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Uzma Siddiqui

TitleAssociate Professor
InstitutionUniversity of Chicago
DepartmentMedicine-Gastroenterology
AddressChicago IL 60637
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    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Smith MS, Cash B, Konda V, Trindade AJ, Gordon S, DeMeester S, Joshi V, Diehl D, Ganguly E, Mashimo H, Singh S, Jobe B, McKinley M, Wallace M, Komatsu Y, Thakkar S, Schnoll-Sussman F, Sharaiha R, Kahaleh M, Tarnasky P, Wolfsen H, Hawes R, Lipham J, Khara H, Pleskow D, Navaneethan U, Kedia P, Hasan M, Sethi A, Samarasena J, Siddiqui UD, Gress F, Rodriguez R, Lee C, Gonda T, Waxman I, Hyder S, Poneros J, Sharzehi K, Di Palma JA, Sejpal DV, Oh D, Hagen J, Rothstein R, Sawhney M, Berzin T, Malik Z, Chang K. Volumetric laser endomicroscopy and its application to Barrett's esophagus: results from a 1,000 patient registry. Dis Esophagus. 2019 Nov 13; 32(9). PMID: 31037293.
      View in: PubMed
    2. Rabinowitz LG, Anandasabapathy S, Sethi A, Siddiqui UD, Wallace MB, Kim MK. Addressing gender in gastroenterology: opportunities for change. Gastrointest Endosc. 2019 Sep 06. PMID: 31499044.
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    3. Shamah SP, Chapman CG, Haider H, Liao C, Waxman I, Siddiqui UD. Partially Covered Versus Uncovered Self-Expandable Metal Stents: Coating Nor Diameter Affect Clinical Outcomes. Dig Dis Sci. 2019 Sep; 64(9):2631-2637. PMID: 31041643.
      View in: PubMed
    4. Smith ZL, Park KH, Llano EM, Donboli K, Fayad L, Han S, Kang L, Simril RT, Patel R, Hollander T, Rogers MC, Elmunzer BJ, Siddiqui UD, Aadam AA, Mullady DK, Lang GD, Das KK, Jamil LH, Lo SK, Gaddam S, Chapman CG, Keswani RN, Wani S, Cote GA, Kumbhari V, Kushnir VM. Outcomes of endoscopic treatment of leaks and fistulae after sleeve gastrectomy: results from a large multicenter U.S. cohort. Surg Obes Relat Dis. 2019 Jun; 15(6):850-855. PMID: 31122826.
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    5. Stier MW, Lodhia N, Jacobs J, Nozicka D, Kavitt R, Siddiqui U, Waxman I, Konda VJ. Perceptions of risk and therapy among patients with Barrett's esophagus: a patient survey study. Dis Esophagus. 2018 Apr 01; 31(4). PMID: 29036278.
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    6. Tomizawa Y, Konda VJA, Coronel E, Chapman CG, Siddiqui UD. Efficacy, Durability, and Safety of Complete Endoscopic Mucosal Resection of Barrett Esophagus: A Systematic Review and Meta-Analysis. J Clin Gastroenterol. 2018 03; 52(3):210-216. PMID: 28134635.
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    7. Siddiqui UD, Levy MJ. EUS-Guided Transluminal Interventions. Gastroenterology. 2018 May; 154(7):1911-1924. PMID: 29458153.
      View in: PubMed
    8. Arner DM, Corning BE, Ahmed AM, Ho HC, Weinbaum BJ, Siddiqui U, Aslanian H, Adams RB, Bauer TW, Wang AY, Shami VM, Sauer BG. Molecular analysis of pancreatic cyst fluid changes clinical management. Endosc Ultrasound. 2018 Jan-Feb; 7(1):29-33. PMID: 29451166.
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    9. Coronel E, Chapman CG, Matthews J, Siddiqui UD. Endoscopic ultrasound-guided gastroenterostomy for the treatment of gastroduodenal obstruction in severe chronic pancreatitis. Endoscopy. 2018 03; 50(3):285-287. PMID: 29245160.
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    10. Stier MW, Chapman CG, Kreitman A, Hart JA, Xiao SY, Siddiqui UD, Waxman I. Dissection-enabled scaffold-assisted resection (DeSCAR): a novel technique for resection of residual or non-lifting GI neoplasia of the colon (with video). Gastrointest Endosc. 2018 Mar; 87(3):843-851. PMID: 29158178.
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    11. Pectasides E, Stachler MD, Derks S, Liu Y, Maron S, Islam M, Alpert L, Kwak H, Kindler H, Polite B, Sharma MR, Allen K, O'Day E, Lomnicki S, Maranto M, Kanteti R, Fitzpatrick C, Weber C, Setia N, Xiao SY, Hart J, Nagy RJ, Kim KM, Choi MG, Min BH, Nason KS, O'Keefe L, Watanabe M, Baba H, Lanman R, Agoston AT, Oh DJ, Dunford A, Thorner AR, Ducar MD, Wollison BM, Coleman HA, Ji Y, Posner MC, Roggin K, Turaga K, Chang P, Hogarth K, Siddiqui U, Gelrud A, Ha G, Freeman SS, Rhoades J, Reed S, Gydush G, Rotem D, Davison J, Imamura Y, Adalsteinsson V, Lee J, Bass AJ, Catenacci DV. Genomic Heterogeneity as a Barrier to Precision Medicine in Gastroesophageal Adenocarcinoma. Cancer Discov. 2018 01; 8(1):37-48. PMID: 28978556.
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    12. Gupta N, Konda V, Siddiqui UD. Gastric cardia lesion with abnormal volumetric laser endomicroscopy imaging result. Gastrointest Endosc. 2018 02; 87(2):610-612. PMID: 28803742.
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    13. Gupta N, Siddiqui U, Waxman I, Chapman C, Koons A, Valuckaite V, Xiao SY, Setia N, Hart J, Konda V. Use of volumetric laser endomicroscopy for dysplasia detection at the gastroesophageal junction and gastric cardia. World J Gastrointest Endosc. 2017 Jul 16; 9(7):319-326. PMID: 28744344.
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    14. Coronel E, Aronsohn A, Gelrud A, Siddiqui UD. The incredible shrinking waistline: lumen-apposing metal stent treatment of massive ascites. VideoGIE. 2017 Aug; 2(8):197-198. PMID: 29905289.
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    15. Chapman CG, Siddiqui UD, Manzano M, Konda VJ, Murillo C, Landon EM, Waxman I. Risk of infection transmission in curvilinear array echoendoscopes: results of a prospective reprocessing and culture registry. Gastrointest Endosc. 2017 Feb; 85(2):390-397.e1. PMID: 27478029.
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    16. Sharaiha RZ, Tyberg A, Khashab MA, Kumta NA, Karia K, Nieto J, Siddiqui UD, Waxman I, Joshi V, Benias PC, Darwin P, DiMaio CJ, Mulder CJ, Friedland S, Forcione DG, Sejpal DV, Gonda TA, Gress FG, Gaidhane M, Koons A, DeFilippis EM, Salgado S, Weaver KR, Poneros JM, Sethi A, Ho S, Kumbhari V, Singh VK, Tieu AH, Parra V, Likhitsup A, Womeldorph C, Casey B, Jonnalagadda SS, Desai AP, Carr-Locke DL, Kahaleh M, Siddiqui AA. Endoscopic Therapy With Lumen-apposing Metal Stents Is Safe and Effective for Patients With Pancreatic Walled-off Necrosis. Clin Gastroenterol Hepatol. 2016 12; 14(12):1797-1803. PMID: 27189914.
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    17. Singh A, Siddiqui UD, Konda VJ, Whitcomb E, Hart J, Xiao SY, Ruiz MG, Koons A, Waxman I. Safety and efficacy of EMR for sporadic, nonampullary duodenal adenomas: a single U.S. center experience (with video). Gastrointest Endosc. 2016 Oct; 84(4):700-8. PMID: 27063918.
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    18. Chapman CG, Waxman I, Siddiqui UD. Endoscopic Ultrasound (EUS)-Guided Pancreatic Duct Drainage: The Basics of When and How to Perform EUS-Guided Pancreatic Duct Interventions. Clin Endosc. 2016 Mar; 49(2):161-7. PMID: 27012290.
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    19. Tomizawa Y, Alpert L, Siddiqui UD. Altered Bowel Movements: A Rare Rectal Lesion. Gastroenterology. 2016 05; 150(5):1092-1093. PMID: 27020337.
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    20. Coté GA, Slivka A, Tarnasky P, Mullady DK, Elmunzer BJ, Elta G, Fogel E, Lehman G, McHenry L, Romagnuolo J, Menon S, Siddiqui UD, Watkins J, Lynch S, Denski C, Xu H, Sherman S. Effect of Covered Metallic Stents Compared With Plastic Stents on Benign Biliary Stricture Resolution: A Randomized Clinical Trial. JAMA. 2016 Mar 22-29; 315(12):1250-7. PMID: 27002446.
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    21. Tang SJ, Vilmann AS, Saftoiu A, Wang W, Streba CT, Fink PP, Griswold M, Wu R, Dietrich CF, Jenssen C, Hocke M, Kantowski M, Pohl J, Fockens P, Annema JT, van der Heijden EH, Havre RF, Pham KD, Kunda R, Deprez PH, Mariana J, Vazquez-Sequeiros E, Larghi A, Buscarini E, Fusaroli P, Lahav M, Puri R, Garg PK, Sharma M, Maluf-Filho F, Sahai A, Brugge WR, Lee LS, Aslanian HR, Wang AY, Shami VM, Markowitz A, Siddiqui AA, Mishra G, Scheiman JM, Isenberg G, Siddiqui UD, Shah RJ, Buxbaum J, Watson RR, Willingham FF, Bhutani MS, Levy MJ, Harris C, Wallace MB, Nolsøe CP, Lorentzen T, Bang N, Sørensen SM, Gilja OH, D'Onofrio M, Piscaglia F, Gritzmann N, Radzina M, Sparchez ZA, Sidhu PS, Freeman S, McCowan TC, de Araujo CR, Patel A, Ali MA, Campbell G, Chen E, Vilmann P. EUS Needle Identification Comparison and Evaluation study (with videos). Gastrointest Endosc. 2016 Sep; 84(3):424-433.e2. PMID: 26873530.
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    22. Chapman CG, Siddiqui UD. New Scopes, New Accessories, New Stents for Interventional Endoscopic Ultrasound. Clin Endosc. 2016 Jan; 49(1):41-6. PMID: 26855923.
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    23. Denner DR, Sangwan N, Becker JB, Hogarth DK, Oldham J, Castillo J, Sperling AI, Solway J, Naureckas ET, Gilbert JA, White SR. Corticosteroid therapy and airflow obstruction influence the bronchial microbiome, which is distinct from that of bronchoalveolar lavage in asthmatic airways. J Allergy Clin Immunol. 2016 05; 137(5):1398-1405.e3. PMID: 26627545.
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    24. Sahakian AB, Laine L, Jamidar PA, Siddiqui UD, Duffy A, Ciarleglio MM, Deng Y, Nagar A, Aslanian HR. Can a Computerized Simulator Assess Skill Level and Improvement in Performance of ERCP? Dig Dis Sci. 2016 Mar; 61(3):722-30. PMID: 26572779.
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    25. Singh A, Siddiqui UD. The Role of Endoscopy in the Diagnosis and Management of Cholangiocarcinoma. J Clin Gastroenterol. 2015 Oct; 49(9):725-37. PMID: 26340677.
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    26. Karia K, Waxman I, Konda VJ, Gress FG, Sethi A, Siddiqui UD, Sharaiha RZ, Kedia P, Jamal-Kabani A, Gaidhane M, Kahaleh M. Needle-based confocal endomicroscopy for pancreatic cysts: the current agreement in interpretation. Gastrointest Endosc. 2016 May; 83(5):924-7. PMID: 26382051.
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    27. Catenacci DV, Chapman CG, Xu P, Koons A, Konda VJ, Siddiqui UD, Waxman I. Acquisition of Portal Venous Circulating Tumor Cells From Patients With Pancreaticobiliary Cancers by Endoscopic Ultrasound. Gastroenterology. 2015 Dec; 149(7):1794-1803.e4. PMID: 26341722.
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    28. Mutyal NN, Radosevich AJ, Bajaj S, Konda V, Siddiqui UD, Waxman I, Goldberg MJ, Rogers JD, Gould B, Eshein A, Upadhye S, Koons A, Gonzalez-Haba Ruiz M, Roy HK, Backman V. In vivo risk analysis of pancreatic cancer through optical characterization of duodenal mucosa. Pancreas. 2015 Jul; 44(5):735-41. PMID: 25906443.
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    29. Chapman CG, Matthews JB, Siddiqui UD. EUS-guided internal drainage of a deep abdominal postoperative abscess after Whipple procedure. Gastrointest Endosc. 2015 Dec; 82(6):1132-3; discussion 1133. PMID: 26112680.
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    30. Huang EY, Inoue T, Leone VA, Dalal S, Touw K, Wang Y, Musch MW, Theriault B, Higuchi K, Donovan S, Gilbert J, Chang EB. Using corticosteroids to reshape the gut microbiome: implications for inflammatory bowel diseases. Inflamm Bowel Dis. 2015 May; 21(5):963-72. PMID: 25738379.
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    31. Endoscopic submucosal dissection. Gastrointest Endosc. 2015; 81(6):1311-25. PMID: 25796422.
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    32. Endoscopes and devices to improve colon polyp detection. Gastrointest Endosc. 2015 May; 81(5):1122-9. PMID: 25746978.
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    33. Ramos T, Dedesko S, Siegel JA, Gilbert JA, Stephens B. Spatial and temporal variations in indoor environmental conditions, human occupancy, and operational characteristics in a new hospital building. PLoS One. 2015; 10(3):e0118207. PMID: 25729898.
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    34. Yue H, Wang M, Wang S, Gilbert JA, Sun X, Wu L, Lin Q, Hu Y, Li X, He Z, Zhou J, Yang Y. The microbe-mediated mechanisms affecting topsoil carbon stock in Tibetan grasslands. ISME J. 2015 Sep; 9(9):2012-20. PMID: 25689025.
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    35. Shade A, Gilbert JA. Temporal patterns of rarity provide a more complete view of microbial diversity. Trends Microbiol. 2015 Jun; 23(6):335-40. PMID: 25667105.
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    36. Gilbert JA, Henry C. Predicting ecosystem emergent properties at multiple scales. Environ Microbiol Rep. 2015 Feb; 7(1):20-2. PMID: 25721595.
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    37. ASGE Technology Committee systematic review and meta-analysis assessing the ASGE PIVI thresholds for adopting real-time endoscopic assessment of the histology of diminutive colorectal polyps. Gastrointest Endosc. 2015 Mar; 81(3):502.e1-502.e16. PMID: 25597420.
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    38. Amaro F, Wang W, Gilbert JA, Anderson OR, Shuman HA. Diverse protist grazers select for virulence-related traits in Legionella. ISME J. 2015 Jul; 9(7):1607-18. PMID: 25575308.
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    39. Siddiqui UD, Gostout CJ. Minimizing, recognizing, and managing endoscopic adverse events. Gastrointest Endosc Clin N Am. 2015 Jan; 25(1):xiii-xiv. PMID: 25442967.
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    40. Gilbert JA, Neufeld JD. Life in a World without Microbes. PLoS Biol. 2014 Dec; 12(12):e1002020. PMID: 25513890.
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    41. Electronic chromoendoscopy. Gastrointest Endosc. 2015 Feb; 81(2):249-61. PMID: 25484330.
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    42. Vitaglione P, Mennella I, Ferracane R, Rivellese AA, Giacco R, Ercolini D, Gibbons SM, La Storia A, Gilbert JA, Jonnalagadda S, Thielecke F, Gallo MA, Scalfi L, Fogliano V. Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber. Am J Clin Nutr. 2015 Feb; 101(2):251-61. PMID: 25646321.
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    43. Singh A, Konda VJ, Siddiqui U, Xiao SY, Waxman I. Use of narrow-band imaging with magnification to predict depth of invasion of early esophageal squamous cell cancer and to guide endoscopic therapy. Gastrointest Endosc. 2015 Feb; 81(2):469-70; discussion 470. PMID: 25450607.
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    44. Yang XR, Li H, Nie SA, Su JQ, Weng BS, Zhu GB, Yao HY, Gilbert JA, Zhu YG. Potential contribution of anammox to nitrogen loss from paddy soils in Southern China. Appl Environ Microbiol. 2015 Feb; 81(3):938-47. PMID: 25416768.
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    45. Gibbons SM, Schwartz T, Fouquier J, Mitchell M, Sangwan N, Gilbert JA, Kelley ST. Ecological succession and viability of human-associated microbiota on restroom surfaces. Appl Environ Microbiol. 2015 Jan; 81(2):765-73. PMID: 25398865.
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    46. Pfister CA, Gilbert JA, Gibbons SM. The role of macrobiota in structuring microbial communities along rocky shores. PeerJ. 2014; 2:e631. PMID: 25337459.
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    47. DiMaio CJ, Buscaglia JM, Gross SA, Aslanian HR, Goodman AJ, Ho S, Kim MK, Pais S, Schnoll-Sussman F, Sethi A, Siddiqui UD, Robbins DH, Adler DG, Nagula S. Practice patterns in FNA technique: A survey analysis. World J Gastrointest Endosc. 2014 Oct 16; 6(10):499-505. PMID: 25324922.
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    48. LaBelle EV, Marshall CW, Gilbert JA, May HD. Influence of acidic pH on hydrogen and acetate production by an electrosynthetic microbiome. PLoS One. 2014; 9(10):e109935. PMID: 25333313.
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    49. Groer MW, Luciano AA, Dishaw LJ, Ashmeade TL, Miller E, Gilbert JA. Development of the preterm infant gut microbiome: a research priority. Microbiome. 2014; 2:38. PMID: 25332768.
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    50. Rubin BE, Sanders JG, Hampton-Marcell J, Owens SM, Gilbert JA, Moreau CS. DNA extraction protocols cause differences in 16S rRNA amplicon sequencing efficiency but not in community profile composition or structure. Microbiologyopen. 2014 Dec; 3(6):910-21. PMID: 25257543.
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    51. Zaborin A, Smith D, Garfield K, Quensen J, Shakhsheer B, Kade M, Tirrell M, Tiedje J, Gilbert JA, Zaborina O, Alverdy JC. Membership and behavior of ultra-low-diversity pathogen communities present in the gut of humans during prolonged critical illness. MBio. 2014 Sep 23; 5(5):e01361-14. PMID: 25249279.
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    52. Shogan BD, Smith DP, Christley S, Gilbert JA, Zaborina O, Alverdy JC. Intestinal anastomotic injury alters spatially defined microbiome composition and function. Microbiome. 2014; 2:35. PMID: 25250176.
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    53. Shogan BD, An GC, Schardey HM, Matthews JB, Umanskiy K, Fleshman JW, Hoeppner J, Fry DE, Garcia-Granereo E, Jeekel H, van Goor H, Dellinger EP, Konda V, Gilbert JA, Auner GW, Alverdy JC. Proceedings of the first international summit on intestinal anastomotic leak, Chicago, Illinois, October 4-5, 2012. Surg Infect (Larchmt). 2014 Oct; 15(5):479-89. PMID: 25215465.
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    54. Konda VJ, Koons A, Siddiqui UD, Xiao SY, Turner JR, Waxman I. Optical biopsy approaches in Barrett's esophagus with next-generation optical coherence tomography. Gastrointest Endosc. 2014 Sep; 80(3):516-7. PMID: 25127947.
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    55. Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vázquez-Baeza Y, Van Treuren W, Hasan NA, Gibson MK, Colwell R, Dantas G, Knight R, Gilbert JA. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science. 2014 Aug 29; 345(6200):1048-52. PMID: 25170151.
      View in: PubMed
    56. Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, Clemente JC, Gilbert JA, Huse SM, Zhou HW, Knight R, Caporaso JG. Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences. PeerJ. 2014; 2:e545. PMID: 25177538.
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    57. Lang GD, Konda VJ, Siddiqui UD, Koons A, Waxman I. A single-center experience of endoscopic submucosal dissection performed in a Western setting. Dig Dis Sci. 2015 Feb; 60(2):531-6. PMID: 25092035.
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    58. Larsen PE, Scott N, Post AF, Field D, Knight R, Hamada Y, Gilbert JA. Satellite remote sensing data can be used to model marine microbial metabolite turnover. ISME J. 2015 Jan; 9(1):166-79. PMID: 25072414.
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    59. Technologies for monitoring the quality of endoscope reprocessing. Gastrointest Endosc. 2014 Sep; 80(3):369-73. PMID: 25012558.
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    60. Hawley ER, Malfatti SA, Pagani I, Huntemann M, Chen A, Foster B, Copeland A, del Rio TG, Pati A, Jansson JR, Gilbert JA, Tringe SG, Lorenson TD, Hess M. Metagenomes from two microbial consortia associated with Santa Barbara seep oil. Mar Genomics. 2014 Dec; 18 Pt B:97-9. PMID: 24958360.
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    61. Parfrey LW, Walters WA, Lauber CL, Clemente JC, Berg-Lyons D, Teiling C, Kodira C, Mohiuddin M, Brunelle J, Driscoll M, Fierer N, Gilbert JA, Knight R. Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity. Front Microbiol. 2014; 5:298. PMID: 24995004.
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    62. Winston ME, Hampton-Marcell J, Zarraonaindia I, Owens SM, Moreau CS, Gilbert JA, Hartsel JA, Hartsel J, Kennedy SJ, Gibbons SM. Understanding cultivar-specificity and soil determinants of the cannabis microbiome. PLoS One. 2014; 9(6):e99641. PMID: 24932479.
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    63. Singh A, Konda VJ, Siddiqui UD. The not so NICE classification. Gastrointest Endosc. 2014 Jun; 79(6):1030-1. PMID: 24856845.
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    64. Gibbons SM, Jones E, Bearquiver A, Blackwolf F, Roundstone W, Scott N, Hooker J, Madsen R, Coleman ML, Gilbert JA. Human and environmental impacts on river sediment microbial communities. PLoS One. 2014; 9(5):e97435. PMID: 24841417.
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    65. Handley KM, Bartels D, O'Loughlin EJ, Williams KH, Trimble WL, Skinner K, Gilbert JA, Desai N, Glass EM, Paczian T, Wilke A, Antonopoulos D, Kemner KM, Meyer F. The complete genome sequence for putative H2- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome. Environ Microbiol. 2014 Nov; 16(11):3443-62. PMID: 24628880.
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    66. Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF. Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points. Environ Microbiol. 2015 Mar; 17(3):622-36. PMID: 24674078.
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    67. Konda VJ, Gonzalez Haba Ruiz M, Koons A, Hart J, Xiao SY, Siddiqui UD, Ferguson MK, Posner M, Patti MG, Waxman I. Complete endoscopic mucosal resection is effective and durable treatment for Barrett's-associated neoplasia. Clin Gastroenterol Hepatol. 2014 Dec; 12(12):2002-10.e1-2. PMID: 24732285.
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    68. Dishaw LJ, Flores-Torres J, Lax S, Gemayel K, Leigh B, Melillo D, Mueller MG, Natale L, Zucchetti I, De Santis R, Pinto MR, Litman GW, Gilbert JA. The gut of geographically disparate Ciona intestinalis harbors a core microbiota. PLoS One. 2014; 9(4):e93386. PMID: 24695540.
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    69. Scott NM, Hess M, Bouskill NJ, Mason OU, Jansson JK, Gilbert JA. The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments. Front Microbiol. 2014; 5:108. PMID: 24723913.
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    70. Gilbert JA, Dick GJ, Jenkins B, Heidelberg J, Allen E, Mackey KR, DeLong EF. Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013). Stand Genomic Sci. 2014 Jun 15; 9(3):1252-8. PMID: 25197495.
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    71. Field D, Sterk P, Kottmann R, De Smet JW, Amaral-Zettler L, Cochrane G, Cole JR, Davies N, Dawyndt P, Garrity GM, Gilbert JA, Glöckner FO, Hirschman L, Klenk HP, Knight R, Kyrpides N, Meyer F, Karsch-Mizrachi I, Morrison N, Robbins R, San Gil I, Sansone S, Schriml L, Tatusova T, Ussery D, Yilmaz P, White O, Wooley J, Caporaso G. Genomic standards consortium projects. Stand Genomic Sci. 2014 Jun 15; 9(3):599-601. PMID: 25197446.
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    72. Mason OU, Scott NM, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill NJ, Prestat E, Borglin S, Joyner DC, Fortney JL, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen TC, Knight R, Gilbert JA, Jansson JK. Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. ISME J. 2014 Jul; 8(7):1464-75. PMID: 24451203.
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    73. Piombino P, Genovese A, Esposito S, Moio L, Cutolo PP, Chambery A, Severino V, Moneta E, Smith DP, Owens SM, Gilbert JA, Ercolini D. Saliva from obese individuals suppresses the release of aroma compounds from wine. PLoS One. 2014; 9(1):e85611. PMID: 24465618.
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    74. Hawley ER, Piao H, Scott NM, Malfatti S, Pagani I, Huntemann M, Chen A, Glavina Del Rio T, Foster B, Copeland A, Jansson J, Pati A, Tringe S, Gilbert JA, Lorenson TD, Hess M. Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California. Stand Genomic Sci. 2014 Jun 15; 9(3):1259-74. PMID: 25197496.
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    75. Alverdy J, Gilbert J, DeFazio JR, Sadowsky MJ, Chang EB, Morowitz MJ, Teitelbaum DH. Proceedings of the 2013 A.S.P.E.N. Research workshop: the interface between nutrition and the gut microbiome: implications and applications for human health [corrected]. JPEN J Parenter Enteral Nutr. 2014 Feb; 38(2):167-78. PMID: 24379111.
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    76. Gilbert JA, Krajmalnik-Brown R, Porazinska DL, Weiss SJ, Knight R. Toward effective probiotics for autism and other neurodevelopmental disorders. Cell. 2013 Dec 19; 155(7):1446-8. PMID: 24360269.
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    77. Gittel A, Bárta J, Kohoutová I, Mikutta R, Owens S, Gilbert J, Schnecker J, Wild B, Hannisdal B, Maerz J, Lashchinskiy N, Capek P, Santrucková H, Gentsch N, Shibistova O, Guggenberger G, Richter A, Torsvik VL, Schleper C, Urich T. Distinct microbial communities associated with buried soils in the Siberian tundra. ISME J. 2014 Apr; 8(4):841-53. PMID: 24335828.
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    78. Devices for the endoscopic treatment of hemorrhoids. Gastrointest Endosc. 2014 Jan; 79(1):8-14. PMID: 24239254.
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    79. Image management systems. Gastrointest Endosc. 2014 Jan; 79(1):15-22. PMID: 24239253.
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    80. Sahakian AB, Aslanian HR, Mehra M, Rossi F, Laine L, Sanchez M, Ciarleglio MM, Adimoolam V, Siddiqui UD. The utility of esophagogastroduodenoscopy before endoscopic ultrasonography in patients undergoing endoscopic ultrasonography for pancreatico-biliary and mediastinal indications. J Clin Gastroenterol. 2013 Nov-Dec; 47(10):857-60. PMID: 23632349.
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    81. Konda VJ, Meining A, Jamil LH, Giovannini M, Hwang JH, Wallace MB, Chang KJ, Siddiqui UD, Hart J, Lo SK, Saunders MD, Aslanian HR, Wroblewski K, Waxman I. A pilot study of in vivo identification of pancreatic cystic neoplasms with needle-based confocal laser endomicroscopy under endosonographic guidance. Endoscopy. 2013 Dec; 45(12):1006-13. PMID: 24163192.
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    82. Wireless capsule endoscopy. Gastrointest Endosc. 2013 Dec; 78(6):805-815. PMID: 24119509.
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    83. Sangwan N, Verma H, Kumar R, Negi V, Lax S, Khurana P, Khurana JP, Gilbert JA, Lal R. Reconstructing an ancestral genotype of two hexachlorocyclohexane-degrading Sphingobium species using metagenomic sequence data. ISME J. 2014 Feb; 8(2):398-408. PMID: 24030592.
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    84. Tools for endoscopic stricture dilation. Gastrointest Endosc. 2013 Sep; 78(3):391-404. PMID: 23948186.
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    85. Dennis KL, Wang Y, Blatner NR, Wang S, Saadalla A, Trudeau E, Roers A, Weaver CT, Lee JJ, Gilbert JA, Chang EB, Khazaie K. Adenomatous polyps are driven by microbe-instigated focal inflammation and are controlled by IL-10-producing T cells. Cancer Res. 2013 Oct 01; 73(19):5905-13. PMID: 23955389.
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    86. Shieh FK, Siddiqui UD, Aslanian HR. Response to Kanna and Hassan. Am J Gastroenterol. 2013 Aug; 108(8):1368-9. PMID: 23912416.
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    87. Tissue adhesives: cyanoacrylate glue and fibrin sealant. Gastrointest Endosc. 2013 Aug; 78(2):209-15. PMID: 23867370.
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    88. Electrosurgical generators. Gastrointest Endosc. 2013 Aug; 78(2):197-208. PMID: 23867369.
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    89. Rubin BE, Gibbons SM, Kennedy S, Hampton-Marcell J, Owens S, Gilbert JA. Investigating the impact of storage conditions on microbial community composition in soil samples. PLoS One. 2013; 8(7):e70460. PMID: 23936206.
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    90. Shogan BD, Smith DP, Packman AI, Kelley ST, Landon EM, Bhangar S, Vora GJ, Jones RM, Keegan K, Stephens B, Ramos T, Kirkup BC, Levin H, Rosenthal M, Foxman B, Chang EB, Siegel J, Cobey S, An G, Alverdy JC, Olsiewski PJ, Martin MO, Marrs R, Hernandez M, Christley S, Morowitz M, Weber S, Gilbert J. The Hospital Microbiome Project: Meeting report for the 2nd Hospital Microbiome Project, Chicago, USA, January 15(th), 2013. Stand Genomic Sci. 2013 Jul 30; 8(3):571-9. PMID: 24501640.
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    91. Bernstein J, Ustun B, Alomari A, Bao F, Aslanian HR, Siddiqui U, Chhieng D, Cai G. Performance of endoscopic ultrasound-guided fine needle aspiration in diagnosing pancreatic neuroendocrine tumors. Cytojournal. 2013; 10:10. PMID: 23858320.
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    92. Bakhru MR, Sethi A, Jamidar PA, Singh SK, Kwon RS, Siddiqui UD, Sawhney M, Talreja JP, Kline P, Malik U, Gaidhane M, Sauer BG, Kahaleh M. Interobserver agreement for confocal imaging of ampullary lesions: a multicenter single-blinded study. J Clin Gastroenterol. 2013 May-Jun; 47(5):440-2. PMID: 23340063.
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    93. New devices and techniques for management of pancreatic fluid collections. Gastrointest Endosc. 2013 Jun; 77(6):835-8. PMID: 23591332.
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    94. Ho HC, Eloubeidi MA, Siddiqui UD, Brugge WR, Rossi F, Bounds BW, Aslanian HR. Endosonographic and cyst fluid characteristics of cystic pancreatic neuroendocrine tumours: a multicentre case series. Dig Liver Dis. 2013 Sep; 45(9):750-3. PMID: 23582348.
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    95. Shieh FK, Siddiqui UD, Padda M, Dharan M, Rossi F, Aslanian HR. Anxiety and perception of cancer risk in patients undergoing endoscopic ultrasonography for pancreas cystic lesions. Pancreas. 2013 Apr; 42(3):548-9. PMID: 23486368.
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    96. Pancreatic and biliary stents. Gastrointest Endosc. 2013 Mar; 77(3):319-27. PMID: 23410693.
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    97. Methods of luminal distention for colonoscopy. Gastrointest Endosc. 2013 Apr; 77(4):519-25. PMID: 23415258.
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    98. Aslanian HR, Shieh FK, Chan FW, Ciarleglio MM, Deng Y, Rogart JN, Jamidar PA, Siddiqui UD. Nurse observation during colonoscopy increases polyp detection: a randomized prospective study. Am J Gastroenterol. 2013 Feb; 108(2):166-72. PMID: 23381064.
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    99. Hampton-Marcell JT, Moormann SM, Owens SM, Gilbert JA. Preparation and metatranscriptomic analyses of host-microbe systems. Methods Enzymol. 2013; 531:169-85. PMID: 24060121.
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    100. Monitoring equipment for endoscopy. Gastrointest Endosc. 2013 Feb; 77(2):175-80. PMID: 23245799.
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    101. Talreja JP, Sethi A, Jamidar PA, Singh SK, Kwon RS, Siddiqui UD, Sawhney M, Bakhru MR, Gaidhane M, Kline P, Sauer BG, Kahaleh M. Interpretation of probe-based confocal laser endomicroscopy of indeterminate biliary strictures: is there any interobserver agreement? Dig Dis Sci. 2012 Dec; 57(12):3299-302. PMID: 22875310.
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    102. Siddiqui EU, Ejaz K, Siddiqui U. Unintentional, paediatric domestic injury in a semi rural area of Karachi. J Pak Med Assoc. 2012 Jul; 62(7):638-43. PMID: 23866505.
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    103. Endoscopic closure devices. Gastrointest Endosc. 2012 Aug; 76(2):244-51. PMID: 22658920.
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    104. Esophageal function testing. Gastrointest Endosc. 2012 Aug; 76(2):231-43. PMID: 22657403.
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    105. Equipment for pediatric endoscopy. Gastrointest Endosc. 2012 Jul; 76(1):8-17. PMID: 22579260.
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    106. Siddiqui UD, Jamidar PA. Bacterial colonization of pancreatic stents: incidental finding or cause for concern? J Clin Gastroenterol. 2012 Apr; 46(4):255-6. PMID: 22395060.
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    107. Emerging technologies for endoscopic hemostasis. Gastrointest Endosc. 2012 May; 75(5):933-7. PMID: 22445927.
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    108. Adimoolam V, Sanchez MJ, Siddiqui UD, Yu S, Dzuira JD, Padda MS, Aslanian HR. Endoscopic ultrasound identifies synchronous pancreas cystic lesions not seen on initial cross-sectional imaging. Pancreas. 2011 Oct; 40(7):1070-2. PMID: 21705942.
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    109. Konda VJ, Aslanian HR, Wallace MB, Siddiqui UD, Hart J, Waxman I. First assessment of needle-based confocal laser endomicroscopy during EUS-FNA procedures of the pancreas (with videos). Gastrointest Endosc. 2011 Nov; 74(5):1049-60. PMID: 21924718.
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    110. Aslanian HR, Estrada JD, Rossi F, Dziura J, Jamidar PA, Siddiqui UD. Endoscopic ultrasound and endoscopic retrograde cholangiopancreatography for obstructing pancreas head masses: combined or separate procedures? J Clin Gastroenterol. 2011 Sep; 45(8):711-3. PMID: 21301359.
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    111. Gancayco J, Siddiqui UD, Jain D, Aslanian HR. Narrow band imaging features and pathological correlations of sessile serrated polyps. Am J Gastroenterol. 2011 Aug; 106(8):1559-60. PMID: 21811282.
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    112. Siddiqui UD, Rossi F, Padda MS, Rosenthal LS, Aslanian HR. Patient preferences after endoscopic ultrasound with fine needle aspiration (EUS-FNA) diagnosis of pancreas cancer: rapid communication valued over long-term relationships. Pancreas. 2011 Jul; 40(5):680-1. PMID: 21602735.
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    113. Siddiqui UD, Aslanian HR. For EUS-guided FNA of solid pancreatic masses, bigger is not always better. Am J Gastroenterol. 2011 Apr; 106(4):801-2; author reply 802. PMID: 21468072.
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    114. Nagler AK, Aslanian HR, Siddiqui UD. Endoscopic ultrasound and gastric lesions. J Clin Gastroenterol. 2011 Mar; 45(3):215-21. PMID: 21278579.
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    115. Padda MS, Siddiqui UD. A rare cause of dysphagia. Gastroenterology. 2010 Jul; 139(1):e3-4. PMID: 20639075.
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    116. Rogart JN, Aslanian HR, Siddiqui UD. Narrow band imaging to detect residual or recurrent neoplastic tissue during surveillance endoscopy. Dig Dis Sci. 2011 Feb; 56(2):472-8. PMID: 20532981.
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    117. Siddiqui UD, Jamidar PA. Managing complications of hereditary pancreatitis: all roads lead to ERCP. J Clin Gastroenterol. 2010 Jan; 44(1):1-2. PMID: 19834339.
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    118. Siddiqui UD, Rossi F, Rosenthal LS, Padda MS, Murali-Dharan V, Aslanian HR. EUS-guided FNA of solid pancreatic masses: a prospective, randomized trial comparing 22-gauge and 25-gauge needles. Gastrointest Endosc. 2009 Dec; 70(6):1093-7. PMID: 19640524.
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    119. Rosenthal LS, Siddiqui UD, Aslanian HR. Endoscopically guided endotracheal intubation: a proposed airway management tool for the endoscopist. Am J Gastroenterol. 2008 Sep; 103(9):2414-5. PMID: 18844639.
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    120. Rogart JN, Siddiqui UD, Jamidar PA, Aslanian HR. Fellow involvement may increase adenoma detection rates during colonoscopy. Am J Gastroenterol. 2008 Nov; 103(11):2841-6. PMID: 18759826.
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    121. Rogart JN, Jain D, Siddiqui UD, Oren T, Lim J, Jamidar P, Aslanian H. Narrow-band imaging without high magnification to differentiate polyps during real-time colonoscopy: improvement with experience. Gastrointest Endosc. 2008 Dec; 68(6):1136-45. PMID: 18691708.
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    122. Rogart JN, Boghos A, Rossi F, Al-Hashem H, Siddiqui UD, Jamidar P, Aslanian H. Analysis of endoscopic management of occluded metal biliary stents at a single tertiary care center. Gastrointest Endosc. 2008 Oct; 68(4):676-82. PMID: 18561919.
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    123. Rogart JN, Siddiqui UD. Inlet patch presenting with food impaction caused by peptic stricture. Clin Gastroenterol Hepatol. 2007 Sep; 5(9):e35-6. PMID: 17683992.
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    124. Siddiqui UD, Jamidar PA. Endoscopic therapy for the treatment of pain in chronic pancreatitis: a success story in tropical pancreatitis. Gastrointest Endosc. 2007 Jul; 66(1):76-8. PMID: 17591477.
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    125. Siddiqui U, Bini EJ, Chandarana K, Leong J, Ramsetty S, Schiliro D, Poles M. Prevalence and impact of diarrhea on health-related quality of life in HIV-infected patients in the era of highly active antiretroviral therapy. J Clin Gastroenterol. 2007 May-Jun; 41(5):484-90. PMID: 17450031.
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    126. Siddiqui U, Denise Proctor D. Flexible sigmoidoscopy and colonoscopy during pregnancy. Gastrointest Endosc Clin N Am. 2006 Jan; 16(1):59-69. PMID: 16546023.
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    127. Siddiqui U, Weinshel EH, Bini EJ. Prevalence and predictors of herbal medication use in veterans with chronic hepatitis C. J Clin Gastroenterol. 2004 Aug; 38(7):605-10. PMID: 15232366.
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