Tobin R. Sosnick to Molecular Dynamics Simulation
This is a "connection" page, showing publications Tobin R. Sosnick has written about Molecular Dynamics Simulation.
Connection Strength
3.875
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On the Interpretation of Force-Induced Unfolding Studies of Membrane Proteins Using Fast Simulations. Biophys J. 2019 10 15; 117(8):1429-1441.
Score: 0.604
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Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics. PLoS Comput Biol. 2018 12; 14(12):e1006342.
Score: 0.575
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A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations. Biophys J. 2018 11 20; 115(10):1872-1884.
Score: 0.568
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Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar. Proc Natl Acad Sci U S A. 2015 Jul 07; 112(27):8302-7.
Score: 0.451
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Simplified protein models: predicting folding pathways and structure using amino acid sequences. Phys Rev Lett. 2013 Jul 12; 111(2):028103.
Score: 0.394
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Factors That Control the Force Needed to Unfold a Membrane Protein in Silico Depend on the Mode of Denaturation. Int J Mol Sci. 2023 Jan 31; 24(3).
Score: 0.191
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Molecular dynamics study of water channels in natural and synthetic amyloid-ß fibrils. J Chem Phys. 2021 Jun 21; 154(23):235102.
Score: 0.171
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Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours. PLoS Comput Biol. 2018 12; 14(12):e1006578.
Score: 0.144
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Ionic strength independence of charge distributions in solvation of biomolecules. J Chem Phys. 2014 Dec 14; 141(22):22D503.
Score: 0.109
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A novel implicit solvent model for simulating the molecular dynamics of RNA. Biophys J. 2013 Sep 03; 105(5):1248-57.
Score: 0.099
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De novo prediction of protein folding pathways and structure using the principle of sequential stabilization. Proc Natl Acad Sci U S A. 2012 Oct 23; 109(43):17442-7.
Score: 0.093
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The folding transition state of protein L is extensive with nonnative interactions (and not small and polarized). J Mol Biol. 2012 Jul 13; 420(3):220-34.
Score: 0.090
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The amino-terminal helix modulates light-activated conformational changes in AsLOV2. J Mol Biol. 2012 May 25; 419(1-2):61-74.
Score: 0.090
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Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scattering. Biophys J. 2011 Oct 19; 101(8):2061-9.
Score: 0.087
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New era of molecular structure and dynamics from solution scattering experiments. Biopolymers. 2011 Aug; 95(8):503-4.
Score: 0.086
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Modeling the hydration layer around proteins: HyPred. Biophys J. 2010 Sep 08; 99(5):1611-9.
Score: 0.081
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Folding and misfolding of potassium channel monomers during assembly and tetramerization. Proc Natl Acad Sci U S A. 2021 08 24; 118(34).
Score: 0.043