 Databases, Protein
"Databases, Protein" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus,
MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure,
which enables searching at various levels of specificity.
Databases containing information about PROTEINS such as AMINO ACID SEQUENCE; PROTEIN CONFORMATION; and other properties.
| Descriptor ID |
D030562
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| MeSH Number(s) |
L01.470.750.750.325.710 L01.700.508.300.188.400.325.710
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| Concept/Terms |
Protein Sequence Databases- Protein Sequence Databases
- Database, Protein Sequence
- Databases, Protein Sequence
- Protein Sequence Database
- Sequence Database, Protein
- Sequence Databases, Protein
- Databases, Amino Acid Sequence
- Amino Acid Sequence Databases
Protein Structure Databases- Protein Structure Databases
- Database, Protein Structure
- Databases, Protein Structure
- Protein Structure Database
- Structure Database, Protein
- Structure Databases, Protein
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Below are MeSH descriptors whose meaning is more general than "Databases, Protein".
Below are MeSH descriptors whose meaning is more specific than "Databases, Protein".
This graph shows the total number of publications written about "Databases, Protein" by people in this website by year, and whether "Databases, Protein" was a major or minor topic of these publications.
To see the data from this visualization as text, click here.
| Year | Major Topic | Minor Topic | Total |
|---|
| 2001 | 0 | 2 | 2 | | 2002 | 1 | 0 | 1 | | 2003 | 0 | 1 | 1 | | 2004 | 1 | 0 | 1 | | 2005 | 0 | 2 | 2 | | 2006 | 2 | 4 | 6 | | 2007 | 1 | 1 | 2 | | 2008 | 1 | 1 | 2 | | 2009 | 2 | 5 | 7 | | 2010 | 1 | 2 | 3 | | 2011 | 0 | 4 | 4 | | 2012 | 1 | 4 | 5 | | 2013 | 2 | 1 | 3 | | 2014 | 0 | 3 | 3 | | 2016 | 0 | 1 | 1 | | 2017 | 1 | 0 | 1 | | 2019 | 0 | 2 | 2 | | 2021 | 0 | 1 | 1 |
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Below are the most recent publications written about "Databases, Protein" by people in Profiles.
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Park SJ, Lee J, Patel DS, Ma H, Lee HS, Jo S, Im W. Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank. Bioinformatics. 2017 Oct 01; 33(19):3051-3057.
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Jo S, Cheng X, Lee J, Kim S, Park SJ, Patel DS, Beaven AH, Lee KI, Rui H, Park S, Lee HS, Roux B, MacKerell AD, Klauda JB, Qi Y, Im W. CHARMM-GUI 10 years for biomolecular modeling and simulation. J Comput Chem. 2017 06 05; 38(15):1114-1124.
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Virtanen JJ, Sosnick TR, Freed KF. Ionic strength independence of charge distributions in solvation of biomolecules. J Chem Phys. 2014 Dec 14; 141(22):22D503.
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McGreevy R, Singharoy A, Li Q, Zhang J, Xu D, Perozo E, Schulten K. xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures. Acta Crystallogr D Biol Crystallogr. 2014 Sep; 70(Pt 9):2344-55.
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Qi Y, Cheng X, Han W, Jo S, Schulten K, Im W. CHARMM-GUI PACE CG Builder for solution, micelle, and bilayer coarse-grained simulations. J Chem Inf Model. 2014 Mar 24; 54(3):1003-9.
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Shakhsheer B, Anderson M, Khatib K, Tadoori L, Joshi L, Lisacek F, Hirschman L, Mullen E. SugarBind database (SugarBindDB): a resource of pathogen lectins and corresponding glycan targets. J Mol Recognit. 2013 Sep; 26(9):426-31.
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Parisien M, Wang X, Perdrizet G, Lamphear C, Fierke CA, Maheshwari KC, Wilde MJ, Sosnick TR, Pan T. Discovering RNA-protein interactome by using chemical context profiling of the RNA-protein interface. Cell Rep. 2013 May 30; 3(5):1703-13.
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Jo S, Lee HS, Skolnick J, Im W. Restricted N-glycan conformational space in the PDB and its implication in glycan structure modeling. PLoS Comput Biol. 2013; 9(3):e1002946.
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Zhang QC, Petrey D, Garzón JI, Deng L, Honig B. PrePPI: a structure-informed database of protein-protein interactions. Nucleic Acids Res. 2013 Jan; 41(Database issue):D828-33.
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Jo S, Im W. Glycan fragment database: a database of PDB-based glycan 3D structures. Nucleic Acids Res. 2013 Jan; 41(Database issue):D470-4.
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