Tobin R. Sosnick to Kinetics
This is a "connection" page, showing publications Tobin R. Sosnick has written about Kinetics.
Connection Strength
2.430
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Engineered Metal-Binding Sites to Probe Protein Folding Transition States: Psi Analysis. Methods Mol Biol. 2022; 2376:31-63.
Score: 0.171
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A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations. Biophys J. 2018 11 20; 115(10):1872-1884.
Score: 0.137
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Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange. Proc Natl Acad Sci U S A. 2016 Apr 26; 113(17):4747-52.
Score: 0.115
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Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar. Proc Natl Acad Sci U S A. 2015 Jul 07; 112(27):8302-7.
Score: 0.109
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De novo prediction of protein folding pathways and structure using the principle of sequential stabilization. Proc Natl Acad Sci U S A. 2012 Oct 23; 109(43):17442-7.
Score: 0.090
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The folding transition state of protein L is extensive with nonnative interactions (and not small and polarized). J Mol Biol. 2012 Jul 13; 420(3):220-34.
Score: 0.087
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The folding of single domain proteins--have we reached a consensus? Curr Opin Struct Biol. 2011 Feb; 21(1):12-24.
Score: 0.079
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Metal binding kinetics of bi-histidine sites used in psi analysis: evidence of high-energy protein folding intermediates. Biochemistry. 2009 Apr 07; 48(13):2950-9.
Score: 0.071
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Quantifying the structural requirements of the folding transition state of protein A and other systems. J Mol Biol. 2008 Sep 19; 381(5):1362-81.
Score: 0.067
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Characterizing protein folding transition States using Psi-analysis. Methods Mol Biol. 2007; 350:83-104.
Score: 0.060
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Small proteins fold through transition states with native-like topologies. J Mol Biol. 2006 Aug 25; 361(4):755-70.
Score: 0.058
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Characterizing the protein folding transition state using psi analysis. Chem Rev. 2006 May; 106(5):1862-76.
Score: 0.058
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Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. J Mol Biol. 2005 Sep 23; 352(3):712-22.
Score: 0.055
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Barrier-limited, microsecond folding of a stable protein measured with hydrogen exchange: Implications for downhill folding. Proc Natl Acad Sci U S A. 2004 Nov 02; 101(44):15639-44.
Score: 0.052
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Comment on "Force-clamp spectroscopy monitors the folding trajectory of a single protein". Science. 2004 Oct 15; 306(5695):411; author reply 411.
Score: 0.052
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Reduced contact order and RNA folding rates. J Mol Biol. 2004 Oct 01; 342(5):1359-65.
Score: 0.052
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Fast folding of a helical protein initiated by the collision of unstructured chains. Proc Natl Acad Sci U S A. 2004 Sep 14; 101(37):13478-82.
Score: 0.051
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Discerning the structure and energy of multiple transition states in protein folding using psi-analysis. J Mol Biol. 2004 Mar 19; 337(2):463-75.
Score: 0.050
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Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides. J Mol Biol. 2003 Aug 15; 331(3):693-711.
Score: 0.048
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RNA folding: models and perspectives. Curr Opin Struct Biol. 2003 Jun; 13(3):309-16.
Score: 0.047
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D/H amide isotope effect in model alpha-helical peptides. J Am Chem Soc. 2002 Nov 27; 124(47):13994-5.
Score: 0.045
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Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding. J Mol Biol. 2002 Nov 22; 324(2):359-71.
Score: 0.045
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Distinguishing foldable proteins from nonfolders: when and how do they differ? Proteins. 2002 Oct 01; 49(1):15-23.
Score: 0.045
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Dynamics of hydrogen bond desolvation in protein folding. J Mol Biol. 2002 Aug 23; 321(4):659-75.
Score: 0.045
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Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects. Nat Struct Biol. 2002 Jun; 9(6):458-63.
Score: 0.044
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Contribution of hydrogen bonding to protein stability estimated from isotope effects. Biochemistry. 2002 Feb 19; 41(7):2120-9.
Score: 0.043
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Engineered metal binding sites map the heterogeneous folding landscape of a coiled coil. Nat Struct Biol. 2001 Dec; 8(12):1042-7.
Score: 0.042
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Folding and misfolding of potassium channel monomers during assembly and tetramerization. Proc Natl Acad Sci U S A. 2021 08 24; 118(34).
Score: 0.042
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Distinguishing between two-state and three-state models for ubiquitin folding. Biochemistry. 2000 Sep 26; 39(38):11696-701.
Score: 0.039
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D/H amide kinetic isotope effects reveal when hydrogen bonds form during protein folding. Nat Struct Biol. 2000 Jan; 7(1):62-71.
Score: 0.037
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Mg2+-dependent folding of a large ribozyme without kinetic traps. Nat Struct Biol. 1999 Dec; 6(12):1091-5.
Score: 0.037
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Pathway modulation, circular permutation and rapid RNA folding under kinetic control. J Mol Biol. 1999 Feb 26; 286(3):721-31.
Score: 0.035
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Viscosity dependence of the folding kinetics of a dimeric and monomeric coiled coil. Biochemistry. 1999 Feb 23; 38(8):2601-9.
Score: 0.035
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Trifluoroethanol promotes helix formation by destabilizing backbone exposure: desolvation rather than native hydrogen bonding defines the kinetic pathway of dimeric coiled coil folding. Biochemistry. 1998 Oct 13; 37(41):14613-22.
Score: 0.034
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Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity. Nat Struct Biol. 1997 Nov; 4(11):931-8.
Score: 0.032
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Hydrogen exchange: the modern legacy of Linderstrøm-Lang. Protein Sci. 1997 May; 6(5):1101-9.
Score: 0.031
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Perplexing cooperative folding and stability of a low-sequence complexity, polyproline 2 protein lacking a hydrophobic core. Proc Natl Acad Sci U S A. 2017 02 28; 114(9):2241-2246.
Score: 0.030
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Protein minimization: downsizing through mutation. Proc Natl Acad Sci U S A. 1996 Jun 11; 93(12):5680-1.
Score: 0.029
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Molecular collapse: the rate-limiting step in two-state cytochrome c folding. Proteins. 1996 Apr; 24(4):413-26.
Score: 0.029
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The role of helix formation in the folding of a fully alpha-helical coiled coil. Proteins. 1996 Apr; 24(4):427-32.
Score: 0.029
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The barriers in protein folding. Nat Struct Biol. 1994 Mar; 1(3):149-56.
Score: 0.025
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Denatured states of ribonuclease A have compact dimensions and residual secondary structure. Biochemistry. 1992 Sep 08; 31(35):8329-35.
Score: 0.022
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TULIPs: tunable, light-controlled interacting protein tags for cell biology. Nat Methods. 2012 Mar 04; 9(4):379-84.
Score: 0.022
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Probing the folding transition state of ubiquitin mutants by temperature-jump-induced downhill unfolding. Biochemistry. 2008 Dec 30; 47(52):13870-7.
Score: 0.017
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Single-molecule nonequilibrium periodic Mg2+-concentration jump experiments reveal details of the early folding pathways of a large RNA. Proc Natl Acad Sci U S A. 2008 May 06; 105(18):6602-7.
Score: 0.017
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The highly cooperative folding of small naturally occurring proteins is likely the result of natural selection. Cell. 2007 Feb 09; 128(3):613-24.
Score: 0.015
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On the precision of experimentally determined protein folding rates and phi-values. Protein Sci. 2006 Mar; 15(3):553-63.
Score: 0.014
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Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins. Protein Sci. 2005 Mar; 14(3):602-16.
Score: 0.013
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The rate-limiting step in the folding of a large ribozyme without kinetic traps. Proc Natl Acad Sci U S A. 2002 Jun 25; 99(13):8518-23.
Score: 0.011
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PAS domain receptor photoactive yellow protein is converted to a molten globule state upon activation. J Biol Chem. 2001 Jun 15; 276(24):20821-3.
Score: 0.010
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The burst phase in ribonuclease A folding and solvent dependence of the unfolded state. Nat Struct Biol. 1998 Oct; 5(10):882-4.
Score: 0.009