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Aarti Venkat

TitleAssistant Professor
InstitutionUniversity of Chicago
DepartmentMedicine-Computational Biomedicine and Biomedical Data Science
AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Hernandez KM, Venkat A, Elbers DC, Bihn JR, Brophy MT, Do NV, La J, Liu Q, Prokhorenkov A, Metoki-Shlubsky N, Sung FC, Paller CJ, Fillmore NR, Grossman RL, Hernandez KM, Venkat A, Elbers DC, Bihn JR, Brophy MT, Do NV, La J, Liu Q, Prokhorenkov A, Metoki-Shlubsky N, Sung FC, Paller CJ, Fillmore NR, Grossman RL. Prostate cancer patient stratification by molecular signatures in the Veterans Precision Oncology Data Commons. Cold Spring Harb Mol Case Stud. 2023 Dec; 9(4). PMID: 38050021; PMCID: PMC10815278.
      Citations:    Fields:    Translation:Humans
    2. Cook DE, Venkat A, Yelizarov D, Pouliot Y, Chang PC, Carroll A, De La Vega FM. A deep-learning-based RNA-seq germline variant caller. Bioinform Adv. 2023; 3(1):vbad062. PMID: 37416509; PMCID: PMC10320079.
      Citations: 1     
    3. Venkat A, Hahn MW, Thornton JW. Multinucleotide mutations cause false inferences of lineage-specific positive selection. Nat Ecol Evol. 2018 08; 2(8):1280-1288. PMID: 29967485; PMCID: PMC6093625.
      Citations: 59     Fields:    Translation:Animals
    4. Comeault AA, Venkat A, Matute DR. Correlated evolution of male and female reproductive traits drive a cascading effect of reinforcement in Drosophila yakuba. Proc Biol Sci. 2016 Jul 27; 283(1835). PMID: 27440664; PMCID: PMC4971202.
      Citations: 18     Fields:    Translation:Animals
    5. Meyer WK, Venkat A, Kermany AR, van de Geijn B, Zhang S, Przeworski M. Evolutionary history inferred from the de novo assembly of a nonmodel organism, the blue-eyed black lemur. Mol Ecol. 2015 Sep; 24(17):4392-405. PMID: 26198179; PMCID: PMC4557055.
      Citations: 11     Fields:    Translation:Animals
    6. Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J, Robinson GE, Zhang G, Pinheiro DG, Nunes FM, Soares MP, Tanaka ÉD, Simões ZL, Hartfelder K. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science. 2015 Jun 05; 348(6239):1139-43. PMID: 25977371; PMCID: PMC5471836.
      Citations: 127     Fields:    Translation:AnimalsCells
    7. Sadd BM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, Bornberg-Bauer E, Klasberg S, Bennett AK, Hoff K, Mariotti M, Munoz-Torres M, Murphy T, Santesmasses D, Amdam GV, Beckers M, Beye M, Biewer M, Blaxter ML, Bourke AF, Brown MJ, Cameron R, Cappelle K, Carolan JC, Christiaens O, Ciborowski KL, Clarke DF, Colgan TJ, Collins DH, Cridge AG, Dalmay T, Dreier S, Duncan E, Erler S, Evans J, Flores K, Fuchikawa T, Gempe T, Hauser F, Helbing S, Irvine F, Jermiin LS, Johnson CE, Johnson RM, Jones AK, Kadowaki T, Kidner JH, Koch V, Kraus FB, Lattorff HM, Leask M, Lockett GA, Mallon EB, Meeus I, Moritz RF, Nair A, Nissen I, Niu J, Oakeshott JG, Osborne A, Otte M, Rueppell O, Schulte C, Swevers L, Winnebeck EC, Wolschin F, Yu N, Zdobnov EM, Aqrawi PK, Blankenburg KP, Coyle M, Francisco L, Hernandez AG, Holder M, Hudson ME, Jackson L, Jayaseelan J, Joshi V, Kovar C, Lee SL, Mata R, Mathew T, Newsham IF, Ngo R, Okwuonu G, Pham C, Pu LL, Saada N, Santibanez J, Simmons D, Thornton R, Venkat A, Walden KK, Wu YQ, Debyser G, Devreese B, Asher C, Blommaert J, Chipman AD, Chittka L, Fouks B, Liu J, O'Neill MP, Sumner S, Puiu D, Qu J, Salzberg SL, Scherer SE, Muzny DM, Richards S, Robinson GE, Gibbs RA, Worley KC, Barribeau SM, Gadau J, Câmara F, Guigó R, Bitondi MM, Buechel SD, du Plessis L, Falcon T, Freitas FC, Hartfelder K, Humann FC, Köhler A, Antonio DS, Marxer M, Näpflin K, Nunes FM, Pinheiro DG, Rossié N, Santos CG, Schmid-Hempel R, Schmitt BD, Simões ZL, Soares MP, Schmid-Hempel P. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biol. 2015 Apr 24; 16:76. PMID: 25908251; PMCID: PMC4414376.
      Citations: 150     Fields:    Translation:AnimalsCells
    8. Thompson EE, Lovstad J, Venkat A, Margulis SW, Moyse J, Ross S, Gamble K, Sella G, Ober C, Przeworski M, Ségurel L, Flutre T. The ABO blood group is a trans-species polymorphism in primates. Proc Natl Acad Sci U S A. 2012 Nov 06; 109(45):18493-8. PMID: 23091028; PMCID: PMC3494955.
      Citations: 66     Fields:    Translation:Animals
    9. Leffler EM, Bullaughey K, Matute DR, Meyer WK, Venkat A, Andolfatto P, Przeworski M, Ségurel L. Revisiting an old riddle: what determines genetic diversity levels within species? PLoS Biol. 2012; 10(9):e1001388. PMID: 22984349; PMCID: PMC3439417.
      Citations: 212     Fields:    Translation:AnimalsCells
    10. Auton A, Fledel-Alon A, Pfeifer S, Venn O, Street T, Leffler EM, Bowden R, Aneas I, Broxholme J, Humburg P, Iqbal Z, Lunter G, Maller J, Hernandez RD, Melton C, Venkat A, Nobrega MA, Bontrop R, Myers S, Donnelly P, Przeworski M, McVean G, Ségurel L. A fine-scale chimpanzee genetic map from population sequencing. Science. 2012 Apr 13; 336(6078):193-8. PMID: 22422862; PMCID: PMC3532813.
      Citations: 176     Fields:    Translation:HumansAnimalsCells
    11. Woodard SH, Fischman BJ, Venkat A, Hudson ME, Varala K, Cameron SA, Clark AG, Robinson GE. Genes involved in convergent evolution of eusociality in bees. Proc Natl Acad Sci U S A. 2011 May 03; 108(18):7472-7. PMID: 21482769; PMCID: PMC3088614.
      Citations: 83     Fields:    Translation:AnimalsCells
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