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Mining coherent dense subgraphs across massive biological networks for functional discovery.
Bayesian approach to transforming public gene expression repositories into disease diagnosis databases.
An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer.
Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.
Discovery of multi-dimensional modules by integrative analysis of cancer genomic data.
An integrative network approach to map the transcriptome to the phenome.
Matrix factorization methods for integrative cancer genomics.
A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics.
TopDom: an efficient and deterministic method for identifying topological domains in genomes.