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Stephens, Matthew

One or more keywords matched the following items that are connected to Stephens, Matthew

Item Type	Name
Concept	Models, Molecular
Concept	Models, Genetic
Concept	Models, Theoretical
Concept	Linear Models
Concept	Models, Statistical
Concept	Models, Biological
Academic Article	Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.
Academic Article	Genome-wide detection and characterization of positive selection in human populations.
Academic Article	Practical issues in imputation-based association mapping.
Academic Article	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays.
Academic Article	Genome-wide efficient mixed-model analysis for association studies.
Academic Article	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).
Academic Article	Absence of the TAP2 human recombination hotspot in chimpanzees.
Academic Article	High-resolution mapping of expression-QTLs yields insight into human gene regulation.
Academic Article	Polygenic modeling with bayesian sparse linear mixed models.
Academic Article	A statistical framework for joint eQTL analysis in multiple tissues.
Academic Article	Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis.
Academic Article	Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation.
Academic Article	msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots.
Academic Article	Fast and accurate estimation of the population-scaled mutation rate, theta, from microsatellite genotype data.
Academic Article	Probabilistic segmentation and intensity estimation for microarray images.
Academic Article	A unified framework for association analysis with multiple related phenotypes.
Academic Article	Using DNA to track the origin of the largest ivory seizure since the 1989 trade ban.
Academic Article	Statistical inference of in vivo properties of human DNA methyltransferases from double-stranded methylation patterns.
Academic Article	An estimate of the average number of recessive lethal mutations carried by humans.
Academic Article	Imputation-based analysis of association studies: candidate regions and quantitative traits.
Academic Article	fastSTRUCTURE: variational inference of population structure in large SNP data sets.
Academic Article	A comparison of bayesian methods for haplotype reconstruction from population genotype data.
Academic Article	A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase.
Academic Article	Linkage disequilibrium-based quality control for large-scale genetic studies.
Academic Article	Efficient multivariate linear mixed model algorithms for genome-wide association studies.
Academic Article	Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data.
Academic Article	msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding.
Academic Article	A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures.
Academic Article	Visualizing spatial population structure with estimated effective migration surfaces.
Academic Article	New evidence for hybrid zones of forest and savanna elephants in Central and West Africa.
Academic Article	False discovery rates: a new deal.
Academic Article	Visualizing the structure of RNA-seq expression data using grade of membership models.
Academic Article	Correction: Visualizing the structure of RNA-seq expression data using grade of membership models.
Academic Article	Estimating Time to the Common Ancestor for a Beneficial Allele.
Academic Article	Large-scale genome-wide enrichment analyses identify new trait-associated genes and pathways across 31 human phenotypes.
Academic Article	Empirical Bayes shrinkage and false discovery rate estimation, allowing for unwanted variation.
Academic Article	Inference and visualization of DNA damage patterns using a grade of membership model.
Academic Article	Genotyping Polyploids from Messy Sequencing Data.
Academic Article	Accurate genomic prediction of Coffea canephora in multiple environments using whole-genome statistical models.
Academic Article	Discovery and characterization of variance QTLs in human induced pluripotent stem cells.
Academic Article	Regional influences on community structure across the tropical-temperate divide.
Academic Article	Detailed modeling of positive selection improves detection of cancer driver genes.
Academic Article	Bayesian multivariate reanalysis of large genetic studies identifies many new associations.
Academic Article	Mendelian randomization accounting for correlated and uncorrelated pleiotropic effects using genome-wide summary statistics.
Academic Article	Separating measurement and expression models clarifies confusion in single-cell RNA sequencing analysis.
Academic Article	Fine-mapping from summary data with the "Sum of Single Effects" model.

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Modeling