Item Type | Name |
Concept
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Bacterial Outer Membrane Proteins
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Concept
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Bacterial Proteins
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Concept
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Fungal Proteins
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Concept
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DNA-Binding Proteins
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Concept
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Microfilament Proteins
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Concept
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Nerve Tissue Proteins
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Concept
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Protein Denaturation
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Concept
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Heat-Shock Proteins
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Concept
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Plant Proteins
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Concept
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Protein Binding
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Concept
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Protein Conformation
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Concept
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Protein Processing, Post-Translational
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Concept
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Proteins
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Concept
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Repressor Proteins
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Concept
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Protein Kinases
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Concept
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Staphylococcal Protein A
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Concept
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Protein Engineering
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Concept
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Protein Renaturation
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Concept
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Mitogen-Activated Protein Kinases
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Concept
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Zebrafish Proteins
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Concept
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Neurofilament Proteins
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Concept
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Protein Structure, Tertiary
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Concept
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RNA-Binding Proteins
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Concept
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Phosphatidylethanolamine Binding Protein
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Concept
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Protein Transport
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Concept
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Protein Structure, Secondary
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Concept
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Protein Interaction Mapping
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Concept
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Receptors, G-Protein-Coupled
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Concept
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bcl-2-Associated X Protein
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Concept
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Saccharomyces cerevisiae Proteins
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Concept
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Databases, Protein
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Concept
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Recombinant Proteins
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Concept
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Protein Interaction Domains and Motifs
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Concept
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Protein Multimerization
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Concept
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Viral Proteins
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Concept
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GTP-Binding Proteins
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Concept
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Sequence Analysis, Protein
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Concept
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Antifreeze Proteins
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Concept
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Molecular Motor Proteins
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Concept
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Structural Homology, Protein
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Concept
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Mutant Proteins
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Concept
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Escherichia coli Proteins
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Concept
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Protein Interaction Maps
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Concept
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Arthropod Proteins
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Concept
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Intracellular Signaling Peptides and Proteins
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Concept
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Proto-Oncogene Proteins c-fyn
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Concept
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Viral Regulatory and Accessory Proteins
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Concept
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Protein Stability
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Concept
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Protein Unfolding
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Concept
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Carrier Proteins
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Concept
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Membrane Transport Proteins
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Concept
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Vesicular Transport Proteins
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Concept
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Poly(A)-Binding Proteins
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Concept
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Protein Kinase Inhibitors
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Concept
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Maltose-Binding Proteins
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Academic Article
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Mechanisms and uses of hydrogen exchange.
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Academic Article
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Solution structure of the cAMP-dependent protein kinase catalytic subunit and its contraction upon binding the protein kinase inhibitor peptide.
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Academic Article
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Protein minimization: downsizing through mutation.
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Academic Article
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The role of helix formation in the folding of a fully alpha-helical coiled coil.
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Academic Article
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Molecular collapse: the rate-limiting step in two-state cytochrome c folding.
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Academic Article
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The burst phase in ribonuclease A folding and solvent dependence of the unfolded state.
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Academic Article
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Thymosin beta 4 binds actin in an extended conformation and contacts both the barbed and pointed ends.
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Academic Article
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Hydrogen exchange: the modern legacy of Linderstrøm-Lang.
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Academic Article
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Distinguishing between two-state and three-state models for ubiquitin folding.
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Academic Article
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Ultrafast signals in protein folding and the polypeptide contracted state.
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Academic Article
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Denatured states of ribonuclease A have compact dimensions and residual secondary structure.
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Academic Article
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PAS domain receptor photoactive yellow protein is converted to a molten globule state upon activation.
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Academic Article
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Viscosity dependence of the folding kinetics of a dimeric and monomeric coiled coil.
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Academic Article
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Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity.
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Academic Article
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Folding of a large ribozyme during transcription and the effect of the elongation factor NusA.
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Academic Article
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Trifluoroethanol promotes helix formation by destabilizing backbone exposure: desolvation rather than native hydrogen bonding defines the kinetic pathway of dimeric coiled coil folding.
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Academic Article
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D/H amide kinetic isotope effects reveal when hydrogen bonds form during protein folding.
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Academic Article
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Transition state heterogeneity in GCN4 coiled coil folding studied by using multisite mutations and crosslinking.
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Academic Article
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Dynamics of hydrogen bond desolvation in protein folding.
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Academic Article
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A thermodynamic framework and cooperativity in the tertiary folding of a Mg2+-dependent ribozyme.
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Academic Article
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Entropic benefit of a cross-link in protein association.
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Academic Article
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Engineered metal binding sites map the heterogeneous folding landscape of a coiled coil.
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Academic Article
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The Bacillus subtilis RNase P holoenzyme contains two RNase P RNA and two RNase P protein subunits.
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Academic Article
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Distinguishing foldable proteins from nonfolders: when and how do they differ?
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Academic Article
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Large-scale context in protein folding: villin headpiece.
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Academic Article
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D/H amide isotope effect in model alpha-helical peptides.
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Academic Article
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Contribution of hydrogen bonding to protein stability estimated from isotope effects.
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Academic Article
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Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects.
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Academic Article
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Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides.
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Academic Article
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Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme.
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Academic Article
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The thermodynamic origin of the stability of a thermophilic ribozyme.
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Academic Article
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Discerning the structure and energy of multiple transition states in protein folding using psi-analysis.
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Academic Article
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Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding.
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Academic Article
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Fast folding of a helical protein initiated by the collision of unstructured chains.
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Academic Article
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Mechanistic insights on the folding of a large ribozyme during transcription.
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Academic Article
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Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins.
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Academic Article
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Comment on "Force-clamp spectroscopy monitors the folding trajectory of a single protein".
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Academic Article
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Expression in Escherichia coli and characterization of the heat-stable inhibitor of the cAMP-dependent protein kinase.
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Academic Article
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Characterizing protein folding transition States using Psi-analysis.
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Academic Article
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PII structure in the model peptides for unfolded proteins: studies on ubiquitin fragments and several alanine-rich peptides containing QQQ, SSS, FFF, and VVV.
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Academic Article
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Methods for the accurate estimation of confidence intervals on protein folding phi-values.
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Academic Article
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RNA folding during transcription.
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Academic Article
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Folding of a universal ribozyme: the ribonuclease P RNA.
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Academic Article
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The highly cooperative folding of small naturally occurring proteins is likely the result of natural selection.
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Academic Article
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Random-coil behavior and the dimensions of chemically unfolded proteins.
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Academic Article
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Kinetic barriers and the role of topology in protein and RNA folding.
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Academic Article
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Quantifying the structural requirements of the folding transition state of protein A and other systems.
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Academic Article
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Light-activated DNA binding in a designed allosteric protein.
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Academic Article
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Barrier-limited, microsecond folding of a stable protein measured with hydrogen exchange: Implications for downhill folding.
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Academic Article
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Intramolecular cross-linking evaluated as a structural probe of the protein folding transition state.
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Academic Article
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Outcome of a workshop on applications of protein models in biomedical research.
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Academic Article
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Psi-constrained simulations of protein folding transition states: implications for calculating.
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Academic Article
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Characterizing the protein folding transition state using psi analysis.
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Academic Article
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On the precision of experimentally determined protein folding rates and phi-values.
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Academic Article
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Polypeptide motions are dominated by peptide group oscillations resulting from dihedral angle correlations between nearest neighbors.
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Academic Article
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Small proteins fold through transition states with native-like topologies.
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Academic Article
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A probabilistic and continuous model of protein conformational space for template-free modeling.
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Academic Article
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Extended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion.
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Academic Article
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Protein vivisection reveals elusive intermediates in folding.
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Academic Article
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Rationally improving LOV domain-based photoswitches.
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Academic Article
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Ubiquitin is a novel substrate for human insulin-degrading enzyme.
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Academic Article
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The folding of single domain proteins--have we reached a consensus?
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Academic Article
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Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification.
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Academic Article
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A "Link-Psi" strategy using crosslinking indicates that the folding transition state of ubiquitin is not very malleable.
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Academic Article
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Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scattering.
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Academic Article
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De novo prediction of protein folding pathways and structure using the principle of sequential stabilization.
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Academic Article
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Small-angle X-ray scattering and single-molecule FRET spectroscopy produce highly divergent views of the low-denaturant unfolded state.
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Academic Article
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Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch.
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Academic Article
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TULIPs: tunable, light-controlled interacting protein tags for cell biology.
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Academic Article
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On docking, scoring and assessing protein-DNA complexes in a rigid-body framework.
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Academic Article
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Biochemistry. How proteins fold.
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Academic Article
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Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library.
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Academic Article
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Probing the folding transition state of ubiquitin mutants by temperature-jump-induced downhill unfolding.
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Academic Article
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Protein structure prediction enhanced with evolutionary diversity: SPEED.
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Academic Article
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Modeling large regions in proteins: applications to loops, termini, and folding.
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Academic Article
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The folding transition state of protein L is extensive with nonnative interactions (and not small and polarized).
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Academic Article
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Modeling the hydration layer around proteins: HyPred.
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Academic Article
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Automated real-space refinement of protein structures using a realistic backbone move set.
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Academic Article
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Fully reduced ribonuclease A does not expand at high denaturant concentration or temperature.
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Academic Article
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The barriers in protein folding.
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Academic Article
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Protein folding intermediates: native-state hydrogen exchange.
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Academic Article
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Structures of fd gene 5 protein.nucleic acid complexes: a combined solution scattering and electron microscopy study.
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Academic Article
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The rate-limiting step in the folding of a large ribozyme without kinetic traps.
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Academic Article
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Early collapse is not an obligate step in protein folding.
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Academic Article
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Differences in the folding transition state of ubiquitin indicated by phi and psi analyses.
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Academic Article
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Statistical coil model of the unfolded state: resolving the reconciliation problem.
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Academic Article
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Minimalist representations and the importance of nearest neighbor effects in protein folding simulations.
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Academic Article
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Principal determinants leading to transition state formation of a protein-protein complex, orientation trumps side-chain interactions.
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Academic Article
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Metal binding kinetics of bi-histidine sites used in psi analysis: evidence of high-energy protein folding intermediates.
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Academic Article
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Mimicking the folding pathway to improve homology-free protein structure prediction.
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Academic Article
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The amino-terminal helix modulates light-activated conformational changes in AsLOV2.
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Academic Article
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Context and force field dependence of the loss of protein backbone entropy upon folding using realistic denatured and native state ensembles.
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Academic Article
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Simplified protein models: predicting folding pathways and structure using amino acid sequences.
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Academic Article
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Discovering RNA-protein interactome by using chemical context profiling of the RNA-protein interface.
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Academic Article
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Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations.
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Academic Article
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Benchmarking all-atom simulations using hydrogen exchange.
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Academic Article
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Ionic strength independence of charge distributions in solvation of biomolecules.
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Academic Article
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Folding of a large protein at high structural resolution.
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Academic Article
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Revealing what gets buried first in protein folding.
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Academic Article
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Factors that control the chemistry of the LOV domain photocycle.
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Academic Article
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Investigating models of protein function and allostery with a widespread mutational analysis of a light-activated protein.
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Academic Article
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Random coil negative control reproduces the discrepancy between scattering and FRET measurements of denatured protein dimensions.
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Academic Article
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Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar.
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Academic Article
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Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange.
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Academic Article
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Introduction of a polar core into the de novo designed protein Top7.
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Academic Article
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Aromatic claw: A new fold with high aromatic content that evades structural prediction.
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Academic Article
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The Pentablock Amphiphilic Copolymer T1107 Prevents Aggregation of Denatured and Reduced Lysozyme.
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Academic Article
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Perplexing cooperative folding and stability of a low-sequence complexity, polyproline 2 protein lacking a hydrophobic core.
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Academic Article
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Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response.
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Academic Article
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Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water.
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Academic Article
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A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations.
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Academic Article
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Conserved salt-bridge competition triggered by phosphorylation regulates the protein interactome.
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Academic Article
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Response to Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water".
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Academic Article
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Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours.
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Academic Article
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Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics.
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Academic Article
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Commonly used FRET fluorophores promote collapse of an otherwise disordered protein.
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Academic Article
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On the Interpretation of Force-Induced Unfolding Studies of Membrane Proteins Using Fast Simulations.
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Academic Article
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Structural basis for adhesion G protein-coupled receptor Gpr126 function.
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Academic Article
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Water as a Good Solvent for Unfolded Proteins: Folding and Collapse are Fundamentally Different.
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Academic Article
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Properties of protein unfolded states suggest broad selection for expanded conformational ensembles.
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Academic Article
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Folding and misfolding of potassium channel monomers during assembly and tetramerization.
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Academic Article
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Engineered Metal-Binding Sites to Probe Protein Folding Transition States: Psi Analysis.
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Academic Article
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Prediction and Validation of a Protein's Free Energy Surface Using Hydrogen Exchange and (Importantly) Its Denaturant Dependence.
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Academic Article
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Lipid bilayer induces contraction of the denatured state ensemble of a helical-bundle membrane protein.
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Academic Article
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Challenges and Advantages of Accounting for Backbone Flexibility in Prediction of Protein-Protein Complexes.
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Academic Article
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HDX-MS performed on BtuB in E. coli outer membranes delineates the luminal domain's allostery and unfolding upon B12 and TonB binding.
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Academic Article
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Development of in vivo HDX-MS with applications to a TonB-dependent transporter and other proteins.
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Academic Article
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Factors That Control the Force Needed to Unfold a Membrane Protein in Silico Depend on the Mode of Denaturation.
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Concept
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Protein Domains
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Concept
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Protein Conformation, alpha-Helical
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Concept
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Intrinsically Disordered Proteins
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Concept
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Protein Aggregates
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Academic Article
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Folding of prestin's anion-binding site and the mechanism of outer hair cell electromotility.
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Academic Article
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HDX-MS finds that partial unfolding with sequential domain activation controls condensation of a cellular stress marker.
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Academic Article
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How hydrophobicity, side chains, and salt affect the dimensions of disordered proteins.
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