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Dinner, Aaron

One or more keywords matched the following items that are connected to Dinner, Aaron

Item Type	Name
Concept	Models, Chemical
Concept	Models, Molecular
Concept	Models, Genetic
Concept	Models, Theoretical
Concept	Linear Models
Concept	Models, Immunological
Concept	Models, Statistical
Concept	Disease Models, Animal
Concept	Models, Biological
Academic Article	Control of genotypic allelic inclusion through TCR surface expression.
Academic Article	B cell antigen receptor signaling and internalization are mutually exclusive events.
Academic Article	Multilineage transcriptional priming and determination of alternate hematopoietic cell fates.
Academic Article	Mechanistic insights from a quantitative analysis of pollen tube guidance.
Academic Article	CHARMM: the biomolecular simulation program.
Academic Article	Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives.
Academic Article	An incoherent regulatory network architecture that orchestrates B cell diversification in response to antigen signaling.
Academic Article	Model for competition from self during passive immunization, with application to broadly neutralizing antibodies for HIV.
Academic Article	Polymerization of MIP-1 chemokine (CCL3 and CCL4) and clearance of MIP-1 by insulin-degrading enzyme.
Academic Article	Phase resetting reveals network dynamics underlying a bacterial cell cycle.
Academic Article	Intracellular transport of insulin granules is a subordinated random walk.
Academic Article	Intergenerational continuity of cell shape dynamics in Caulobacter crescentus.
Academic Article	Scaling laws governing stochastic growth and division of single bacterial cells.
Academic Article	The Pseudomonas aeruginosa multidrug efflux regulator MexR uses an oxidation-sensing mechanism.
Academic Article	Using the bias from flow to elucidate single DNA repair protein sliding and interactions with DNA.
Academic Article	Using multiscale preconditioning to accelerate the convergence of iterative molecular calculations.
Academic Article	Gene regulatory networks in the immune system.
Academic Article	Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism.
Academic Article	Distribution of directional change as a signature of complex dynamics.
Academic Article	A Conserved Bicycle Model for Circadian Clock Control of Membrane Excitability.
Academic Article	Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System.
Academic Article	The cyanobacterial circadian clock follows midday in vivo and in vitro.
Academic Article	Filament rigidity and connectivity tune the deformation modes of active biopolymer networks.
Academic Article	Contractile units in disordered actomyosin bundles arise from F-actin buckling.
Academic Article	Duplex interrogation by a direct DNA repair protein in search of base damage.
Academic Article	Signatures of combinatorial regulation in intrinsic biological noise.
Academic Article	A metastable state in folding simulations of a protein model.
Academic Article	Understanding beta-hairpin formation.
Academic Article	Universality in stochastic exponential growth.
Academic Article	Elastic energy storage in beta-sheets with application to F1-ATPase.
Academic Article	Short-time evolution in the adaptive immune system.
Academic Article	Effects of nonproductive binding on the kinetics of enzymatic reactions with patterned substrates.
Academic Article	The folding mechanism of larger model proteins: role of native structure.
Academic Article	Grand canonical Monte Carlo simulations of water in protein environments.
Academic Article	One of two unstructured domains of Ii becomes ordered in complexes with MHC class II molecules.
Academic Article	Nonequilibrium umbrella sampling in spaces of many order parameters.
Academic Article	Enhancement of diffusion-controlled reaction rates by surface-induced orientational restriction.
Academic Article	Lattice model for self-assembly with application to the formation of cytoskeletal-like structures.
Academic Article	A hybrid deterministic-stochastic algorithm for modeling cell signaling dynamics in spatially inhomogeneous environments and under the influence of external fields.
Academic Article	Critical behavior of a model for catalyzed autoamplification.
Academic Article	Conformational sampling via a self-regulating effective energy surface.
Academic Article	A model for TCR gene segment use.
Academic Article	A Versatile Framework for Simulating the Dynamic Mechanical Structure of Cytoskeletal Networks.
Academic Article	Field theoretic treatment of an effective action for a model of catalyzed autoamplification.
Academic Article	Enhanced sampling of nonequilibrium steady states.
Academic Article	Use of quantitative structure-property relationships to predict the folding ability of model proteins.
Academic Article	How the nature of an observation affects single-trajectory entropies.
Academic Article	Understanding protein folding via free-energy surfaces from theory and experiment.
Academic Article	Model for how retrograde actin flow regulates adhesion traction stresses.
Academic Article	Automatic method for identifying reaction coordinates in complex systems.
Academic Article	Nonequilibrium phase diagrams for actomyosin networks.
Academic Article	The immunological synapse balances T cell receptor signaling and degradation.
Academic Article	Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data.
Academic Article	CD4 enhances T cell sensitivity to antigen by coordinating Lck accumulation at the immunological synapse.
Academic Article	Molecular dynamics simulations of nucleotide release from the circadian clock protein KaiC reveal atomic-resolution functional insights.
Academic Article	Atomistic understanding of kinetic pathways for single base-pair binding and unbinding in DNA.
Academic Article	Monte Carlo simulations of biomolecules: The MC module in CHARMM.
Academic Article	Dynamic coupling between coordinates in a model for biomolecular isomerization.
Academic Article	Defining cooperativity in gene regulation locally through intrinsic noise.
Academic Article	Biphasic growth dynamics control cell division in Caulobacter crescentus.
Academic Article	How noise statistics impact models of enzyme cycles.
Academic Article	Cooperative recruitment of Yan via a high-affinity ETS supersite organizes repression to confer specificity and robustness to cardiac cell fate specification.
Academic Article	Implications of alternative substrate binding modes for catalysis by uracil-DNA glycosylase: an apparent discrepancy resolved.
Academic Article	Apparent directional scanning for DNA repair.
Academic Article	Use of a quantitative structure-property relationship to design larger model proteins that fold rapidly.
Academic Article	Models of single-molecule experiments with periodic perturbations reveal hidden dynamics in RNA folding.
Academic Article	Delineation of folding pathways of a ß-sheet miniprotein.
Academic Article	Uracil-DNA glycosylase acts by substrate autocatalysis.
Academic Article	Circadian Clocks Function in Concert with Heat Shock Organizing Protein to Modulate Mutant Huntingtin Aggregation and Toxicity.
Academic Article	Mechanical and kinetic factors drive sorting of F-actin cross-linkers on bundles.
Academic Article	Bayesian modeling reveals metabolite-dependent ultrasensitivity in the cyanobacterial circadian clock.
Academic Article	Kinetic modeling reveals additional regulation at co-transcriptional level by post-transcriptional sRNA regulators.
Grant	Robust rare event simulation for protein folding and disease-related aggregation
Grant	A systems-level study of signaling networks and differentiation
Grant	Rare-event simulation and analysis for elucidating mechanisms of development and disease
Academic Article	A unified model for the dynamics of ATP-independent ultrafast contraction.
Academic Article	Motor crosslinking augments elasticity in active nematics.

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Modeling