Tobin Sosnick to Nucleic Acid Conformation
This is a "connection" page, showing publications Tobin Sosnick has written about Nucleic Acid Conformation.
Connection Strength
2.186
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Kinetic barriers and the role of topology in protein and RNA folding. Protein Sci. 2008 Aug; 17(8):1308-18.
Score: 0.254
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Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 2005 Sep 23; 352(3):712-22.
Score: 0.211
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RNA folding: models and perspectives. Curr Opin Struct Biol. 2003 Jun; 13(3):309-16.
Score: 0.180
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Characterization of tertiary folding of RNA by circular dichroism and urea. Curr Protoc Nucleic Acid Chem. 2001 May; Chapter 11:Unit 11.5.
Score: 0.155
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Mg2+-dependent compaction and folding of yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by small-angle X-ray scattering. Biochemistry. 2000 Sep 12; 39(36):11107-13.
Score: 0.149
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Application of circular dichroism to study RNA folding transitions. Methods Enzymol. 2000; 317:393-409.
Score: 0.142
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A thermodynamic framework and cooperativity in the tertiary folding of a Mg2+-dependent ribozyme. Biochemistry. 1999 Dec 21; 38(51):16840-6.
Score: 0.141
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Mg2+-dependent folding of a large ribozyme without kinetic traps. Nat Struct Biol. 1999 Dec; 6(12):1091-5.
Score: 0.141
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Pathway modulation, circular permutation and rapid RNA folding under kinetic control. J Mol Biol. 1999 Feb 26; 286(3):721-31.
Score: 0.134
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On docking, scoring and assessing protein-DNA complexes in a rigid-body framework. PLoS One. 2012; 7(2):e32647.
Score: 0.082
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Extended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion. J Mol Biol. 2010 Apr 16; 397(5):1298-306.
Score: 0.072
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Single-molecule nonequilibrium periodic Mg2+-concentration jump experiments reveal details of the early folding pathways of a large RNA. Proc Natl Acad Sci U S A. 2008 May 06; 105(18):6602-7.
Score: 0.063
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Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures. Proc Natl Acad Sci U S A. 2007 Nov 13; 104(46):17995-8000.
Score: 0.061
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Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium. RNA. 2006 Apr; 12(4):598-606.
Score: 0.055
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RNA folding during transcription. Annu Rev Biophys Biomol Struct. 2006; 35:161-75.
Score: 0.054
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Mechanistic insights on the folding of a large ribozyme during transcription. Biochemistry. 2005 May 24; 44(20):7535-42.
Score: 0.051
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Reduced contact order and RNA folding rates. J Mol Biol. 2004 Oct 01; 342(5):1359-65.
Score: 0.049
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Altering the intermediate in the equilibrium folding of unmodified yeast tRNAPhe with monovalent and divalent cations. Biochemistry. 2001 Mar 27; 40(12):3629-38.
Score: 0.039
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Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding. Biochemistry. 1999 Dec 21; 38(51):16831-9.
Score: 0.035
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A novel implicit solvent model for simulating the molecular dynamics of RNA. Biophys J. 2013 Sep 03; 105(5):1248-57.
Score: 0.023
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Discovering RNA-protein interactome by using chemical context profiling of the RNA-protein interface. Cell Rep. 2013 May 30; 3(5):1703-13.
Score: 0.022
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Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch. Proc Natl Acad Sci U S A. 2012 Feb 28; 109(9):3323-8.
Score: 0.021
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A large collapsed-state RNA can exhibit simple exponential single-molecule dynamics. J Mol Biol. 2008 May 09; 378(4):943-53.
Score: 0.016
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Stepwise conversion of a mesophilic to a thermophilic ribozyme. J Mol Biol. 2003 Jul 04; 330(2):177-83.
Score: 0.011
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The rate-limiting step in the folding of a large ribozyme without kinetic traps. Proc Natl Acad Sci U S A. 2002 Jun 25; 99(13):8518-23.
Score: 0.011
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Modular construction of a tertiary RNA structure: the specificity domain of the Bacillus subtilis RNase P RNA. Biochemistry. 2001 Sep 18; 40(37):11202-10.
Score: 0.010
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Structures of fd gene 5 protein.nucleic acid complexes: a combined solution scattering and electron microscopy study. J Mol Biol. 1995 Jun 09; 249(3):576-94.
Score: 0.006