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Sosnick, Tobin R.

One or more keywords matched the following items that are connected to Sosnick, Tobin R.

Item Type	Name
Concept	Protein Conformation
Academic Article	Mechanisms and uses of hydrogen exchange.
Academic Article	Protein minimization: downsizing through mutation.
Academic Article	The role of helix formation in the folding of a fully alpha-helical coiled coil.
Academic Article	Thymosin beta 4 binds actin in an extended conformation and contacts both the barbed and pointed ends.
Academic Article	Denatured states of ribonuclease A have compact dimensions and residual secondary structure.
Academic Article	Trifluoroethanol promotes helix formation by destabilizing backbone exposure: desolvation rather than native hydrogen bonding defines the kinetic pathway of dimeric coiled coil folding.
Academic Article	Dynamics of hydrogen bond desolvation in protein folding.
Academic Article	Engineered metal binding sites map the heterogeneous folding landscape of a coiled coil.
Academic Article	Distinguishing foldable proteins from nonfolders: when and how do they differ?
Academic Article	Large-scale context in protein folding: villin headpiece.
Academic Article	Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides.
Academic Article	Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme.
Academic Article	The thermodynamic origin of the stability of a thermophilic ribozyme.
Academic Article	Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding.
Academic Article	Expression in Escherichia coli and characterization of the heat-stable inhibitor of the cAMP-dependent protein kinase.
Academic Article	Characterizing protein folding transition States using Psi-analysis.
Academic Article	Folding of a universal ribozyme: the ribonuclease P RNA.
Academic Article	Kinetic barriers and the role of topology in protein and RNA folding.
Academic Article	Outcome of a workshop on applications of protein models in biomedical research.
Academic Article	Polypeptide motions are dominated by peptide group oscillations resulting from dihedral angle correlations between nearest neighbors.
Academic Article	A probabilistic and continuous model of protein conformational space for template-free modeling.
Academic Article	Extended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion.
Academic Article	A "Link-Psi" strategy using crosslinking indicates that the folding transition state of ubiquitin is not very malleable.
Academic Article	Small-angle X-ray scattering and single-molecule FRET spectroscopy produce highly divergent views of the low-denaturant unfolded state.
Academic Article	On docking, scoring and assessing protein-DNA complexes in a rigid-body framework.
Academic Article	Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library.
Academic Article	Protein structure prediction enhanced with evolutionary diversity: SPEED.
Academic Article	Modeling large regions in proteins: applications to loops, termini, and folding.
Academic Article	Protein folding intermediates: native-state hydrogen exchange.
Academic Article	Structures of fd gene 5 protein.nucleic acid complexes: a combined solution scattering and electron microscopy study.
Academic Article	Metal binding kinetics of bi-histidine sites used in psi analysis: evidence of high-energy protein folding intermediates.
Academic Article	Folding of a large protein at high structural resolution.
Academic Article	Factors that control the chemistry of the LOV domain photocycle.
Academic Article	Random coil negative control reproduces the discrepancy between scattering and FRET measurements of denatured protein dimensions.
Academic Article	Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange.
Academic Article	Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water.
Academic Article	A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations.
Academic Article	Response to Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water".
Academic Article	Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours.
Academic Article	Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics.
Academic Article	Commonly used FRET fluorophores promote collapse of an otherwise disordered protein.
Academic Article	Structural basis for adhesion G protein-coupled receptor Gpr126 function.
Academic Article	Water as a Good Solvent for Unfolded Proteins: Folding and Collapse are Fundamentally Different.
Academic Article	Properties of protein unfolded states suggest broad selection for expanded conformational ensembles.
Academic Article	Folding and misfolding of potassium channel monomers during assembly and tetramerization.
Academic Article	Prediction and Validation of a Protein's Free Energy Surface Using Hydrogen Exchange and (Importantly) Its Denaturant Dependence.
Academic Article	Lipid bilayer induces contraction of the denatured state ensemble of a helical-bundle membrane protein.
Academic Article	Challenges and Advantages of Accounting for Backbone Flexibility in Prediction of Protein-Protein Complexes.
Concept	Protein Conformation, alpha-Helical

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Protein Conformation