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Stephens, Matthew
One or more keywords matched the following items that are connected to Stephens, Matthew
Item TypeName
Concept Models, Molecular
Concept Models, Genetic
Concept Models, Theoretical
Concept Linear Models
Concept Models, Statistical
Concept Models, Biological
Academic Article Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.
Academic Article Genome-wide detection and characterization of positive selection in human populations.
Academic Article Practical issues in imputation-based association mapping.
Academic Article RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays.
Academic Article Genome-wide efficient mixed-model analysis for association studies.
Academic Article Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).
Academic Article Absence of the TAP2 human recombination hotspot in chimpanzees.
Academic Article High-resolution mapping of expression-QTLs yields insight into human gene regulation.
Academic Article Polygenic modeling with bayesian sparse linear mixed models.
Academic Article A statistical framework for joint eQTL analysis in multiple tissues.
Academic Article Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis.
Academic Article Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation.
Academic Article msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots.
Academic Article Fast and accurate estimation of the population-scaled mutation rate, theta, from microsatellite genotype data.
Academic Article Probabilistic segmentation and intensity estimation for microarray images.
Academic Article A unified framework for association analysis with multiple related phenotypes.
Academic Article Using DNA to track the origin of the largest ivory seizure since the 1989 trade ban.
Academic Article Statistical inference of in vivo properties of human DNA methyltransferases from double-stranded methylation patterns.
Academic Article An estimate of the average number of recessive lethal mutations carried by humans.
Academic Article Imputation-based analysis of association studies: candidate regions and quantitative traits.
Academic Article fastSTRUCTURE: variational inference of population structure in large SNP data sets.
Academic Article A comparison of bayesian methods for haplotype reconstruction from population genotype data.
Academic Article A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase.
Academic Article Linkage disequilibrium-based quality control for large-scale genetic studies.
Academic Article Efficient multivariate linear mixed model algorithms for genome-wide association studies.
Academic Article Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data.
Academic Article msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding.
Academic Article A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures.
Academic Article Visualizing spatial population structure with estimated effective migration surfaces.
Academic Article New evidence for hybrid zones of forest and savanna elephants in Central and West Africa.
Academic Article False discovery rates: a new deal.
Academic Article Visualizing the structure of RNA-seq expression data using grade of membership models.
Academic Article Correction: Visualizing the structure of RNA-seq expression data using grade of membership models.
Academic Article Estimating Time to the Common Ancestor for a Beneficial Allele.
Academic Article Large-scale genome-wide enrichment analyses identify new trait-associated genes and pathways across 31 human phenotypes.
Academic Article Empirical Bayes shrinkage and false discovery rate estimation, allowing for unwanted variation.
Academic Article Inference and visualization of DNA damage patterns using a grade of membership model.
Academic Article Genotyping Polyploids from Messy Sequencing Data.
Academic Article Accurate genomic prediction of Coffea canephora in multiple environments using whole-genome statistical models.
Academic Article Discovery and characterization of variance QTLs in human induced pluripotent stem cells.
Academic Article Regional influences on community structure across the tropical-temperate divide.
Academic Article Detailed modeling of positive selection improves detection of cancer driver genes.
Academic Article Bayesian multivariate reanalysis of large genetic studies identifies many new associations.
Academic Article Mendelian randomization accounting for correlated and uncorrelated pleiotropic effects using genome-wide summary statistics.
Academic Article Separating measurement and expression models clarifies confusion in single-cell RNA sequencing analysis.
Academic Article Fine-mapping from summary data with the "Sum of Single Effects" model.
Academic Article A flexible empirical Bayes approach to multivariate multiple regression, and its improved accuracy in predicting multi-tissue gene expression from genotypes.
Academic Article Fast and flexible joint fine-mapping of multiple traits via the Sum of Single Effects model.
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  • Modeling