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Fatemeh Khalili-Araghi

TitlePostdoctoral Scholar
InstitutionUniversity of Chicago
DepartmentBiochem/Mol Bio
AddressChicago IL 60637
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. McGuinness S, Sajjadi S, Weber CR, Khalili-Araghi F. Computational Models of Claudin Assembly in Tight Junctions and Strand Properties. Int J Mol Sci. 2024 Mar 16; 25(6). PMID: 38542338; PMCID: PMC10970134.
      Citations:    Fields:    Translation:Cells
    2. Gholivand H, Salehi-Khojin A, Khalili-Araghi F. Phase Separation and Ion Diffusion in Ionic Liquid, Organic Solvent, and Lithium Salt Electrolyte Mixtures. J Phys Chem B. 2023 Aug 31; 127(34):7531-7541. PMID: 37589395.
      Citations:    Fields:    
    3. Wang S, Yang T, Kumar K, Namvar S, Kim S, Ahmadiparidari A, Shahbazi H, Singh S, Hemmat Z, Berry V, Cabana J, Khalili-Araghi F, Huang Z, Salehi-Khojin A. Thermodynamics and Kinetics in Anisotropic Growth of One-Dimensional Midentropy Nanoribbons. ACS Nano. 2023 Aug 08; 17(15):15053-15064. PMID: 37467377.
      Citations:    Fields:    
    4. Fuladi S, McGuinness S, Shen L, Weber CR, Khalili-Araghi F. Molecular mechanism of claudin-15 strand flexibility: A computational study. J Gen Physiol. 2022 12 05; 154(12). PMID: 36318156; PMCID: PMC9629798.
      Citations: 7     Fields:    Translation:Cells
    5. Fuladi S, McGuinness S, Khalili-Araghi F. Role of TM3 in claudin-15 strand flexibility: A molecular dynamics study. Front Mol Biosci. 2022; 9:964877. PMID: 36250014; PMCID: PMC9557151.
      Citations: 4     
    6. Fuladi S, Gholivand H, Ahmadiparidari A, Curtiss LA, Salehi-Khojin A, Khalili-Araghi F. Multicomponent Phase Separation in Ternary Mixture Ionic Liquid Electrolytes. J Phys Chem B. 2021 Jul 01; 125(25):7024-7032. PMID: 34102840.
      Citations:    Fields:    
    7. Fuladi S, Jannat RW, Shen L, Weber CR, Khalili-Araghi F. Computational Modeling of Claudin Structure and Function. Int J Mol Sci. 2020 Jan 23; 21(3). PMID: 31979311; PMCID: PMC7037046.
      Citations: 9     Fields:    Translation:AnimalsCells
    8. Majidi L, Yasaei P, Warburton RE, Fuladi S, Cavin J, Hu X, Hemmat Z, Cho SB, Abbasi P, Cheng L, Sayahpour B, Bolotin IL, Zapol P, Greeley J, Klie RF, Mishra R, Khalili-Araghi F, Curtiss LA, Salehi-Khojin A, Vörös M. New Class of Electrocatalysts Based on 2D Transition Metal Dichalcogenides in Ionic Liquid. Adv Mater. 2019 Jan; 31(4):e1804453. PMID: 30500098.
      Citations: 5     Fields:    
    9. Samanta P, Wang Y, Fuladi S, Zou J, Li Y, Shen L, Weber C, Khalili-Araghi F. Molecular determination of claudin-15 organization and channel selectivity. J Gen Physiol. 2018 07 02; 150(7):949-968. PMID: 29915162; PMCID: PMC6028499.
      Citations: 24     Fields:    Translation:AnimalsCells
    10. Asadi M, Sayahpour B, Abbasi P, Ngo AT, Karis K, Jokisaari JR, Liu C, Narayanan B, Gerard M, Yasaei P, Hu X, Mukherjee A, Lau KC, Assary RS, Khalili-Araghi F, Klie RF, Curtiss LA, Salehi-Khojin A. A lithium-oxygen battery with a long cycle life in an air-like atmosphere. Nature. 2018 03 21; 555(7697):502-506. PMID: 29565358.
      Citations: 23     Fields:    
    11. Krueger E, Shim J, Fathizadeh A, Chang AN, Subei B, Yocham KM, Davis PH, Graugnard E, Khalili-Araghi F, Bashir R, Estrada D, Fologea D. Modeling and Analysis of Intercalant Effects on Circular DNA Conformation. ACS Nano. 2016 09 27; 10(9):8910-7. PMID: 27559753; PMCID: PMC5111899.
      Citations: 5     Fields:    Translation:Cells
    12. Yasaei P, Behranginia A, Foroozan T, Asadi M, Kim K, Khalili-Araghi F, Salehi-Khojin A. Stable and Selective Humidity Sensing Using Stacked Black Phosphorus Flakes. ACS Nano. 2015 Oct 27; 9(10):9898-905. PMID: 26401950.
      Citations: 20     Fields:    
    13. Yasaei P, Fathizadeh A, Hantehzadeh R, El-Ghandour A, Estrada D, Foster C, Khalili-Araghi F, Salehi-Khojin A, Majee AK, Aksamija Z. Bimodal Phonon Scattering in Graphene Grain Boundaries. Nano Lett. 2015 Jul 08; 15(7):4532-40. PMID: 26035002.
      Citations: 9     Fields:    
    14. Khalili-Araghi F, Miranda P, Holmgren M, Bezanilla F, Sánchez-Rodríguez JE, Roux B. A structural rearrangement of the Na+/K+-ATPase traps ouabain within the external ion permeation pathway. J Mol Biol. 2015 Mar 27; 427(6 Pt B):1335-1344. PMID: 25637661; PMCID: PMC4457281.
      Citations: 5     Fields:    Translation:AnimalsCells
    15. Khalili-Araghi F, Ziervogel B, Gumbart JC, Roux B. Molecular dynamics simulations of membrane proteins under asymmetric ionic concentrations. J Gen Physiol. 2013 Oct; 142(4):465-75. PMID: 24081985; PMCID: PMC3787774.
      Citations: 20     Fields:    Translation:AnimalsCells
    16. Vargas E, Yarov-Yarovoy V, Khalili-Araghi F, Catterall WA, Klein ML, Tarek M, Lindahl E, Schulten K, Perozo E, Bezanilla F, Roux B. An emerging consensus on voltage-dependent gating from computational modeling and molecular dynamics simulations. J Gen Physiol. 2012 Dec; 140(6):587-94. PMID: 23183694; PMCID: PMC3514734.
      Citations: 114     Fields:    Translation:Cells
    17. Khalili-Araghi F, Tajkhorshid E, Schulten K, Roux B. Molecular dynamics investigation of the ?-current in the Kv1.2 voltage sensor domains. Biophys J. 2012 Jan 18; 102(2):258-67. PMID: 22339862; PMCID: PMC3260662.
      Citations: 26     Fields:    Translation:Cells
    18. Gumbart J, Khalili-Araghi F, Sotomayor M, Roux B. Constant electric field simulations of the membrane potential illustrated with simple systems. Biochim Biophys Acta. 2012 Feb; 1818(2):294-302. PMID: 22001851; PMCID: PMC3575077.
      Citations: 75     Fields:    Translation:HumansAnimalsCells
    19. Sandtner W, Khalili-Araghi F, Roux B, Bezanilla F, Holmgren M, Egwolf B, Sánchez-Rodríguez JE. Ouabain binding site in a functioning Na+/K+ ATPase. J Biol Chem. 2011 Nov 04; 286(44):38177-38183. PMID: 21911500; PMCID: PMC3207469.
      Citations: 26     Fields:    Translation:AnimalsCells
    20. Salehi-Khojin A, Khalili-Araghi F, Kuroda MA, Lin KY, Leburton JP, Masel RI. On the sensing mechanism in carbon nanotube chemiresistors. ACS Nano. 2011 Jan 25; 5(1):153-8. PMID: 21186822.
      Citations: 17     Fields:    
    21. Khalili-Araghi F, Jogini V, Yarov-Yarovoy V, Tajkhorshid E, Schulten K, Roux B. Calculation of the gating charge for the Kv1.2 voltage-activated potassium channel. Biophys J. 2010 May 19; 98(10):2189-98. PMID: 20483327; PMCID: PMC2872222.
      Citations: 95     Fields:    Translation:AnimalsCells
    22. Khalili-Araghi F, Gumbart J, Wen PC, Sotomayor M, Tajkhorshid E, Schulten K. Molecular dynamics simulations of membrane channels and transporters. Curr Opin Struct Biol. 2009 Apr; 19(2):128-37. PMID: 19345092; PMCID: PMC2680122.
      Citations: 75     Fields:    Translation:Cells
    23. Khalili-Araghi F, Tajkhorshid E, Schulten K. Dynamics of K+ ion conduction through Kv1.2. Biophys J. 2006 Sep 15; 91(6):L72-4. PMID: 16844753; PMCID: PMC1557577.
      Citations: 54     Fields:    Translation:Cells
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