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One or more keywords matched the following items that are connected to Dinner, Aaron
Item TypeName
Concept Models, Chemical
Concept Models, Molecular
Concept Models, Genetic
Concept Models, Theoretical
Concept Linear Models
Concept Models, Immunological
Concept Models, Statistical
Concept Disease Models, Animal
Concept Models, Biological
Academic Article Control of genotypic allelic inclusion through TCR surface expression.
Academic Article B cell antigen receptor signaling and internalization are mutually exclusive events.
Academic Article Multilineage transcriptional priming and determination of alternate hematopoietic cell fates.
Academic Article Mechanistic insights from a quantitative analysis of pollen tube guidance.
Academic Article CHARMM: the biomolecular simulation program.
Academic Article Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives.
Academic Article An incoherent regulatory network architecture that orchestrates B cell diversification in response to antigen signaling.
Academic Article Model for competition from self during passive immunization, with application to broadly neutralizing antibodies for HIV.
Academic Article Polymerization of MIP-1 chemokine (CCL3 and CCL4) and clearance of MIP-1 by insulin-degrading enzyme.
Academic Article Phase resetting reveals network dynamics underlying a bacterial cell cycle.
Academic Article Intracellular transport of insulin granules is a subordinated random walk.
Academic Article Intergenerational continuity of cell shape dynamics in Caulobacter crescentus.
Academic Article Scaling laws governing stochastic growth and division of single bacterial cells.
Academic Article The Pseudomonas aeruginosa multidrug efflux regulator MexR uses an oxidation-sensing mechanism.
Academic Article Using the bias from flow to elucidate single DNA repair protein sliding and interactions with DNA.
Academic Article Using multiscale preconditioning to accelerate the convergence of iterative molecular calculations.
Academic Article Gene regulatory networks in the immune system.
Academic Article Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism.
Academic Article Distribution of directional change as a signature of complex dynamics.
Academic Article A Conserved Bicycle Model for Circadian Clock Control of Membrane Excitability.
Academic Article Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System.
Academic Article The cyanobacterial circadian clock follows midday in vivo and in vitro.
Academic Article Filament rigidity and connectivity tune the deformation modes of active biopolymer networks.
Academic Article Contractile units in disordered actomyosin bundles arise from F-actin buckling.
Academic Article Duplex interrogation by a direct DNA repair protein in search of base damage.
Academic Article Signatures of combinatorial regulation in intrinsic biological noise.
Academic Article A metastable state in folding simulations of a protein model.
Academic Article Understanding beta-hairpin formation.
Academic Article Universality in stochastic exponential growth.
Academic Article Elastic energy storage in beta-sheets with application to F1-ATPase.
Academic Article Short-time evolution in the adaptive immune system.
Academic Article Effects of nonproductive binding on the kinetics of enzymatic reactions with patterned substrates.
Academic Article The folding mechanism of larger model proteins: role of native structure.
Academic Article Grand canonical Monte Carlo simulations of water in protein environments.
Academic Article One of two unstructured domains of Ii becomes ordered in complexes with MHC class II molecules.
Academic Article Nonequilibrium umbrella sampling in spaces of many order parameters.
Academic Article Enhancement of diffusion-controlled reaction rates by surface-induced orientational restriction.
Academic Article Lattice model for self-assembly with application to the formation of cytoskeletal-like structures.
Academic Article A hybrid deterministic-stochastic algorithm for modeling cell signaling dynamics in spatially inhomogeneous environments and under the influence of external fields.
Academic Article Critical behavior of a model for catalyzed autoamplification.
Academic Article Conformational sampling via a self-regulating effective energy surface.
Academic Article A model for TCR gene segment use.
Academic Article A Versatile Framework for Simulating the Dynamic Mechanical Structure of Cytoskeletal Networks.
Academic Article Field theoretic treatment of an effective action for a model of catalyzed autoamplification.
Academic Article Enhanced sampling of nonequilibrium steady states.
Academic Article Use of quantitative structure-property relationships to predict the folding ability of model proteins.
Academic Article How the nature of an observation affects single-trajectory entropies.
Academic Article Understanding protein folding via free-energy surfaces from theory and experiment.
Academic Article Model for how retrograde actin flow regulates adhesion traction stresses.
Academic Article Automatic method for identifying reaction coordinates in complex systems.
Academic Article Nonequilibrium phase diagrams for actomyosin networks.
Academic Article The immunological synapse balances T cell receptor signaling and degradation.
Academic Article Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data.
Academic Article CD4 enhances T cell sensitivity to antigen by coordinating Lck accumulation at the immunological synapse.
Academic Article Molecular dynamics simulations of nucleotide release from the circadian clock protein KaiC reveal atomic-resolution functional insights.
Academic Article Atomistic understanding of kinetic pathways for single base-pair binding and unbinding in DNA.
Academic Article Monte Carlo simulations of biomolecules: The MC module in CHARMM.
Academic Article Dynamic coupling between coordinates in a model for biomolecular isomerization.
Academic Article Defining cooperativity in gene regulation locally through intrinsic noise.
Academic Article Biphasic growth dynamics control cell division in Caulobacter crescentus.
Academic Article How noise statistics impact models of enzyme cycles.
Academic Article Cooperative recruitment of Yan via a high-affinity ETS supersite organizes repression to confer specificity and robustness to cardiac cell fate specification.
Academic Article Implications of alternative substrate binding modes for catalysis by uracil-DNA glycosylase: an apparent discrepancy resolved.
Academic Article Apparent directional scanning for DNA repair.
Academic Article Use of a quantitative structure-property relationship to design larger model proteins that fold rapidly.
Academic Article Models of single-molecule experiments with periodic perturbations reveal hidden dynamics in RNA folding.
Academic Article Delineation of folding pathways of a ß-sheet miniprotein.
Academic Article Uracil-DNA glycosylase acts by substrate autocatalysis.
Academic Article Circadian Clocks Function in Concert with Heat Shock Organizing Protein to Modulate Mutant Huntingtin Aggregation and Toxicity.
Academic Article Mechanical and kinetic factors drive sorting of F-actin cross-linkers on bundles.
Academic Article Bayesian modeling reveals metabolite-dependent ultrasensitivity in the cyanobacterial circadian clock.
Academic Article Kinetic modeling reveals additional regulation at co-transcriptional level by post-transcriptional sRNA regulators.
Grant Robust rare event simulation for protein folding and disease-related aggregation
Grant A systems-level study of signaling networks and differentiation
Grant Rare-event simulation and analysis for elucidating mechanisms of development and disease
Academic Article A unified model for the dynamics of ATP-independent ultrafast contraction.
Academic Article Motor crosslinking augments elasticity in active nematics.
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  • Modeling