect of freeze-thaw cycles on gene expression levels in lymphoblastoid cell lines. PLoS One. 2014; 9(9):e107166.
Score: 0.003
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Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes. Genome Biol. 2013 Dec 31; 14(12):R148.
Score: 0.003
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Identification of genetic variants that affect histone modifications in human cells. Science. 2013 Nov 08; 342(6159):747-9.
Score: 0.003
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Controls of nucleosome positioning in the human genome. PLoS Genet. 2012; 8(11):e1003036.
Score: 0.003
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General olfactory sensitivity database (GOSdb): candidate genes and their genomic variations. Hum Mutat. 2013 Jan; 34(1):32-41.
Score: 0.003
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Genomics: ENCODE explained. Nature. 2012 Sep 06; 489(7414):52-5.
Score: 0.003
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Regulatory element copy number differences shape primate expression profiles. Proc Natl Acad Sci U S A. 2012 Jul 31; 109(31):12656-61.
Score: 0.003
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Comment on "Widespread RNA and DNA sequence differences in the human transcriptome". Science. 2012 Mar 16; 335(6074):1302; author reply 1302.
Score: 0.003
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Time-dependent transcriptional profiling links gene expression to mitogen-activated protein kinase kinase 4 (MKK4)-mediated suppression of omental metastatic colonization. Clin Exp Metastasis. 2012 Jun; 29(5):397-408.
Score: 0.003
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Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data. PLoS One. 2012; 7(2):e30629.
Score: 0.003
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DNase?I sensitivity QTLs are a major determinant of human expression variation. Nature. 2012 Feb 05; 482(7385):390-4.
Score: 0.003
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Dissecting the regulatory architecture of gene expression QTLs. Genome Biol. 2012 Jan 31; 13(1):R7.
Score: 0.003
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Comparative RNA sequencing reveals substantial genetic variation in endangered primates. Genome Res. 2012 Apr; 22(4):602-10.
Score: 0.003
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A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar. Genome Biol Evol. 2012; 4(2):126-35.
Score: 0.003
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False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions. Bioinformatics. 2011 Aug 01; 27(15):2144-6.
Score: 0.003
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DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines. Genome Biol. 2011; 12(1):R10.
Score: 0.003
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Noisy splicing drives mRNA isoform diversity in human cells. PLoS Genet. 2010 Dec 09; 6(12):e1001236.
Score: 0.003
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Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data. Genome Res. 2011 Mar; 21(3):447-55.
Score: 0.003
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Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature. 2010 Apr 01; 464(7289):768-72.
Score: 0.002
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Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data. Bioinformatics. 2009 Dec 15; 25(24):3207-12.
Score: 0.002
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High-resolution mapping of expression-QTLs yields insight into human gene regulation. PLoS Genet. 2008 Oct; 4(10):e1000214.
Score: 0.002