Tobin Sosnick to Proteins
This is a "connection" page, showing publications Tobin Sosnick has written about Proteins.
Connection Strength
7.650
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Collapse and Protein Folding: Should We Be Surprised That Biothermodynamics Works So Well? Annu Rev Biophys. 2025 05; 54(1):17-34.
Score: 0.605
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Water as a Good Solvent for Unfolded Proteins: Folding and Collapse are Fundamentally Different. J Mol Biol. 2020 04 17; 432(9):2882-2889.
Score: 0.432
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Commonly used FRET fluorophores promote collapse of an otherwise disordered protein. Proc Natl Acad Sci U S A. 2019 04 30; 116(18):8889-8894.
Score: 0.408
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Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours. PLoS Comput Biol. 2018 12; 14(12):e1006578.
Score: 0.400
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Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics. PLoS Comput Biol. 2018 12; 14(12):e1006342.
Score: 0.400
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Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar. Proc Natl Acad Sci U S A. 2015 Jul 07; 112(27):8302-7.
Score: 0.313
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Revealing what gets buried first in protein folding. Proc Natl Acad Sci U S A. 2013 Oct 15; 110(42):16704-5.
Score: 0.278
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Simplified protein models: predicting folding pathways and structure using amino acid sequences. Phys Rev Lett. 2013 Jul 12; 111(2):028103.
Score: 0.274
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Context and force field dependence of the loss of protein backbone entropy upon folding using realistic denatured and native state ensembles. J Am Chem Soc. 2012 Sep 26; 134(38):15929-36.
Score: 0.259
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On docking, scoring and assessing protein-DNA complexes in a rigid-body framework. PLoS One. 2012; 7(2):e32647.
Score: 0.249
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Modeling large regions in proteins: applications to loops, termini, and folding. Protein Sci. 2012 Jan; 21(1):107-21.
Score: 0.245
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Biochemistry. How proteins fold. Science. 2011 Oct 28; 334(6055):464-5.
Score: 0.243
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The folding of single domain proteins--have we reached a consensus? Curr Opin Struct Biol. 2011 Feb; 21(1):12-24.
Score: 0.229
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Protein structure prediction enhanced with evolutionary diversity: SPEED. Protein Sci. 2010 Mar; 19(3):520-34.
Score: 0.217
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Kinetic barriers and the role of topology in protein and RNA folding. Protein Sci. 2008 Aug; 17(8):1308-18.
Score: 0.192
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Characterizing protein folding transition States using Psi-analysis. Methods Mol Biol. 2007; 350:83-104.
Score: 0.174
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Small proteins fold through transition states with native-like topologies. J Mol Biol. 2006 Aug 25; 361(4):755-70.
Score: 0.168
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Characterizing the protein folding transition state using psi analysis. Chem Rev. 2006 May; 106(5):1862-76.
Score: 0.166
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Barrier-limited, microsecond folding of a stable protein measured with hydrogen exchange: Implications for downhill folding. Proc Natl Acad Sci U S A. 2004 Nov 02; 101(44):15639-44.
Score: 0.150
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Discerning the structure and energy of multiple transition states in protein folding using psi-analysis. J Mol Biol. 2004 Mar 19; 337(2):463-75.
Score: 0.144
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Distinguishing foldable proteins from nonfolders: when and how do they differ? Proteins. 2002 Oct 01; 49(1):15-23.
Score: 0.130
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Dynamics of hydrogen bond desolvation in protein folding. J Mol Biol. 2002 Aug 23; 321(4):659-75.
Score: 0.129
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Entropic benefit of a cross-link in protein association. Proteins. 2002 Aug 01; 48(2):341-51.
Score: 0.128
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Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects. Nat Struct Biol. 2002 Jun; 9(6):458-63.
Score: 0.127
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Challenges and Advantages of Accounting for Backbone Flexibility in Prediction of Protein-Protein Complexes. J Chem Theory Comput. 2022 Mar 08; 18(3):2016-2032.
Score: 0.124
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Engineered Metal-Binding Sites to Probe Protein Folding Transition States: Psi Analysis. Methods Mol Biol. 2022; 2376:31-63.
Score: 0.123
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Prediction and Validation of a Protein's Free Energy Surface Using Hydrogen Exchange and (Importantly) Its Denaturant Dependence. J Chem Theory Comput. 2022 Jan 11; 18(1):550-561.
Score: 0.123
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D/H amide kinetic isotope effects reveal when hydrogen bonds form during protein folding. Nat Struct Biol. 2000 Jan; 7(1):62-71.
Score: 0.107
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Hydrogen exchange: the modern legacy of Linderstrøm-Lang. Protein Sci. 1997 May; 6(5):1101-9.
Score: 0.089
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Protein minimization: downsizing through mutation. Proc Natl Acad Sci U S A. 1996 Jun 11; 93(12):5680-1.
Score: 0.084
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Introduction of a polar core into the de novo designed protein Top7. Protein Sci. 2016 07; 25(7):1299-307.
Score: 0.082
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Random coil negative control reproduces the discrepancy between scattering and FRET measurements of denatured protein dimensions. Proc Natl Acad Sci U S A. 2015 May 26; 112(21):6631-6.
Score: 0.078
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Ionic strength independence of charge distributions in solvation of biomolecules. J Chem Phys. 2014 Dec 14; 141(22):22D503.
Score: 0.076
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TULIPs: tunable, light-controlled interacting protein tags for cell biology. Nat Methods. 2012 Mar 04; 9(4):379-84.
Score: 0.062
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Small-angle X-ray scattering and single-molecule FRET spectroscopy produce highly divergent views of the low-denaturant unfolded state. J Mol Biol. 2012 May 04; 418(3-4):226-36.
Score: 0.062
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Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scattering. Biophys J. 2011 Oct 19; 101(8):2061-9.
Score: 0.061
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Automated real-space refinement of protein structures using a realistic backbone move set. Biophys J. 2011 Aug 17; 101(4):899-909.
Score: 0.060
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Modeling the hydration layer around proteins: HyPred. Biophys J. 2010 Sep 08; 99(5):1611-9.
Score: 0.056
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Rationally improving LOV domain-based photoswitches. Nat Methods. 2010 Aug; 7(8):623-6.
Score: 0.055
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A probabilistic and continuous model of protein conformational space for template-free modeling. J Comput Biol. 2010 Jun; 17(6):783-98.
Score: 0.055
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Mimicking the folding pathway to improve homology-free protein structure prediction. Proc Natl Acad Sci U S A. 2009 Mar 10; 106(10):3734-9.
Score: 0.051
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Outcome of a workshop on applications of protein models in biomedical research. Structure. 2009 Feb 13; 17(2):151-9.
Score: 0.050
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The highly cooperative folding of small naturally occurring proteins is likely the result of natural selection. Cell. 2007 Feb 09; 128(3):613-24.
Score: 0.044
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Minimalist representations and the importance of nearest neighbor effects in protein folding simulations. J Mol Biol. 2006 Nov 03; 363(4):835-57.
Score: 0.042
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Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins. Protein Sci. 2005 Mar; 14(3):602-16.
Score: 0.038
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Random-coil behavior and the dimensions of chemically unfolded proteins. Proc Natl Acad Sci U S A. 2004 Aug 24; 101(34):12491-6.
Score: 0.037
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Mechanisms and uses of hydrogen exchange. Curr Opin Struct Biol. 1996 Feb; 6(1):18-23.
Score: 0.020
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Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification. Protein Sci. 2007 Oct; 16(10):2123-39.
Score: 0.011