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Daniel Matute

TitlePostdoctoral Scholar
InstitutionUniversity of Chicago
DepartmentHuman Genetics
AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Suvorov A, Kim BY, Wang J, Armstrong EE, Peede D, D'Agostino ERR, Price DK, Waddell P, Lang M, Courtier-Orgogozo V, David JR, Petrov D, Matute DR, Schrider DR, Comeault AA. Widespread introgression across a phylogeny of 155 Drosophila genomes. Curr Biol. 2021 Nov 12. PMID: 34788634.
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    2. Almeida-Silva F, de Melo Teixeira M, Matute DR, de Faria Ferreira M, Barker BM, Almeida-Paes R, Guimarães AJ, Zancopé-Oliveira RM. Genomic Diversity Analysis Reveals a Strong Population Structure in Histoplasma capsulatum LAmA (Histoplasma suramericanum). J Fungi (Basel). 2021 Oct 15; 7(10). PMID: 34682286.
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    3. Comeault AA, Kautt AF, Matute DR. Genomic signatures of admixture and selection are shared among populations of Zaprionus indianus across the western hemisphere. Mol Ecol. 2021 Dec; 30(23):6193-6210. PMID: 34233050.
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    4. Kim BY, Wang JR, Miller DE, Barmina O, Delaney E, Thompson A, Comeault AA, Peede D, D'Agostino ER, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong EE, Zych M, Ogawa Y, Stamenkovic-Radak M, Jelic M, Veselinovic MS, Tanaskovic M, Eric P, Gao JJ, Katoh TK, Toda MJ, Watabe H, Watada M, Davis JS, Moyle LC, Manoli G, Bertolini E, Koštál V, Hawley RS, Takahashi A, Jones CD, Price DK, Whiteman N, Kopp A, Matute DR, Petrov DA. Highly contiguous assemblies of 101 drosophilid genomes. Elife. 2021 07 19; 10. PMID: 34279216.
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    5. de Melo Teixeira M, Lang BF, Matute DR, Stajich JE, Barker B. The mitochondrial genomes of the human pathogens Coccidioides immitis and C. posadasii. G3 (Bethesda). 2021 Apr 19. PMID: 33871031.
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    6. Matute DR, Cooper BS. Comparative studies on speciation: 30 years since Coyne and Orr. Evolution. 2021 04; 75(4):764-778. PMID: 33491225.
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    7. Rushworth CA, Baucom RS, Blackman BK, Neiman M, Orive ME, Sethuraman A, Ware J, Matute DR. Who are we now? A demographic assessment of three evolution societies. Evolution. 2021 02; 75(2):208-218. PMID: 33433921.
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    8. Comeault AA, Matute DR. Temperature-Dependent Competitive Outcomes between the Fruit Flies Drosophila santomea and Drosophila yakuba. Am Nat. 2021 03; 197(3):312-323. PMID: 33625962.
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    9. Bagagli E, Matute DR, Garces HG, Tenório BG, Garces AG, Alves LGB, Yamauchi DH, Hrycyk MF, Barker BM, Teixeira MM. Paracoccidioides brasiliensis Isolated from Nine-Banded Armadillos (Dasypus novemcinctus) Reveal Population Structure and Admixture in the Amazon Basin. J Fungi (Basel). 2021 Jan 15; 7(1). PMID: 33467393.
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    10. Mavengere H, Mattox K, Teixeira MM, Sepúlveda VE, Gomez OM, Hernandez O, McEwen J, Matute DR. Paracoccidioides Genomes Reflect High Levels of Species Divergence and Little Interspecific Gene Flow. mBio. 2020 12 22; 11(6). PMID: 33443110.
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    11. Eudes Filho J, Santos IBD, Reis CMS, Patané JSL, Paredes V, Bernardes JPRA, Poggiani SDSC, Castro TCB, Gomez OM, Pereira SA, Schubach EYP, Gomes KP, Mavengere H, Alves LGB, Lucas J, Paes HC, Albuquerque P, Cruz LM, McEwen JG, Stajich JE, Almeida-Paes R, Zancopé-Oliveira RM, Matute DR, Barker BM, Felipe MSS, Teixeira MM, Nicola AM. A novel Sporothrix brasiliensis genomic variant in Midwestern Brazil: evidence for an older and wider sporotrichosis epidemic. Emerg Microbes Infect. 2020 Dec; 9(1):2515-2525. PMID: 33155518.
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    12. Sprengelmeyer QD, Mansourian S, Lange JD, Matute DR, Cooper BS, Jirle EV, Stensmyr MC, Pool JE. Corrigendum to: Recurrent Collection of Drosophila melanogaster from Wild African Environments and Genomic Insights into Species History. Mol Biol Evol. 2020 09 01; 37(9):2775. PMID: 32594182.
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    13. Coughlan JM, Matute DR. The importance of intrinsic postzygotic barriers throughout the speciation process. Philos Trans R Soc Lond B Biol Sci. 2020 08 31; 375(1806):20190533. PMID: 32654642.
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    14. Comeault AA, Wang J, Tittes S, Isbell K, Ingley S, Hurlbert AH, Matute DR. Genetic Diversity and Thermal Performance in Invasive and Native Populations of African Fig Flies. Mol Biol Evol. 2020 07 01; 37(7):1893-1906. PMID: 32109281.
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    15. Hague MTJ, Mavengere H, Matute DR, Cooper BS. Environmental and Genetic Contributions to Imperfect wMel-Like Wolbachia Transmission and Frequency Variation. Genetics. 2020 08; 215(4):1117-1132. PMID: 32546497.
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    16. Serrato-Capuchina A, Wang J, Earley E, Peede D, Isbell K, Matute DR. Paternally Inherited P-Element Copy Number Affects the Magnitude of Hybrid Dysgenesis in Drosophila simulans and D. melanogaster. Genome Biol Evol. 2020 06 01; 12(6):808-826. PMID: 32339225.
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    17. Dagilis AJ, Matute DR. Incompatibilities between emerging species. Science. 2020 05 15; 368(6492):710-711. PMID: 32409461.
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    18. Teixeira MM, Cattana ME, Matute DR, Muñoz JF, Arechavala A, Isbell K, Schipper R, Santiso G, Tracogna F, Sosa MLÁ, Cech N, Alvarado P, Barreto L, Chacón Y, Ortellado J, Lima CM, Chang MR, Niño-Vega G, Yasuda MAS, Felipe MSS, Negroni R, Cuomo CA, Barker B, Giusiano G. Genomic diversity of the human pathogen Paracoccidioides across the South American continent. Fungal Genet Biol. 2020 07; 140:103395. PMID: 32325168.
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    19. Sprengelmeyer QD, Mansourian S, Lange JD, Matute DR, Cooper BS, Jirle EV, Stensmyr MC, Pool JE. Recurrent Collection of Drosophila melanogaster from Wild African Environments and Genomic Insights into Species History. Mol Biol Evol. 2020 03 01; 37(3):627-638. PMID: 31730190.
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    20. Matute DR, Comeault AA, Earley E, Serrato-Capuchina A, Peede D, Monroy-Eklund A, Huang W, Jones CD, Mackay TFC, Coyne JA. Rapid and Predictable Evolution of Admixed Populations Between Two Drosophila Species Pairs. Genetics. 2020 Jan 01; 214(1):211-230. PMID: 33954653.
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    21. Teixeira MM, Alvarado P, Roe CC, Thompson GR, Patané JSL, Sahl JW, Keim P, Galgiani JN, Litvintseva AP, Matute DR, Barker BM. Population Structure and Genetic Diversity among Isolates of Coccidioides posadasii in Venezuela and Surrounding Regions. mBio. 2019 11 26; 10(6). PMID: 31772050.
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    22. Matute DR, Comeault AA, Earley E, Serrato-Capuchina A, Peede D, Monroy-Eklund A, Huang W, Jones CD, Mackay TFC, Coyne JA. Rapid and Predictable Evolution of Admixed Populations Between Two Drosophila Species Pairs. Genetics. 2020 01; 214(1):211-230. PMID: 31767631.
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    23. Cooper BS, Vanderpool D, Conner WR, Matute DR, Turelli M. Wolbachia Acquisition by Drosophila yakuba-Clade Hosts and Transfer of Incompatibility Loci Between Distantly Related Wolbachia. Genetics. 2019 Aug 01; 212(4):1399-1419. PMID: 33956103.
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    24. Matute DR, Sepúlveda VE. Fungal species boundaries in the genomics era. Fungal Genet Biol. 2019 10; 131:103249. PMID: 31279976.
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    25. Cooper BS, Vanderpool D, Conner WR, Matute DR, Turelli M. Wolbachia Acquisition by Drosophila yakuba-Clade Hosts and Transfer of Incompatibility Loci Between Distantly Related Wolbachia. Genetics. 2019 08; 212(4):1399-1419. PMID: 31227544.
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    26. Coughlan JM, Matute DR. Speciation: On the Scent of Mate Discrimination Genes. Curr Biol. 2018 12 17; 28(24):R1389-R1391. PMID: 30562530.
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    27. Maxwell CS, Mattox K, Turissini DA, Teixeira MM, Barker BM, Matute DR. Gene exchange between two divergent species of the fungal human pathogen, Coccidioides. Evolution. 2019 01; 73(1):42-58. PMID: 30414183.
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    28. Mideros MF, Turissini DA, Guayazán N, Ibarra-Avila H, Danies G, Cárdenas M, Myers K, Tabima J, Goss EM, Bernal A, Lagos LE, Grajales A, Gonzalez LN, Cooke DEL, Fry WE, Grünwald N, Matute DR, Restrepo S. Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia. Persoonia. 2018 Dec; 41:39-55. PMID: 30728598.
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    29. Nagy O, Nuez I, Savisaar R, Peluffo AE, Yassin A, Lang M, Stern DL, Matute DR, David JR, Courtier-Orgogozo V. Correlated Evolution of Two Copulatory Organs via a Single cis-Regulatory Nucleotide Change. Curr Biol. 2018 11 05; 28(21):3450-3457.e13. PMID: 30344115.
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    30. Comeault AA, Matute DR. Genetic divergence and the number of hybridizing species affect the path to homoploid hybrid speciation. Proc Natl Acad Sci U S A. 2018 09 25; 115(39):9761-9766. PMID: 30209213.
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    31. Cooper BS, Sedghifar A, Nash WT, Comeault AA, Matute DR. A Maladaptive Combination of Traits Contributes to the Maintenance of a Drosophila Hybrid Zone. Curr Biol. 2018 09 24; 28(18):2940-2947.e6. PMID: 30174184.
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    32. Maxwell CS, Sepulveda VE, Turissini DA, Goldman WE, Matute DR. Recent admixture between species of the fungal pathogen Histoplasma. Evol Lett. 2018 Jun; 2(3):210-220. PMID: 30283677.
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    33. Serrato-Capuchina A, Matute DR. The Role of Transposable Elements in Speciation. Genes (Basel). 2018 May 15; 9(5). PMID: 29762547.
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    34. Schrider DR, Ayroles J, Matute DR, Kern AD. Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia. PLoS Genet. 2018 04; 14(4):e1007341. PMID: 29684059.
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    35. Brandvain Y, Matute DR. When genes move, genomes collide. PLoS Genet. 2018 04; 14(4):e1007286. PMID: 29649214.
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    36. Turissini DA, McGirr JA, Patel SS, David JR, Matute DR. The Rate of Evolution of Postmating-Prezygotic Reproductive Isolation in Drosophila. Mol Biol Evol. 2018 02 01; 35(2):312-334. PMID: 29048573.
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    37. Turissini DA, Matute DR. Fine scale mapping of genomic introgressions within the Drosophila yakuba clade. PLoS Genet. 2017 Sep; 13(9):e1006971. PMID: 28873409.
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    38. Turissini DA, Gomez OM, Teixeira MM, McEwen JG, Matute DR. Species boundaries in the human pathogen Paracoccidioides. Fungal Genet Biol. 2017 Sep; 106:9-25. PMID: 28602831.
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    39. Comeault AA, Serrato-Capuchina A, Turissini DA, McLaughlin PJ, David JR, Matute DR. A nonrandom subset of olfactory genes is associated with host preference in the fruit fly Drosophila orena. Evol Lett. 2017 Jun; 1(2):73-85. PMID: 30283640.
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    40. Turissini DA, Comeault AA, Liu G, Lee YC, Matute DR. The ability of Drosophila hybrids to locate food declines with parental divergence. Evolution. 2017 04; 71(4):960-973. PMID: 28085186.
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    41. Miller CJ, Matute DR. The Effect of Temperature on Drosophila Hybrid Fitness. G3 (Bethesda). 2017 02 09; 7(2):377-385. PMID: 27913636.
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    42. Cooper BS, Ginsberg PS, Turelli M, Matute DR. Wolbachia in the Drosophila yakuba Complex: Pervasive Frequency Variation and Weak Cytoplasmic Incompatibility, but No Apparent Effect on Reproductive Isolation. Genetics. 2017 01; 205(1):333-351. PMID: 27821433.
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    43. Miller CJJ, Matute DR. Evolutionary Genetics: Reuse, Recycle, Converge. Curr Biol. 2016 09 26; 26(18):R838-R840. PMID: 27676299.
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    44. Comeault AA, Venkat A, Matute DR. Correlated evolution of male and female reproductive traits drive a cascading effect of reinforcement in Drosophila yakuba. Proc Biol Sci. 2016 Jul 27; 283(1835). PMID: 27440664.
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    45. Comeault AA, Matute DR. Reinforcement's incidental effects on reproductive isolation between conspecifics. Curr Zool. 2016 Apr; 62(2):135-143. PMID: 29491901.
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    46. Matute DR, Gavin-Smyth J. Correction: Fine Mapping of Dominant X-Linked Incompatibility Alleles in Drosophila Hybrids. PLoS Genet. 2015 Oct; 11(10):e1005558. PMID: 26444642.
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    47. Turissini DA, Liu G, David JR, Matute DR. The evolution of reproductive isolation in the Drosophila yakuba complex of species. J Evol Biol. 2015 Mar; 28(3):557-75. PMID: 25611516.
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    48. Kaucikas M, Fitzpatrick A, Bryan E, Struve A, Henning R, Kosheleva I, Srajer V, Groenhof G, Van Thor JJ. Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa. Proteins. 2015 Mar; 83(3):397-402. PMID: 25616143.
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    49. Kaucikas M, Fitzpatrick A, Bryan E, Struve A, Henning R, Kosheleva I, Srajer V, Groenhof G, Van Thor JJ. Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa. Proteins. 2015 Mar; 83(3):397-402. PMID: 29208741.
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    50. Kaucikas M, Fitzpatrick A, Bryan E, Struve A, Henning R, Kosheleva I, Srajer V, Groenhof G, Van Thor JJ. Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa. Proteins. 2015 Mar; 83(3):397-402. PMID: 18820744.
      View in: PubMed
    51. Kaucikas M, Fitzpatrick A, Bryan E, Struve A, Henning R, Kosheleva I, Srajer V, Groenhof G, Van Thor JJ. Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa. Proteins. 2015 Mar; 83(3):397-402. PMID: 34043234.
      View in: PubMed
    52. Kaucikas M, Fitzpatrick A, Bryan E, Struve A, Henning R, Kosheleva I, Srajer V, Groenhof G, Van Thor JJ. Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa. Proteins. 2015 Mar; 83(3):397-402. PMID: 34463356.
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    53. Matute DR, Ortiz-Barrientos D. Speciation: the strength of natural selection driving reinforcement. Curr Biol. 2014 Oct 06; 24(19):R955-7. PMID: 25291635.
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    54. Matute DR. The magnitude of behavioral isolation is affected by characteristics of the mating community. Ecol Evol. 2014 Jul; 4(14):2945-56. PMID: 25165530.
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    55. Matute DR, Gavin-Smyth J, Liu G. Variable post-zygotic isolation in Drosophila melanogaster/D. simulans hybrids. J Evol Biol. 2014 Aug; 27(8):1691-705. PMID: 24920013.
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    56. Restrepo S, Tabima JF, Mideros MF, Grünwald NJ, Matute DR. Speciation in fungal and oomycete plant pathogens. Annu Rev Phytopathol. 2014; 52:289-316. PMID: 24906125.
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    57. Matute DR, Ayroles JF. Hybridization occurs between Drosophila simulans and D. sechellia in the Seychelles archipelago. J Evol Biol. 2014 Jun; 27(6):1057-68. PMID: 24773151.
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    58. Matute DR, Gavin-Smyth J. Fine mapping of dominant X-linked incompatibility alleles in Drosophila hybrids. PLoS Genet. 2014 Apr; 10(4):e1004270. PMID: 24743238.
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    59. Matute DR. The role of founder effects on the evolution of reproductive isolation. J Evol Biol. 2013 Nov; 26(11):2299-311. PMID: 24118666.
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    60. Rabosky DL, Matute DR. Macroevolutionary speciation rates are decoupled from the evolution of intrinsic reproductive isolation in Drosophila and birds. Proc Natl Acad Sci U S A. 2013 Sep 17; 110(38):15354-9. PMID: 24003144.
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    61. Matute DR, Harris A. The influence of abdominal pigmentation on desiccation and ultraviolet resistance in two species of Drosophila. Evolution. 2013 Aug; 67(8):2451-60. PMID: 23888866.
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    62. Gavin-Smyth J, Matute DR. Embryonic lethality leads to hybrid male inviability in hybrids between Drosophila melanogaster and D. santomea. Ecol Evol. 2013 Jun; 3(6):1580-9. PMID: 23789069.
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    63. Leffler EM, Bullaughey K, Matute DR, Meyer WK, Ségurel L, Venkat A, Andolfatto P, Przeworski M. Revisiting an old riddle: what determines genetic diversity levels within species? PLoS Biol. 2012; 10(9):e1001388. PMID: 22984349.
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    64. Matute DR. Reinforcement can overcome gene flow during speciation in Drosophila. Curr Biol. 2010 Dec 21; 20(24):2229-33. PMID: 21129972.
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    65. Matute DR, Butler IA, Turissini DA, Coyne JA. A test of the snowball theory for the rate of evolution of hybrid incompatibilities. Science. 2010 Sep 17; 329(5998):1518-21. PMID: 20847270.
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    66. Matute DR. Reinforcement of gametic isolation in Drosophila. PLoS Biol. 2010 Mar 23; 8(3):e1000341. PMID: 20351771.
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    67. Matute DR, Butler IA, Coyne JA. Little effect of the tan locus on pigmentation in female hybrids between Drosophila santomea and D. melanogaster. Cell. 2009 Dec 11; 139(6):1180-8. PMID: 20005810.
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    68. Matute DR, Coyne JA. Intrinsic reproductive isolation between two sister species of Drosophila. Evolution. 2010 Apr 01; 64(4):903-20. PMID: 19891626.
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    69. Matute DR, Novak CJ, Coyne JA. Temperature-based extrinsic reproductive isolation in two species of Drosophila. Evolution. 2009 Mar; 63(3):595-612. PMID: 19087181.
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    70. Matute DR, Torres IP, Salgado-Salazar C, Restrepo A, McEwen JG. Background selection at the chitin synthase II (chs2) locus in Paracoccidioides brasiliensis species complex. Fungal Genet Biol. 2007 May; 44(5):357-67. PMID: 17331762.
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    71. Almeida AJ, Matute DR, Carmona JA, Martins M, Torres I, McEwen JG, Restrepo A, Leão C, Ludovico P, Rodrigues F. Genome size and ploidy of Paracoccidioides brasiliensis reveals a haploid DNA content: flow cytometry and GP43 sequence analysis. Fungal Genet Biol. 2007 Jan; 44(1):25-31. PMID: 16879998.
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    72. Matute DR, Sepulveda VE, Quesada LM, Goldman GH, Taylor JW, Restrepo A, McEwen JG. Microsatellite analysis of three phylogenetic species of Paracoccidioides brasiliensis. J Clin Microbiol. 2006 Jun; 44(6):2153-7. PMID: 16757613.
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    73. Matute DR, Barreto-Hernandez E, Falquet L. Hunting for insect-specific protein domains. In Silico Biol. 2006; 6(1-2):35-42. PMID: 16789911.
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    74. Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Niño-Vega G, Taylor JW. Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol. 2006 Jan; 23(1):65-73. PMID: 16151188.
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    75. Corredor GG, Peralta LA, Castaño JH, Zuluaga JS, Henao B, Arango M, Tabares AM, Matute DR, McEwen JG, Restrepo A. The naked-tailed armadillo Cabassous centralis (Miller 1899): a new host to Paracoccidioides brasiliensis. Molecular identification of the isolate. Med Mycol. 2005 May; 43(3):275-80. PMID: 16010854.
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