| Item Type | Name |
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Concept
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Herpesvirus 4, Human
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Concept
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Humans
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Concept
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Genome, Human
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Academic Article
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Sex-specific genetic architecture of human disease.
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Academic Article
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Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.
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Academic Article
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Sex-specific and lineage-specific alternative splicing in primates.
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Academic Article
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Understanding mechanisms underlying human gene expression variation with RNA sequencing.
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Academic Article
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Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data.
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Academic Article
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Noisy splicing drives mRNA isoform diversity in human cells.
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Academic Article
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The effects of EBV transformation on gene expression levels and methylation profiles.
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Academic Article
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Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data.
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Academic Article
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Characterizing natural variation using next-generation sequencing technologies.
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Academic Article
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Genomics: ENCODE explained.
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Academic Article
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Dissecting the regulatory architecture of gene expression QTLs.
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Academic Article
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Time-dependent transcriptional profiling links gene expression to mitogen-activated protein kinase kinase 4 (MKK4)-mediated suppression of omental metastatic colonization.
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Academic Article
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The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels.
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Academic Article
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Revealing the architecture of gene regulation: the promise of eQTL studies.
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Academic Article
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Expression quantitative trait loci detected in cell lines are often present in primary tissues.
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Academic Article
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The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes.
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Academic Article
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Using genomic tools to study regulatory evolution.
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Academic Article
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DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.
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Academic Article
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A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues.
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Academic Article
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False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions.
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Academic Article
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Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".
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Academic Article
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Regulatory element copy number differences shape primate expression profiles.
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Academic Article
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Functional comparison of innate immune signaling pathways in primates.
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Academic Article
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Gene expression differences among primates are associated with changes in a histone epigenetic modification.
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Academic Article
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A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar.
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Academic Article
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Comparative RNA sequencing reveals substantial genetic variation in endangered primates.
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Academic Article
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DNase?I sensitivity QTLs are a major determinant of human expression variation.
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Academic Article
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High-resolution mapping of expression-QTLs yields insight into human gene regulation.
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Academic Article
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Gene regulation in primates evolves under tissue-specific selection pressures.
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Academic Article
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Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection.
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Academic Article
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Controls of nucleosome positioning in the human genome.
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Academic Article
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General olfactory sensitivity database (GOSdb): candidate genes and their genomic variations.
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Academic Article
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Comparative studies of gene regulatory mechanisms.
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Academic Article
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The effect of freeze-thaw cycles on gene expression levels in lymphoblastoid cell lines.
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Academic Article
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Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels.
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Academic Article
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Social environmental effects on gene regulation.
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Academic Article
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Epigenetic modifications are associated with inter-species gene expression variation in primates.
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Academic Article
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Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature.
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Academic Article
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The genetic and mechanistic basis for variation in gene regulation.
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Academic Article
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Genomic variation. Impact of regulatory variation from RNA to protein.
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Academic Article
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Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes.
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Academic Article
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Identification of genetic variants that affect histone modifications in human cells.
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Academic Article
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Primate transcript and protein expression levels evolve under compensatory selection pressures.
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Academic Article
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Does a unique olfactory genome imply a unique olfactory world?
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Academic Article
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Seasonal variation in human gut microbiome composition.
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Academic Article
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The functional consequences of variation in transcription factor binding.
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Academic Article
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Host genetic variation influences gene expression response to rhinovirus infection.
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Academic Article
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Comparative metabolomics in primates reveals the effects of diet and gene regulatory variation on metabolic divergence.
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Academic Article
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RNA-seq: impact of RNA degradation on transcript quantification.
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Academic Article
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A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics.
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Academic Article
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msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding.
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Academic Article
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Metastasis Suppressors Regulate the Tumor Microenvironment by Blocking Recruitment of Prometastatic Tumor-Associated Macrophages.
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Academic Article
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WASP: allele-specific software for robust molecular quantitative trait locus discovery.
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Academic Article
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Genome-Wide Association Studies of the Human Gut Microbiota.
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Academic Article
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Mycobacterial infection induces a specific human innate immune response.
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Academic Article
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Bacterial infection remodels the DNA methylation landscape of human dendritic cells.
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Academic Article
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Synthesis, biological studies and molecular dynamics of new anticancer RGD-based peptide conjugates for targeted drug delivery.
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Academic Article
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Genetic Variation, Not Cell Type of Origin, Underlies the Majority of Identifiable Regulatory Differences in iPSCs.
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Academic Article
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RNA splicing is a primary link between genetic variation and disease.
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Academic Article
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Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling.
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Academic Article
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The human olfactory transcriptome.
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Academic Article
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Integrated analyses of gene expression and genetic association studies in a founder population.
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Academic Article
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DNA methylation in lung cells is associated with asthma endotypes and genetic risk.
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Academic Article
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Gene expression in local stroma reflects breast tumor states and predicts patient outcome.
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Academic Article
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Batch effects and the effective design of single-cell gene expression studies.
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Academic Article
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Host genetic variation in mucosal immunity pathways influences the upper airway microbiome.
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Academic Article
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Reducing mitochondrial reads in ATAC-seq using CRISPR/Cas9.
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Academic Article
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Impact of regulatory variation across human iPSCs and differentiated cells.
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Academic Article
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Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs.
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Academic Article
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A Methodological Assessment and Characterization of Genetically-Driven Variation in Three Human Phosphoproteomes.
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Academic Article
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Human genomics: Cracking the regulatory code.
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Academic Article
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A comparative study of endoderm differentiation in humans and chimpanzees.
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Academic Article
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A Comparative Assessment of Human and Chimpanzee iPSC-derived Cardiomyocytes with Primary Heart Tissues.
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Academic Article
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Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells.
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Academic Article
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Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes.
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Academic Article
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A generally conserved response to hypoxia in iPSC-derived cardiomyocytes from humans and chimpanzees.
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Academic Article
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Discovery and characterization of variance QTLs in human induced pluripotent stem cells.
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Academic Article
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Dynamic genetic regulation of gene expression during cellular differentiation.
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Academic Article
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Reorganization of 3D genome structure may contribute to gene regulatory evolution in primates.
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Academic Article
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A comparison of gene expression and DNA methylation patterns across tissues and species.
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Academic Article
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Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation.
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Academic Article
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Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis.
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Academic Article
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Effective study design for comparative functional genomics.
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Academic Article
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Prime time for primate functional genomics.
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Academic Article
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Alternative polyadenylation mediates genetic regulation of gene expression.
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Academic Article
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Where Are the Disease-Associated eQTLs?
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Academic Article
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Gene expression variability in human and chimpanzee populations share common determinants.
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Academic Article
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A TAD Skeptic: Is 3D Genome Topology Conserved?
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Academic Article
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Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes.
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Academic Article
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Divergence in alternative polyadenylation contributes to gene regulatory differences between humans and chimpanzees.
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Academic Article
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Functional dynamic genetic effects on gene regulation are specific to particular cell types and environmental conditions.
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Academic Article
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Benchmarking sequencing methods and tools that facilitate the study of alternative polyadenylation.
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Academic Article
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Single-cell sequencing reveals lineage-specific dynamic genetic regulation of gene expression during human cardiomyocyte differentiation.
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Academic Article
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Human embryoid bodies as a novel system for genomic studies of functionally diverse cell types.
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Grant
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Analysis and interpretation of noncoding regulatory variation
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Grant
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A National iPS Cell Network with Deep Phenotyping for Translational Research
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Grant
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eQTL mapping in iPSC-derived differentiated cardiomyocytes
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Grant
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Mapping QTLs Associated with Variation in RNA Decay Rates
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Grant
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Characterizing and mapping gene regulatory robustness in cardiomyoctes
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Grant
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The evolution of human specific regulatory pathways
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Grant
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Using single cell RNA-seq to study regulatory noise and robustness
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Grant
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Natural Selection on Gene Regulation in Humans
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Grant
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Genes, genomes, and genotoxicity: in vivo epigenetic toxicology of 1,3-butadiene
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Academic Article
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The relationship between regulatory changes in cis and trans and the evolution of gene expression in humans and chimpanzees.
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Academic Article
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Induced Pluripotent Stem Cells in Disease Biology and the Evidence for Their In Vitro Utility.
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Grant
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No Cell Left Behind: Using Embryoid Bodies to Understand Human Biology
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Academic Article
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Oxygen-induced stress reveals context-specific gene regulatory effects in human brain organoids.
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