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Fatemeh Khalili-Araghi

TitlePostdoctoral Scholar
InstitutionUniversity of Chicago
DepartmentBiochem/Mol Bio
AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Fuladi S, Jannat RW, Shen L, Weber CR, Khalili-Araghi F. Computational Modeling of Claudin Structure and Function. Int J Mol Sci. 2020 Jan 23; 21(3). PMID: 31979311.
      View in: PubMed
    2. Majidi L, Yasaei P, Warburton RE, Fuladi S, Cavin J, Hu X, Hemmat Z, Cho SB, Abbasi P, Vörös M, Cheng L, Sayahpour B, Bolotin IL, Zapol P, Greeley J, Klie RF, Mishra R, Khalili-Araghi F, Curtiss LA, Salehi-Khojin A. New Class of Electrocatalysts Based on 2D Transition Metal Dichalcogenides in Ionic Liquid. . 2019 Jan; 31(4):e1804453. PMID: 30500098.
      View in: PubMed
    3. Samanta P, Wang Y, Fuladi S, Zou J, Li Y, Shen L, Weber C, Khalili-Araghi F. Molecular determination of claudin-15 organization and channel selectivity. J Gen Physiol. 2018 07 02; 150(7):949-968. PMID: 29915162.
      View in: PubMed
    4. Asadi M, Sayahpour B, Abbasi P, Ngo AT, Karis K, Jokisaari JR, Liu C, Narayanan B, Gerard M, Yasaei P, Hu X, Mukherjee A, Lau KC, Assary RS, Khalili-Araghi F, Klie RF, Curtiss LA, Salehi-Khojin A. A lithium-oxygen battery with a long cycle life in an air-like atmosphere. Nature. 2018 03 21; 555(7697):502-506. PMID: 29565358.
      View in: PubMed
    5. Krueger E, Shim J, Fathizadeh A, Chang AN, Subei B, Yocham KM, Davis PH, Graugnard E, Khalili-Araghi F, Bashir R, Estrada D, Fologea D. Modeling and Analysis of Intercalant Effects on Circular DNA Conformation. ACS Nano. 2016 09 27; 10(9):8910-7. PMID: 27559753.
      View in: PubMed
    6. Yasaei P, Behranginia A, Foroozan T, Asadi M, Kim K, Khalili-Araghi F, Salehi-Khojin A. Stable and Selective Humidity Sensing Using Stacked Black Phosphorus Flakes. ACS Nano. 2015 Oct 27; 9(10):9898-905. PMID: 26401950.
      View in: PubMed
    7. Yasaei P, Fathizadeh A, Hantehzadeh R, Majee AK, El-Ghandour A, Estrada D, Foster C, Aksamija Z, Khalili-Araghi F, Salehi-Khojin A. Bimodal Phonon Scattering in Graphene Grain Boundaries. . 2015 Jul 08; 15(7):4532-40. PMID: 26035002.
      View in: PubMed
    8. Sánchez-Rodríguez JE, Khalili-Araghi F, Miranda P, Roux B, Holmgren M, Bezanilla F. A structural rearrangement of the Na+/K+-ATPase traps ouabain within the external ion permeation pathway. J Mol Biol. 2015 Mar 27; 427(6 Pt B):1335-1344. PMID: 25637661.
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    9. Khalili-Araghi F, Ziervogel B, Gumbart JC, Roux B. Molecular dynamics simulations of membrane proteins under asymmetric ionic concentrations. J Gen Physiol. 2013 Oct; 142(4):465-75. PMID: 24081985.
      View in: PubMed
    10. Vargas E, Yarov-Yarovoy V, Khalili-Araghi F, Catterall WA, Klein ML, Tarek M, Lindahl E, Schulten K, Perozo E, Bezanilla F, Roux B. An emerging consensus on voltage-dependent gating from computational modeling and molecular dynamics simulations. J Gen Physiol. 2012 Dec; 140(6):587-94. PMID: 23183694.
      View in: PubMed
    11. Khalili-Araghi F, Tajkhorshid E, Roux B, Schulten K. Molecular dynamics investigation of the ?-current in the Kv1.2 voltage sensor domains. Biophys J. 2012 Jan 18; 102(2):258-67. PMID: 22339862.
      View in: PubMed
    12. Gumbart J, Khalili-Araghi F, Sotomayor M, Roux B. Constant electric field simulations of the membrane potential illustrated with simple systems. Biochim Biophys Acta. 2012 Feb; 1818(2):294-302. PMID: 22001851.
      View in: PubMed
    13. Sandtner W, Egwolf B, Khalili-Araghi F, Sánchez-Rodríguez JE, Roux B, Bezanilla F, Holmgren M. Ouabain binding site in a functioning Na+/K+ ATPase. J Biol Chem. 2011 Nov 04; 286(44):38177-83. PMID: 21911500.
      View in: PubMed
    14. Salehi-Khojin A, Khalili-Araghi F, Kuroda MA, Lin KY, Leburton JP, Masel RI. On the sensing mechanism in carbon nanotube chemiresistors. ACS Nano. 2011 Jan 25; 5(1):153-8. PMID: 21186822.
      View in: PubMed
    15. Khalili-Araghi F, Jogini V, Yarov-Yarovoy V, Tajkhorshid E, Roux B, Schulten K. Calculation of the gating charge for the Kv1.2 voltage-activated potassium channel. Biophys J. 2010 May 19; 98(10):2189-98. PMID: 20483327.
      View in: PubMed
    16. Khalili-Araghi F, Gumbart J, Wen PC, Sotomayor M, Tajkhorshid E, Schulten K. Molecular dynamics simulations of membrane channels and transporters. Curr Opin Struct Biol. 2009 Apr; 19(2):128-37. PMID: 19345092.
      View in: PubMed
    17. Khalili-Araghi F, Tajkhorshid E, Schulten K. Dynamics of K+ ion conduction through Kv1.2. Biophys J. 2006 Sep 15; 91(6):L72-4. PMID: 16844753.
      View in: PubMed
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