Benoit Roux to Protein Conformation
This is a "connection" page, showing publications Benoit Roux has written about Protein Conformation.
Connection Strength
3.566
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Folding and misfolding of potassium channel monomers during assembly and tetramerization. Proc Natl Acad Sci U S A. 2021 08 24; 118(34).
Score: 0.577
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Glycine substitution in SH3-SH2 connector of Hck tyrosine kinase causes population shift from assembled to disassembled state. Biochim Biophys Acta Gen Subj. 2020 07; 1864(7):129604.
Score: 0.523
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A Catalytically Disabled Double Mutant of Src Tyrosine Kinase Can Be Stabilized into an Active-Like Conformation. J Mol Biol. 2018 03 16; 430(6):881-889.
Score: 0.451
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Isoleucine gate blocks K+ conduction in C-type inactivation. Elife. 2024 Nov 12; 13.
Score: 0.180
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Open and Closed Structures of a Barium-Blocked Potassium Channel. J Mol Biol. 2020 08 07; 432(17):4783-4798.
Score: 0.133
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Proton Countertransport and Coupled Gating in the Sarcoplasmic Reticulum Calcium Pump. J Mol Biol. 2018 12 07; 430(24):5050-5065.
Score: 0.119
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Chemical substitutions in the selectivity filter of potassium channels do not rule out constricted-like conformations for C-type inactivation. Proc Natl Acad Sci U S A. 2017 10 17; 114(42):11145-11150.
Score: 0.110
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Conformational Transitions and Alternating-Access Mechanism in the Sarcoplasmic Reticulum Calcium Pump. J Mol Biol. 2017 03 10; 429(5):647-666.
Score: 0.105
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Instantaneous ion configurations in the K+ ion channel selectivity filter revealed by 2D IR spectroscopy. Science. 2016 09 02; 353(6303):1040-1044.
Score: 0.102
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Transition path theory analysis of c-Src kinase activation. Proc Natl Acad Sci U S A. 2016 08 16; 113(33):9193-8.
Score: 0.102
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A structural rearrangement of the Na+/K+-ATPase traps ouabain within the external ion permeation pathway. J Mol Biol. 2015 Mar 27; 427(6 Pt B):1335-1344.
Score: 0.092
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CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues. Adv Protein Chem Struct Biol. 2014; 96:235-65.
Score: 0.089
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Structural dynamics of the magnesium-bound conformation of CorA in a lipid bilayer. Structure. 2010 Jul 14; 18(7):868-78.
Score: 0.067
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Perspectives on: molecular dynamics and computational methods. J Gen Physiol. 2010 Jun; 135(6):547-8.
Score: 0.066
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Ion permeation through a narrow channel: using gramicidin to ascertain all-atom molecular dynamics potential of mean force methodology and biomolecular force fields. Biophys J. 2006 May 15; 90(10):3447-68.
Score: 0.049
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On the importance of atomic fluctuations, protein flexibility, and solvent in ion permeation. J Gen Physiol. 2004 Dec; 124(6):679-90.
Score: 0.045
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Structure of gramicidin a in a lipid bilayer environment determined using molecular dynamics simulations and solid-state NMR data. J Am Chem Soc. 2003 Aug 13; 125(32):9868-77.
Score: 0.041
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A distinct mechanism of C-type inactivation in the Kv-like KcsA mutant E71V. Nat Commun. 2022 03 23; 13(1):1574.
Score: 0.038
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Energetics of ion conduction through the K+ channel. Nature. 2001 Nov 01; 414(6859):73-7.
Score: 0.037
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Molecular dynamics of the KcsA K(+) channel in a bilayer membrane. Biophys J. 2000 Jun; 78(6):2900-17.
Score: 0.033
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The cavity and pore helices in the KcsA K+ channel: electrostatic stabilization of monovalent cations. Science. 1999 Jul 02; 285(5424):100-2.
Score: 0.031
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Molecular dynamics study of calbindin D9k in the apo and singly and doubly calcium-loaded states. Proteins. 1998 Nov 01; 33(2):265-84.
Score: 0.030
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High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints. Structure. 1997 Dec 15; 5(12):1655-69.
Score: 0.028
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Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water. J Mol Biol. 1997 Sep 26; 272(3):423-42.
Score: 0.028
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The binding site of sodium in the gramicidin A channel: comparison of molecular dynamics with solid-state NMR data. Biophys J. 1997 May; 72(5):1930-45.
Score: 0.027
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Small-angle neutron scattering by a strongly denatured protein: analysis using random polymer theory. Biophys J. 1997 Jan; 72(1):335-42.
Score: 0.026
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Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: a molecular dynamics free energy perturbation study. Biophys J. 1996 Aug; 71(2):670-81.
Score: 0.025
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Structure, energetics, and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer. Proteins. 1996 Jan; 24(1):92-114.
Score: 0.024
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Perspective on computational and structural aspects of kinase discovery from IPK2014. Biochim Biophys Acta. 2015 Oct; 1854(10 Pt B):1595-604.
Score: 0.023
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Functional interactions in bacteriorhodopsin: a theoretical analysis of retinal hydrogen bonding with water. Biophys J. 1995 Jan; 68(1):25-39.
Score: 0.023
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A molecular dynamics study of gating in dioxolane-linked gramicidin A channels. Biophys J. 1994 Oct; 67(4):1370-86.
Score: 0.022
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Dynamics transitions at the outer vestibule of the KcsA potassium channel during gating. Proc Natl Acad Sci U S A. 2014 Feb 04; 111(5):1831-6.
Score: 0.021
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Molecular dynamics simulations of the gramicidin channel. Annu Rev Biophys Biomol Struct. 1994; 23:731-61.
Score: 0.021
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Virtual high-throughput ligand screening. Methods Mol Biol. 2014; 1140:251-61.
Score: 0.021
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Structure and dynamics of bacteriorhodopsin. Comparison of simulation and experiment. FEBS Lett. 1993 Aug 02; 327(3):256-60.
Score: 0.021
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Computer simulations of the flexibility of a series of synthetic cyclic peptide analogues. Biopolymers. 1993 Aug; 33(8):1249-70.
Score: 0.021
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Configurational distribution of denatured phosphoglycerate kinase. J Mol Biol. 1993 Jun 05; 231(3):840-8.
Score: 0.020
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Ouabain binding site in a functioning Na+/K+ ATPase. J Biol Chem. 2011 Nov 04; 286(44):38177-38183.
Score: 0.018
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Ion transport in a model gramicidin channel. Structure and thermodynamics. Biophys J. 1991 May; 59(5):961-81.
Score: 0.018
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Biogenesis of the pore architecture of a voltage-gated potassium channel. Proc Natl Acad Sci U S A. 2011 Feb 22; 108(8):3240-5.
Score: 0.017
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The structure of gramicidin A in dimethylsulfoxide/acetone. Eur J Biochem. 1990 Nov 26; 194(1):57-60.
Score: 0.017
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Nanosculpting reversed wavelength sensitivity into a photoswitchable iGluR. Proc Natl Acad Sci U S A. 2009 Apr 21; 106(16):6814-9.
Score: 0.015
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The normal modes of the gramicidin-A dimer channel. Biophys J. 1988 Mar; 53(3):297-309.
Score: 0.014
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Insertion of a glycosylphosphatidylinositol-anchored enzyme into liposomes. J Membr Biol. 2004 Feb 01; 197(3):169-77.
Score: 0.011
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Local deformations revealed by dynamics simulations of DNA polymerase Beta with DNA mismatches at the primer terminus. J Mol Biol. 2002 Aug 16; 321(3):459-78.
Score: 0.010
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Dynamic coupling between the SH2 and SH3 domains of c-Src and Hck underlies their inactivation by C-terminal tyrosine phosphorylation. Cell. 2001 Apr 06; 105(1):115-26.
Score: 0.009
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A Grand Canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels. Biophys J. 2000 Aug; 79(2):788-801.
Score: 0.008
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A FTIR spectroscopy evidence of the interactions between wheat germ agglutinin and N-acetylglucosamine residues. FEBS Lett. 1999 Aug 13; 456(3):361-4.
Score: 0.008
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Simulation analysis of the retinal conformational equilibrium in dark-adapted bacteriorhodopsin. Biophys J. 1999 Apr; 76(4):1909-17.
Score: 0.008
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Thermal and pH stabilities of alkaline phosphatase from bovine intestinal mucosa: a FTIR study. Biochim Biophys Acta. 1995 Apr 27; 1248(2):186-92.
Score: 0.006
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Nuclear proteins interacting with DNA and tubulin. Study of the interaction of the High Mobility Group protein 1 with tubulin. Biochim Biophys Acta. 1994 Sep 13; 1219(1):39-46.
Score: 0.006
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Differential nucleotide binding to catalytic and noncatalytic sites and related conformational changes involving alpha/beta-subunit interactions as monitored by sensitive intrinsic fluorescence in Schizosaccharomyces pombe mitochondrial F1. Biochemistry. 1992 Jun 30; 31(25):5791-8.
Score: 0.005
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Intrinsic tryptophan fluorescence of Schizosaccharomyces pombe mitochondrial F1-ATPase. A powerful probe for phosphate and nucleotide interactions. Biochemistry. 1991 Apr 02; 30(13):3256-62.
Score: 0.004
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Isolation and characterisation of five histone H1 subtypes from adult rat liver. Biochim Biophys Acta. 1989 Nov 02; 1009(2):121-8.
Score: 0.004
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Epitope of OSCP oligomycin sensitivity conferring protein exposed at the surface of the mitochondrial ATPase-ATPsynthase complex. Biochimie. 1989 Aug; 71(8):917-29.
Score: 0.004
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ANTHEPROT: a package for protein sequence analysis using a microcomputer. Comput Appl Biosci. 1988 Aug; 4(3):351-6.
Score: 0.004
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Phosphorylation- and ligand-induced conformational changes of rat liver fructose-1,6-bisphosphatase. Arch Biochem Biophys. 1986 Aug 01; 248(2):604-11.
Score: 0.003
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Histone phosphorylation in native chromatin induces local structural changes as probed by electric birefringence. J Mol Biol. 1985 Nov 20; 186(2):367-79.
Score: 0.003
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The effect of histone H1 on the compaction of oligonucleosomes. A quasielastic light scattering study. Biophys Chem. 1985 Jun; 22(1-2):53-64.
Score: 0.003