The University of Chicago Header Logo

Connection

Chuan He to DNA Methylation

This is a "connection" page, showing publications Chuan He has written about DNA Methylation.
Connection Strength

6.680
  1. DMN-seq enriches DNA hypomethylated regions for biomarker discovery using 5-methylcytosine glycosylase. Genome Biol. 2026 Feb 11; 27(1).
    View in: PubMed
    Score: 0.657
  2. LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA. Genome Biol. 2024 06 14; 25(1):157.
    View in: PubMed
    Score: 0.585
  3. Sequencing of N6-methyl-deoxyadenosine at single-base resolution across the mammalian genome. Mol Cell. 2024 02 01; 84(3):596-610.e6.
    View in: PubMed
    Score: 0.568
  4. Mammalian DNA N6-methyladenosine: Challenges and new insights. Mol Cell. 2023 02 02; 83(3):343-351.
    View in: PubMed
    Score: 0.533
  5. LEAD-m6 A-seq for Locus-Specific Detection of N6 -Methyladenosine and Quantification of Differential Methylation. Angew Chem Int Ed Engl. 2021 01 11; 60(2):873-880.
    View in: PubMed
    Score: 0.456
  6. Abundant DNA 6mA methylation during early embryogenesis of zebrafish and pig. Nat Commun. 2016 10 07; 7:13052.
    View in: PubMed
    Score: 0.344
  7. A Highly Sensitive and Robust Method for Genome-wide 5hmC Profiling of Rare Cell Populations. Mol Cell. 2016 08 18; 63(4):711-719.
    View in: PubMed
    Score: 0.339
  8. Characterization of eukaryotic DNA N(6)-methyladenine by a highly sensitive restriction enzyme-assisted sequencing. Nat Commun. 2016 Apr 15; 7:11301.
    View in: PubMed
    Score: 0.332
  9. Decoding the transcriptome and DNA methylome of human primordial germ cells. Sci China Life Sci. 2015 Jul; 58(7):729-30.
    View in: PubMed
    Score: 0.313
  10. Detection of mismatched 5-hydroxymethyluracil in DNA by selective chemical labeling. Methods. 2015 Jan 15; 72:16-20.
    View in: PubMed
    Score: 0.301
  11. Potential functional roles of DNA demethylation intermediates. Trends Biochem Sci. 2013 Oct; 38(10):480-4.
    View in: PubMed
    Score: 0.276
  12. Ultra-mild bisulfite outperforms existing methods for 5-methylcytosine detection with low input DNA. Nat Commun. 2025 Nov 13; 16(1):9939.
    View in: PubMed
    Score: 0.161
  13. Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nat Biotechnol. 2024 Oct; 42(10):1559-1570.
    View in: PubMed
    Score: 0.142
  14. A human tissue map of 5-hydroxymethylcytosines exhibits tissue specificity through gene and enhancer modulation. Nat Commun. 2020 12 02; 11(1):6161.
    View in: PubMed
    Score: 0.115
  15. N6-Deoxyadenosine Methylation in Mammalian Mitochondrial DNA. Mol Cell. 2020 05 07; 78(3):382-395.e8.
    View in: PubMed
    Score: 0.109
  16. DNA 5-Methylcytosine-Specific Amplification and Sequencing. J Am Chem Soc. 2020 03 11; 142(10):4539-4543.
    View in: PubMed
    Score: 0.109
  17. 5-Hydroxymethylcytosine Profiles in Circulating Cell-Free DNA Associate with Disease Burden in Children with Neuroblastoma. Clin Cancer Res. 2020 03 15; 26(6):1309-1317.
    View in: PubMed
    Score: 0.107
  18. N6-methyldeoxyadenosine directs nucleosome positioning in Tetrahymena DNA. Genome Biol. 2018 11 19; 19(1):200.
    View in: PubMed
    Score: 0.099
  19. DNA cytosine hydroxymethylation levels are distinct among non-overlapping classes of peripheral blood leukocytes. J Immunol Methods. 2016 09; 436:1-15.
    View in: PubMed
    Score: 0.083
  20. Nucleic Acid Modifications in Regulation of Gene Expression. Cell Chem Biol. 2016 Jan 21; 23(1):74-85.
    View in: PubMed
    Score: 0.082
  21. Detecting hepatocellular carcinoma in blood. Cell Res. 2015 Dec; 25(12):1279-80.
    View in: PubMed
    Score: 0.081
  22. DNA N(6)-methyladenine: a new epigenetic mark in eukaryotes? Nat Rev Mol Cell Biol. 2015 Dec; 16(12):705-10.
    View in: PubMed
    Score: 0.080
  23. High-Resolution Mapping of N6-Methyladenosine in Transcriptome and Genome Using a Photo-Crosslinking-Assisted Strategy. Methods Enzymol. 2015; 560:161-85.
    View in: PubMed
    Score: 0.079
  24. Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics. Cell Res. 2015 Mar; 25(3):386-9.
    View in: PubMed
    Score: 0.076
  25. 5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation. Mol Cell. 2014 Oct 23; 56(2):286-297.
    View in: PubMed
    Score: 0.075
  26. Nucleic acid oxidation in DNA damage repair and epigenetics. Chem Rev. 2014 Apr 23; 114(8):4602-20.
    View in: PubMed
    Score: 0.072
  27. Hydroxymethylation at gene regulatory regions directs stem/early progenitor cell commitment during erythropoiesis. Cell Rep. 2014 Jan 16; 6(1):231-244.
    View in: PubMed
    Score: 0.071
  28. Nonenzymatic labeling of 5-hydroxymethylcytosine in nanopore sequencing. Chembiochem. 2013 Jul 22; 14(11):1289-90.
    View in: PubMed
    Score: 0.068
  29. Tet-mediated covalent labelling of 5-methylcytosine for its genome-wide detection and sequencing. Nat Commun. 2013; 4:1517.
    View in: PubMed
    Score: 0.066
  30. Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA. Nat Chem Biol. 2012 Feb 12; 8(4):328-30.
    View in: PubMed
    Score: 0.062
  31. Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked protein-DNA system. Nucleic Acids Res. 2010 Jul; 38(13):4415-25.
    View in: PubMed
    Score: 0.054
  32. A non-heme iron-mediated chemical demethylation in DNA and RNA. Acc Chem Res. 2009 Apr 21; 42(4):519-29.
    View in: PubMed
    Score: 0.051
  33. Analysis of genome-wide 5-hydroxymethylation of blood samples stored in different anticoagulants: opportunities for the expansion of clinical resources for epigenetic research. Epigenetics. 2023 12; 18(1):2271692.
    View in: PubMed
    Score: 0.035
  34. Genome-Wide Mapping Implicates 5-Hydroxymethylcytosines in Diabetes Mellitus and Alzheimer's Disease. J Alzheimers Dis. 2023; 93(3):1135-1151.
    View in: PubMed
    Score: 0.033
  35. m6A mRNA demethylase FTO regulates melanoma tumorigenicity and response to anti-PD-1 blockade. Nat Commun. 2019 06 25; 10(1):2782.
    View in: PubMed
    Score: 0.026
  36. ALKBHs-facilitated RNA modifications and de-modifications. DNA Repair (Amst). 2016 08; 44:87-91.
    View in: PubMed
    Score: 0.021
  37. Blockade of miR-150 maturation by MLL-fusion/MYC/LIN-28 is required for MLL-associated leukemia. Cancer Cell. 2012 Oct 16; 22(4):524-35.
    View in: PubMed
    Score: 0.016
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.