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Dinner, Aaron

One or more keywords matched the following items that are connected to Dinner, Aaron

Item Type	Name
Concept	Computer Simulation
Concept	Molecular Dynamics Simulation
Academic Article	Mechanistic insights from a quantitative analysis of pollen tube guidance.
Academic Article	CHARMM: the biomolecular simulation program.
Academic Article	Filament rigidity and connectivity tune the deformation modes of active biopolymer networks.
Academic Article	A metastable state in folding simulations of a protein model.
Academic Article	Short-time evolution in the adaptive immune system.
Academic Article	Grand canonical Monte Carlo simulations of water in protein environments.
Academic Article	Enhancement of diffusion-controlled reaction rates by surface-induced orientational restriction.
Academic Article	Nucleotide regulation of the structure and dynamics of G-actin.
Academic Article	Conformational sampling via a self-regulating effective energy surface.
Academic Article	A model for TCR gene segment use.
Academic Article	A Versatile Framework for Simulating the Dynamic Mechanical Structure of Cytoskeletal Networks.
Academic Article	Comment on the Communication "The Key to Solving the Protein-Folding Problem Lies in an Accurate Description of the Denatured State" by van Gunsteren et al. We thank Eugene Shakhnovich (Harvard University) for pointing out the references on lattice polymer simulations and very helpful discussions. We also thank Wilfred van Gunsteren for comments on the manuscript. A.R.D. is a Burroughs Wellcome Fund Hitchings-Elion Postdoctoral Fellow. The work done at Harvard was supported in part by the Nat...
Academic Article	Shape dynamics of growing cell walls.
Academic Article	How the nature of an observation affects single-trajectory entropies.
Academic Article	Understanding protein folding via free-energy surfaces from theory and experiment.
Academic Article	Model for how retrograde actin flow regulates adhesion traction stresses.
Academic Article	Automatic method for identifying reaction coordinates in complex systems.
Academic Article	Is protein unfolding the reverse of protein folding? A lattice simulation analysis.
Academic Article	The immunological synapse balances T cell receptor signaling and degradation.
Academic Article	Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data.
Academic Article	CD4 enhances T cell sensitivity to antigen by coordinating Lck accumulation at the immunological synapse.
Academic Article	The roles of stability and contact order in determining protein folding rates.
Academic Article	Molecular dynamics simulations of nucleotide release from the circadian clock protein KaiC reveal atomic-resolution functional insights.
Academic Article	Monte Carlo simulations of biomolecules: The MC module in CHARMM.
Academic Article	Dynamic coupling between coordinates in a model for biomolecular isomerization.
Academic Article	Defining cooperativity in gene regulation locally through intrinsic noise.
Academic Article	Refining Disordered Peptide Ensembles with Computational Amide I Spectroscopy: Application to Elastin-Like Peptides.
Academic Article	Apparent directional scanning for DNA repair.
Academic Article	Multiple Time-Step Dual-Hamiltonian Hybrid Molecular Dynamics - Monte Carlo Canonical Propagation Algorithm.
Academic Article	A two-step nucleotide-flipping mechanism enables kinetic discrimination of DNA lesions by AGT.
Academic Article	Insulin Dissociates by Diverse Mechanisms of Coupled Unfolding and Unbinding.
Academic Article	Machine Learning Force Fields and Coarse-Grained Variables in Molecular Dynamics: Application to Materials and Biological Systems.
Academic Article	Integrated Variational Approach to Conformational Dynamics: A Robust Strategy for Identifying Eigenfunctions of Dynamical Operators.
Academic Article	Long-Time-Scale Predictions from Short-Trajectory Data: A Benchmark Analysis of the Trp-Cage Miniprotein.
Academic Article	Structural Ensemble of the Insulin Monomer.
Grant	Robust rare event simulation for protein folding and disease-related aggregation
Grant	Rare-event simulation and analysis for elucidating mechanisms of development and disease
Academic Article	Dynamics of activation in the voltage-sensing domain of Ciona intestinalis phosphatase Ci-VSP.

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