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Stephens, Matthew

One or more keywords matched the following items that are connected to Stephens, Matthew

Item Type	Name
Concept	Genome
Concept	Human Genome Project
Concept	Genome, Plant
Concept	Genome, Human
Concept	Genome-Wide Association Study
Academic Article	Genome-wide detection and characterization of positive selection in human populations.
Academic Article	Practical issues in imputation-based association mapping.
Academic Article	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays.
Academic Article	Genome-wide association of lipid-lowering response to statins in combined study populations.
Academic Article	Sex-specific and lineage-specific alternative splicing in primates.
Academic Article	Genome-wide efficient mixed-model analysis for association studies.
Academic Article	Fast and accurate genotype imputation in genome-wide association studies through pre-phasing.
Academic Article	Dissecting the regulatory architecture of gene expression QTLs.
Academic Article	The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels.
Academic Article	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).
Academic Article	Genotype imputation with thousands of genomes.
Academic Article	Next generation analytic tools for large scale genetic epidemiology studies of complex diseases.
Academic Article	Variation in human recombination rates and its genetic determinants.
Academic Article	Comparative RNA sequencing reveals substantial genetic variation in endangered primates.
Academic Article	DNase?I sensitivity QTLs are a major determinant of human expression variation.
Academic Article	High-resolution mapping of expression-QTLs yields insight into human gene regulation.
Academic Article	Genes mirror geography within Europe.
Academic Article	Response to Cavalli-Sforza interview [Human Biology 82(3):245-266 (June 2010)].
Academic Article	Polygenic modeling with bayesian sparse linear mixed models.
Academic Article	A statistical framework for joint eQTL analysis in multiple tissues.
Academic Article	Epigenetic modifications are associated with inter-species gene expression variation in primates.
Academic Article	An estimate of the average number of recessive lethal mutations carried by humans.
Academic Article	Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's disease.
Academic Article	A multivariate genome-wide association analysis of 10 LDL subfractions, and their response to statin treatment, in 1868 Caucasians.
Academic Article	Bayesian statistical methods for genetic association studies.
Academic Article	fastSTRUCTURE: variational inference of population structure in large SNP data sets.
Academic Article	Evidence for substantial fine-scale variation in recombination rates across the human genome.
Academic Article	Efficient multivariate linear mixed model algorithms for genome-wide association studies.
Academic Article	A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures.
Academic Article	Variance adaptive shrinkage (vash): flexible empirical Bayes estimation of variances.
Academic Article	Estimating Time to the Common Ancestor for a Beneficial Allele.
Academic Article	BAYESIAN LARGE-SCALE MULTIPLE REGRESSION WITH SUMMARY STATISTICS FROM GENOME-WIDE ASSOCIATION STUDIES.
Academic Article	Large-scale genome-wide enrichment analyses identify new trait-associated genes and pathways across 31 human phenotypes.
Academic Article	Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs.
Academic Article	Inference and visualization of DNA damage patterns using a grade of membership model.
Academic Article	Accurate genomic prediction of Coffea canephora in multiple environments using whole-genome statistical models.
Academic Article	Discovery and characterization of variance QTLs in human induced pluripotent stem cells.
Academic Article	Bayesian multivariate reanalysis of large genetic studies identifies many new associations.
Academic Article	Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis.
Academic Article	Publisher Correction: Mendelian randomization accounting for correlated and uncorrelated pleiotropic effects using genome-wide summary statistics.
Academic Article	Mendelian randomization accounting for correlated and uncorrelated pleiotropic effects using genome-wide summary statistics.
Academic Article	Genetic analyses support the contribution of mRNA N6-methyladenosine (m6A) modification to human disease heritability.
Academic Article	The impact of sex on gene expression across human tissues.
Academic Article	Exploiting the GTEx resources to decipher the mechanisms at GWAS loci.
Academic Article	Fine-mapping studies distinguish genetic risks for childhood- and adult-onset asthma in the HLA region.
Grant	Multipoint and significance methods for genome-wide association studies
Grant	Statistical analysis of gene expression quantitative trait loci (eQTL)
Grant	Genome analysis: statistical methods and applications
Academic Article	GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership.
Academic Article	Adjusting for genetic confounders in transcriptome-wide association studies improves discovery of risk genes of complex traits.
Grant	Genome analysis: statistical methods and applications

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Genome