John Reinitz to Animals
This is a "connection" page, showing publications John Reinitz has written about Animals.
Connection Strength
0.789
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A sequence level model of an intact locus predicts the location and function of nonadditive enhancers. PLoS One. 2017; 12(7):e0180861.
Score: 0.039
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DNA Occupancy of Polymerizing Transcription Factors: A Chemical Model of the ETS Family Factor Yan. Biophys J. 2017 Jan 10; 112(1):180-192.
Score: 0.038
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Natural variation of the expression pattern of the segmentation gene even-skipped in melanogaster. Dev Biol. 2015 Sep 01; 405(1):173-81.
Score: 0.034
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Punctuated evolution and robustness in morphogenesis. Biosystems. 2014 Sep; 123:106-13.
Score: 0.032
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Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Mol Biol Evol. 2014 Apr; 31(4):903-16.
Score: 0.031
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A synthetic biology approach to the development of transcriptional regulatory models and custom enhancer design. Methods. 2013 Jul 15; 62(1):91-8.
Score: 0.029
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Rearrangements of 2.5 kilobases of noncoding DNA from the Drosophila even-skipped locus define predictive rules of genomic cis-regulatory logic. PLoS Genet. 2013; 9(2):e1003243.
Score: 0.029
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Drosophila blastoderm patterning. Curr Opin Genet Dev. 2012 Dec; 22(6):533-41.
Score: 0.029
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Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors. PLoS Comput Biol. 2009 Mar; 5(3):e1000303.
Score: 0.022
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Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation. PLoS Biol. 2009 Mar; 7(3):e1000049.
Score: 0.022
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Estimation of errors introduced by confocal imaging into the data on segmentation gene expression in Drosophila. Bioinformatics. 2009 Feb 01; 25(3):346-52.
Score: 0.021
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FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution. Nucleic Acids Res. 2009 Jan; 37(Database issue):D560-6.
Score: 0.021
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[A model with asymptotically stable dynamics for the network of Drosophila gap genes]. Biofizika. 2008 Mar-Apr; 53(2):235-49.
Score: 0.020
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Master equation simulation analysis of immunostained Bicoid morphogen gradient. BMC Syst Biol. 2007 Nov 16; 1:52.
Score: 0.020
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Characterization of the Drosophila segment determination morphome. Dev Biol. 2008 Jan 15; 313(2):844-62.
Score: 0.020
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Developmental biology: a ten per cent solution. Nature. 2007 Jul 26; 448(7152):420-1.
Score: 0.020
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On the dynamic nature of positional information. Bioessays. 2006 Nov; 28(11):1102-11.
Score: 0.019
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Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene. Nat Genet. 2006 Oct; 38(10):1159-65.
Score: 0.018
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A high-throughput method for quantifying gene expression data from early Drosophila embryos. Dev Genes Evol. 2005 Jul; 215(7):374-81.
Score: 0.017
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Removal of background signal from in situ data on the expression of segmentation genes in Drosophila. Dev Genes Evol. 2005 Jun; 215(6):320-6.
Score: 0.017
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Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster. Genetics. 2004 Aug; 167(4):1721-37.
Score: 0.016
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Dynamic control of positional information in the early Drosophila embryo. Nature. 2004 Jul 15; 430(6997):368-71.
Score: 0.016
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A database for management of gene expression data in situ. Bioinformatics. 2004 Sep 22; 20(14):2212-21.
Score: 0.016
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Global repression by tailless during segmentation. Dev Biol. 2024 Jan; 505:11-23.
Score: 0.015
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Temporal classification of Drosophila segmentation gene expression patterns by the multi-valued neural recognition method. Math Biosci. 2002 Mar; 176(1):145-59.
Score: 0.013
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A method for two-dimensional registration and construction of the two-dimensional atlas of gene expression patterns in situ. In Silico Biol. 2002; 2(2):125-41.
Score: 0.013
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Support vector regression applied to the determination of the developmental age of a Drosophila embryo from its segmentation gene expression patterns. Bioinformatics. 2002; 18 Suppl 1:S87-95.
Score: 0.013
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Registration of the expression patterns of Drosophila segmentation genes by two independent methods. Bioinformatics. 2001 Jan; 17(1):3-12.
Score: 0.012
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HOX Pro: a specialized database for clusters and networks of homeobox genes. Nucleic Acids Res. 2000 Jan 01; 28(1):337-40.
Score: 0.012
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An in silico analysis of robust but fragile gene regulation links enhancer length to robustness. PLoS Comput Biol. 2019 11; 15(11):e1007497.
Score: 0.011
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Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins. Dev Genes Evol. 1998 Jul; 208(5):290-4.
Score: 0.010
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Stripe forming architecture of the gap gene system. Dev Genet. 1998; 23(1):11-27.
Score: 0.010
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Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation. BMC Syst Biol. 2017 Nov 29; 11(1):116.
Score: 0.010
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The analysis of novel distal Cebpa enhancers and silencers using a transcriptional model reveals the complex regulatory logic of hematopoietic lineage specification. Dev Biol. 2016 May 01; 413(1):128-44.
Score: 0.009
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Mechanism of eve stripe formation. Mech Dev. 1995 Jan; 49(1-2):133-58.
Score: 0.008
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Model for cooperative control of positional information in Drosophila by bicoid and maternal hunchback. J Exp Zool. 1995 Jan 01; 271(1):47-56.
Score: 0.008
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Preparation of Drosophila embryos for quantitative imaging of gene expression. Cold Spring Harb Protoc. 2013 Jun 01; 2013(6):533-6.
Score: 0.007
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Quantitative imaging of gene expression in Drosophila embryos. Cold Spring Harb Protoc. 2013 Jun 01; 2013(6):488-97.
Score: 0.007
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Quantitative dynamics and increased variability of segmentation gene expression in the Drosophila Krüppel and knirps mutants. Dev Biol. 2013 Apr 01; 376(1):99-112.
Score: 0.007
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Modeling of gap gene expression in Drosophila Kruppel mutants. PLoS Comput Biol. 2012; 8(8):e1002635.
Score: 0.007
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A connectionist model of development. J Theor Biol. 1991 Oct 21; 152(4):429-53.
Score: 0.007
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Mechanisms of gap gene expression canalization in the Drosophila blastoderm. BMC Syst Biol. 2011; 5:118.
Score: 0.006
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[Studies of stability mechanisms of early embryonal development of fruit fly Drosophila]. Ontogenez. 2011 Jan-Feb; 42(1):3-19.
Score: 0.006
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Control of the initiation of homeotic gene expression by the gap genes giant and tailless in Drosophila. Dev Biol. 1990 Jul; 140(1):57-72.
Score: 0.006
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Size regulation in the segmentation of Drosophila: interacting interfaces between localized domains of gene expression ensure robust spatial patterning. Phys Rev Lett. 2009 Oct 16; 103(16):168102.
Score: 0.006
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GCPReg package for registration of the segmentation gene expression data in Drosophila. Fly (Austin). 2009 Apr-Jun; 3(2):151-6.
Score: 0.005
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Pipeline for acquisition of quantitative data on segmentation gene expression from confocal images. Fly (Austin). 2008 Mar-Apr; 2(2):58-66.
Score: 0.005
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[Methods for acquisition of quantitative from confocal images of gene expression in situ]. Tsitologiia. 2008; 50(4):352-69.
Score: 0.005
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Reverse engineering the gap gene network of Drosophila melanogaster. PLoS Comput Biol. 2006 May; 2(5):e51.
Score: 0.005
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Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila. Proc Natl Acad Sci U S A. 2005 Sep 13; 102(37):13176-81.
Score: 0.004
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Sharp borders from fuzzy gradients. Trends Genet. 2002 Aug; 18(8):385-7.
Score: 0.003
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Thoracic patterning by the Drosophila gap gene hunchback. Dev Biol. 2001 Sep 01; 237(1):79-92.
Score: 0.003
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Transcriptional repression by the Drosophila giant protein: cis element positioning provides an alternative means of interpreting an effector gradient. Development. 1999 Mar; 126(6):1201-10.
Score: 0.003
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Spatio-temporal registration of the expression patterns of Drosophila segmentation genes. Proc Int Conf Intell Syst Mol Biol. 1999; 195-201.
Score: 0.003
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Automated assay of gene expression at cellular resolution. Pac Symp Biocomput. 1998; 6-17.
Score: 0.003