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Seppe Kuehn

TitleAssistant Professor
InstitutionUniversity of Chicago
DepartmentEcology and Evolution
AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Lee KK, Liu S, Crocker K, Huggins DR, Tikhonov M, Mani M, Kuehn S. Functional phases define the response of the soil microbiome to environmental change. bioRxiv. 2024 Mar 28. PMID: 38559185; PMCID: PMC10980070.
    2. Li Z, Selim A, Kuehn S. Statistical prediction of microbial metabolic traits from genomes. PLoS Comput Biol. 2023 Dec; 19(12):e1011705. PMID: 38113208; PMCID: PMC10729968.
      Citations:    Fields:    Translation:HumansCells
    3. Crocker K, Lee KK, Chakraverti-Wuerthwein M, Li Z, Tikhonov M, Mani M, Gowda K, Kuehn S, Crocker K, Lee KK, Chakraverti-Wuerthwein M, Li Z, Tikhonov M, Mani M, Gowda K, Kuehn S. Global patterns in gene content of soil microbiomes emerge from microbial interactions. bioRxiv. 2023 Nov 15. PMID: 38014336; PMCID: PMC10680560.
    4. Skwara A, Gowda K, Yousef M, Diaz-Colunga J, Raman AS, Sanchez A, Tikhonov M, Kuehn S. Statistically learning the functional landscape of microbial communities. Nat Ecol Evol. 2023 Nov; 7(11):1823-1833. PMID: 37783827.
      Citations: 7     Fields:    Translation:Humans
    5. Li Z, Sinha V, Kuehn S. Constraints on microbial metabolic complexity. Nat Microbiol. 2023 Oct; 8(10):1756-1757. PMID: 37679599.
      Citations:    Fields:    
    6. Prabhakara KH, Kuehn S. Algae drive convergent bacterial community assembly at low dilution frequency. iScience. 2023 Jun 16; 26(6):106879. PMID: 37275519; PMCID: PMC10238937.
      Citations: 1     
    7. Gowda K, Kuehn S. Microbial biofilms: An ecological tale of Jekyll and Hyde. Curr Biol. 2022 Dec 19; 32(24):R1349-R1351. PMID: 36538887.
      Citations:    Fields:    
    8. Gowda K, Ping D, Mani M, Kuehn S. Genomic structure predicts metabolite dynamics in microbial communities. Cell. 2022 02 03; 185(3):530-546.e25. PMID: 35085485.
      Citations: 28     Fields:    Translation:Cells
    9. Gopalakrishnappa C, Gowda K, Prabhakara KH, Kuehn S. An ensemble approach to the structure-function problem in microbial communities. iScience. 2022 Feb 18; 25(2):103761. PMID: 35141504; PMCID: PMC8810406.
      Citations: 6     
    10. de Jesús Astacioa LM, Prabhakara KH, Li Z, Mickalide H, Kuehn S. Closed microbial communities self-organize to persistently cycle carbon. Proc Natl Acad Sci U S A. 2021 11 09; 118(45). PMID: 34740965; PMCID: PMC8609437.
      Citations: 9     Fields:    Translation:AnimalsCells
    11. Fraebel DT, Gowda K, Mani M, Kuehn S. Evolution of Generalists by Phenotypic Plasticity. iScience. 2020 Nov 20; 23(11):101678. PMID: 33163936; PMCID: PMC7600391.
      Citations: 7     
    12. Ping D, Wang T, Fraebel DT, Maslov S, Sneppen K, Kuehn S. Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations. ISME J. 2020 08; 14(8):2007-2018. PMID: 32358533; PMCID: PMC7367814.
      Citations: 9     Fields:    Translation:HumansCells
    13. Mickalide H, Kuehn S. Higher-Order Interaction between Species Inhibits Bacterial Invasion of a Phototroph-Predator Microbial Community. Cell Syst. 2019 12 18; 9(6):521-533.e10. PMID: 31838145.
      Citations: 37     Fields:    Translation:AnimalsCells
    14. Merritt J, Kuehn S. Frequency- and Amplitude-Dependent Microbial Population Dynamics during Cycles of Feast and Famine. Phys Rev Lett. 2018 Aug 31; 121(9):098101. PMID: 30230885.
      Citations: 3     Fields:    Translation:Cells
    15. Shih HY, Mickalide H, Fraebel DT, Goldenfeld N, Kuehn S. Biophysical constraints determine the selection of phenotypic fluctuations during directed evolution. Phys Biol. 2018 07 27; 15(6):065003. PMID: 29762139.
      Citations: 3     Fields:    Translation:Cells
    16. Fraebel DT, Mickalide H, Schnitkey D, Merritt J, Kuhlman TE, Kuehn S. Environment determines evolutionary trajectory in a constrained phenotypic space. Elife. 2017 03 27; 6. PMID: 28346136; PMCID: PMC5441876.
      Citations: 37     Fields:    Translation:Cells
    17. Merritt J, Kuehn S. Quantitative high-throughput population dynamics in continuous-culture by automated microscopy. Sci Rep. 2016 09 12; 6:33173. PMID: 27616752; PMCID: PMC5018735.
      Citations: 3     Fields:    Translation:Cells
    18. Merritt J, Kuehn S. When communities collide. Elife. 2016 07 15; 5. PMID: 27420812; PMCID: PMC4946875.
      Citations:    Fields:    
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