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A population genetics-phylogenetics approach to inferring natural selection in coding sequences.
Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease.
Campylobacter genotyping to determine the source of human infection.
Utilizing a combination of molecular and spatial tools to assess the effect of a public health intervention.
Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1.
Bayesian reconstruction of transmission within outbreaks using genomic variants.
Evolution of the human immunodeficiency virus envelope gene is dominated by purifying selection.
Estimating diversifying selection and functional constraint in the presence of recombination.
Bayesian inference of ancestral dates on bacterial phylogenetic trees.
Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system.
Machine learning to predict the source of campylobacteriosis using whole genome data.