Chuan He to DNA
This is a "connection" page, showing publications Chuan He has written about DNA.
Connection Strength
10.327
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Ultra-mild bisulfite outperforms existing methods for 5-methylcytosine detection with low input DNA. Nat Commun. 2025 Nov 13; 16(1):9939.
Score: 0.610
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Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA. Nat Biotechnol. 2024 Oct; 42(10):1559-1570.
Score: 0.536
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Mammalian DNA N6-methyladenosine: Challenges and new insights. Mol Cell. 2023 02 02; 83(3):343-351.
Score: 0.503
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A human tissue map of 5-hydroxymethylcytosines exhibits tissue specificity through gene and enhancer modulation. Nat Commun. 2020 12 02; 11(1):6161.
Score: 0.433
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Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution. Nat Biotechnol. 2021 02; 39(2):225-235.
Score: 0.425
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DNA 5-Methylcytosine-Specific Amplification and Sequencing. J Am Chem Soc. 2020 03 11; 142(10):4539-4543.
Score: 0.410
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Epigenetics: Making your mark on DNA. Nat Chem. 2017 Oct 24; 9(11):1040-1042.
Score: 0.349
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DNA N6-methyladenine in metazoans: functional epigenetic mark or bystander? Nat Struct Mol Biol. 2017 Jun 06; 24(6):503-506.
Score: 0.340
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Abundant DNA 6mA methylation during early embryogenesis of zebrafish and pig. Nat Commun. 2016 10 07; 7:13052.
Score: 0.325
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Characterization of eukaryotic DNA N(6)-methyladenine by a highly sensitive restriction enzyme-assisted sequencing. Nat Commun. 2016 Apr 15; 7:11301.
Score: 0.314
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Nucleic Acid Modifications in Regulation of Gene Expression. Cell Chem Biol. 2016 Jan 21; 23(1):74-85.
Score: 0.309
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Detection of mismatched 5-hydroxymethyluracil in DNA by selective chemical labeling. Methods. 2015 Jan 15; 72:16-20.
Score: 0.285
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Molecular mechanism and structure of the Saccharomyces cerevisiae iron regulator Aft2. Proc Natl Acad Sci U S A. 2014 Mar 18; 111(11):4043-8.
Score: 0.271
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Nucleic acid oxidation in DNA damage repair and epigenetics. Chem Rev. 2014 Apr 23; 114(8):4602-20.
Score: 0.271
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Potential functional roles of DNA demethylation intermediates. Trends Biochem Sci. 2013 Oct; 38(10):480-4.
Score: 0.261
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Chemical modification-assisted bisulfite sequencing (CAB-Seq) for 5-carboxylcytosine detection in DNA. J Am Chem Soc. 2013 Jun 26; 135(25):9315-7.
Score: 0.258
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Nucleic acid modifications with epigenetic significance. Curr Opin Chem Biol. 2012 Dec; 16(5-6):516-24.
Score: 0.247
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Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA. Nat Chem Biol. 2012 Feb 12; 8(4):328-30.
Score: 0.235
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Preparation of DNA containing 5-hydroxymethyl-2'-deoxycytidine modification through phosphoramidites with TBDMS as 5-hydroxymethyl protecting group. Curr Protoc Nucleic Acid Chem. 2011 Dec; Chapter 4:Unit 4.47.1-18.
Score: 0.232
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Syntheses of 5-formyl- and 5-carboxyl-dC containing DNA oligos as potential oxidation products of 5-hydroxymethylcytosine in DNA. Org Lett. 2011 Jul 01; 13(13):3446-9.
Score: 0.224
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Detection of 5-hydroxymethylcytosine in DNA by transferring a keto-glucose by using T4 phage ß-glucosyltransferase. Chembiochem. 2011 Jul 25; 12(11):1682-5.
Score: 0.224
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Crystal structures of SlyA protein, a master virulence regulator of Salmonella, in free and DNA-bound states. J Biol Chem. 2011 Jun 24; 286(25):22178-85.
Score: 0.223
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Bioorthogonal labeling of 5-hydroxymethylcytosine in genomic DNA and diazirine-based DNA photo-cross-linking probes. Acc Chem Res. 2011 Sep 20; 44(9):709-17.
Score: 0.223
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Syntheses of two 5-hydroxymethyl-2'-deoxycytidine phosphoramidites with TBDMS as the 5-hydroxymethyl protecting group and their incorporation into DNA. J Org Chem. 2011 May 20; 76(10):4182-8.
Score: 0.222
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Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine. Nat Biotechnol. 2011 Jan; 29(1):68-72.
Score: 0.217
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Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked protein-DNA system. Nucleic Acids Res. 2010 Jul; 38(13):4415-25.
Score: 0.206
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A non-heme iron-mediated chemical demethylation in DNA and RNA. Acc Chem Res. 2009 Apr 21; 42(4):519-29.
Score: 0.193
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A diazirine-based nucleoside analogue for efficient DNA interstrand photocross-linking. J Am Chem Soc. 2008 Nov 05; 130(44):14398-9.
Score: 0.187
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Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA. Nature. 2008 Apr 24; 452(7190):961-5.
Score: 0.181
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Diazirine-based DNA photo-cross-linking probes for the study of protein-DNA interactions. Angew Chem Int Ed Engl. 2008; 47(1):90-3.
Score: 0.177
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Direct reversal of DNA alkylation damage. Chem Rev. 2006 Feb; 106(2):215-32.
Score: 0.155
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The structure of the human AGT protein bound to DNA and its implications for damage detection. J Mol Biol. 2005 Jul 22; 350(4):657-66.
Score: 0.149
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Sequencing of N6-methyl-deoxyadenosine at single-base resolution across the mammalian genome. Mol Cell. 2024 02 01; 84(3):596-610.e6.
Score: 0.134
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Jump-seq: Genome-Wide Capture and Amplification of 5-Hydroxymethylcytosine Sites. J Am Chem Soc. 2019 06 05; 141(22):8694-8697.
Score: 0.097
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ALKBHs-facilitated RNA modifications and de-modifications. DNA Repair (Amst). 2016 08; 44:87-91.
Score: 0.079
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Weakened N3 Hydrogen Bonding by 5-Formylcytosine and 5-Carboxylcytosine Reduces Their Base-Pairing Stability. ACS Chem Biol. 2016 Feb 19; 11(2):470-7.
Score: 0.077
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Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics. Cell Res. 2015 Mar; 25(3):386-9.
Score: 0.072
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Kinetic gating mechanism of DNA damage recognition by Rad4/XPC. Nat Commun. 2015 Jan 06; 6:5849.
Score: 0.072
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Tet-mediated covalent labelling of 5-methylcytosine for its genome-wide detection and sequencing. Nat Commun. 2013; 4:1517.
Score: 0.063
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The oxidation-sensing regulator (MosR) is a new redox-dependent transcription factor in Mycobacterium tuberculosis. J Biol Chem. 2012 Nov 02; 287(45):37703-12.
Score: 0.061
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Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine. Nat Methods. 2011 Nov 20; 9(1):75-7.
Score: 0.058
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Detection of 5-hydroxymethylcytosine in a combined glycosylation restriction analysis (CGRA) using restriction enzyme Taq(a)I. Bioorg Med Chem Lett. 2011 Sep 01; 21(17):5075-7.
Score: 0.055
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Grand challenge commentary: RNA epigenetics? Nat Chem Biol. 2010 Dec; 6(12):863-5.
Score: 0.054
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Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase. Nature. 2010 Nov 11; 468(7321):330-3.
Score: 0.054
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Using the bias from flow to elucidate single DNA repair protein sliding and interactions with DNA. Biophys J. 2009 Mar 04; 96(5):1911-7.
Score: 0.048
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Engineering a uranyl-specific binding protein from NikR. Angew Chem Int Ed Engl. 2009; 48(13):2339-41.
Score: 0.047
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Direct repair of the exocyclic DNA adduct 1,N6-ethenoadenine by the DNA repair AlkB proteins. J Am Chem Soc. 2005 Oct 26; 127(42):14594-5.
Score: 0.038
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An exceptionally selective lead(II)-regulatory protein from Ralstonia metallidurans: development of a fluorescent lead(II) probe. Angew Chem Int Ed Engl. 2005 Apr 29; 44(18):2715-2719.
Score: 0.037
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RNA interacts with topoisomerase I to adjust DNA topology. Mol Cell. 2024 09 05; 84(17):3192-3208.e11.
Score: 0.035
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A general strategy to convert the MerR family proteins into highly sensitive and selective fluorescent biosensors for metal ions. J Am Chem Soc. 2004 Jan 28; 126(3):728-9.
Score: 0.034
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DNA N(6)-methyladenine: a new epigenetic mark in eukaryotes? Nat Rev Mol Cell Biol. 2015 Dec; 16(12):705-10.
Score: 0.019