Sebastian Pott
Title | Assistant Professor |
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Institution | University of Chicago |
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Department | Medicine-Genetic Medicine |
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Address | Chicago IL 60637
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Email |  |
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vCard | Download vCard |
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Overview The ultimate research goal of my lab is to obtain a mechanistic and quantitative understanding of gene regulation in individual cells under normal conditions and in disease. Toward this aim, we are developing and applying single-cell and single-molecule genomics technologies that facilitate genome-wide measurements in primary tissues and cells.
Biography Princeton University, Princeton | Postdoc | 08/2014 | Genomics | University of North Carolina, Chapel Hill | Postdoc | 07/2013 | Genomics | Karolinska Institute, Stockholm, Sweden | PhD | 06/2011 | Medical Sciences | University of Hannover, Hanover, Germany | Diplom/Masters | 1/2006 | Biochemistry |
ORNG Applications Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications.
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Rowton M, Perez-Cervantes C, Hur S, Jacobs-Li J, Lu E, Deng N, Guzzetta A, Hoffmann AD, Stocker M, Steimle JD, Lazarevic S, Oubaha S, Yang XH, Kim C, Yu S, Eckart H, Koska M, Hanson E, Chan SSK, Garry DJ, Kyba M, Basu A, Ikegami K, Pott S, Moskowitz IP. Hedgehog signaling activates a mammalian heterochronic gene regulatory network controlling differentiation timing across lineages. Dev Cell. 2022 09 26; 57(18):2181-2203.e9. PMID: 36108627.
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Mittleman BE, Pott S, Warland S, Barr K, Cuevas C, Gilad Y. Divergence in alternative polyadenylation contributes to gene regulatory differences between humans and chimpanzees. Elife. 2021 02 17; 10. PMID: 33595436.
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Mittleman BE, Pott S, Warland S, Zeng T, Mu Z, Kaur M, Gilad Y, Li Y. Alternative polyadenylation mediates genetic regulation of gene expression. Elife. 2020 06 25; 9. PMID: 32584258.
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Guzzetta A, Koska M, Rowton M, Sullivan KR, Jacobs-Li J, Kweon J, Hidalgo H, Eckart H, Hoffmann AD, Back R, Lozano S, Moon AM, Basu A, Bressan M, Pott S, Moskowitz IP. Hedgehog-FGF signaling axis patterns anterior mesoderm during gastrulation. Proc Natl Acad Sci U S A. 2020 07 07; 117(27):15712-15723. PMID: 32561646.
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Selewa A, Dohn R, Eckart H, Lozano S, Xie B, Gauchat E, Elorbany R, Rhodes K, Burnett J, Gilad Y, Pott S, Basu A. Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation. Sci Rep. 2020 01 30; 10(1):1535. PMID: 32001747.
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Malik V, Glaser LV, Zimmer D, Velychko S, Weng M, Holzner M, Arend M, Chen Y, Srivastava Y, Veerapandian V, Shah Z, Esteban MA, Wang H, Chen J, Sch?ler HR, Hutchins AP, Meijsing SH, Pott S, Jauch R. Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2. Nat Commun. 2019 08 02; 10(1):3477. PMID: 31375664.
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Chen CF, Pohl TJ, Pott S, Zakian VA. Two Pif1 Family DNA Helicases Cooperate in Centromere Replication and Segregation in Saccharomyces cerevisiae. Genetics. 2019 01; 211(1):105-119. PMID: 30442759.
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Israel JW, Chappell GA, Simon JM, Pott S, Safi A, Lewis L, Cotney P, Boulos HS, Bodnar W, Lieb JD, Crawford GE, Furey TS, Rusyn I. Tissue- and strain-specific effects of a genotoxic carcinogen 1,3-butadiene on chromatin and transcription. Mamm Genome. 2018 02; 29(1-2):153-167. PMID: 29429127.
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Chappell GA, Israel JW, Simon JM, Pott S, Safi A, Eklund K, Sexton KG, Bodnar W, Lieb JD, Crawford GE, Rusyn I, Furey TS. Variation in DNA-Damage Responses to an Inhalational Carcinogen (1,3-Butadiene) in Relation to Strain-Specific Differences in Chromatin Accessibility and Gene Transcription Profiles in C57BL/6J and CAST/EiJ Mice. Environ Health Perspect. 2017 10 16; 125(10):107006. PMID: 29038090.
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Pott S. Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells. Elife. 2017 06 27; 6. PMID: 28653622.
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Tran PLT, Pohl TJ, Chen CF, Chan A, Pott S, Zakian VA. PIF1 family DNA helicases suppress R-loop mediated genome instability at tRNA genes. Nat Commun. 2017 04 21; 8:15025. PMID: 28429714.
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Pott S, Lieb JD. Single-cell ATAC-seq: strength in numbers. Genome Biol. 2015 Aug 21; 16:172. PMID: 26294014.
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Pott S, Lieb JD. What are super-enhancers? Nat Genet. 2015 Jan; 47(1):8-12. PMID: 25547603.
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Tropberger P, Pott S, Keller C, Kamieniarz-Gdula K, Caron M, Richter F, Li G, Mittler G, Liu ET, B?hler M, Margueron R, Schneider R. Regulation of transcription through acetylation of H3K122 on the lateral surface of the histone octamer. Cell. 2013 Feb 14; 152(4):859-72. PMID: 23415232.
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Pott S, Kamrani NK, Bourque G, Pettersson S, Liu ET. PPARG binding landscapes in macrophages suggest a genome-wide contribution of PU.1 to divergent PPARG binding in human and mouse. PLoS One. 2012; 7(10):e48102. PMID: 23118933.
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Gy?ry I, Boller S, Nechanitzky R, Mandel E, Pott S, Liu E, Grosschedl R. Transcription factor Ebf1 regulates differentiation stage-specific signaling, proliferation, and survival of B cells. Genes Dev. 2012 Apr 01; 26(7):668-82. PMID: 22431510.
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Liu ET, Pott S, Huss M. Q&A: ChIP-seq technologies and the study of gene regulation. BMC Biol. 2010 May 14; 8:56. PMID: 20529237.
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Treiber T, Mandel EM, Pott S, Gy?ry I, Firner S, Liu ET, Grosschedl R. Early B cell factor 1 regulates B cell gene networks by activation, repression, and transcription- independent poising of chromatin. Immunity. 2010 May 28; 32(5):714-25. PMID: 20451411.
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Hamza MS, Pott S, Vega VB, Thomsen JS, Kandhadayar GS, Ng PW, Chiu KP, Pettersson S, Wei CL, Ruan Y, Liu ET. De-novo identification of PPARgamma/RXR binding sites and direct targets during adipogenesis. PLoS One. 2009; 4(3):e4907. PMID: 19300518.
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Lundin A, Bok CM, Aronsson L, Bj?rkholm B, Gustafsson JA, Pott S, Arulampalam V, Hibberd M, Rafter J, Pettersson S. Gut flora, Toll-like receptors and nuclear receptors: a tripartite communication that tunes innate immunity in large intestine. Cell Microbiol. 2008 May; 10(5):1093-103. PMID: 18088401.
This graph shows the total number of publications by year, by first, middle/unknown, or last author.
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Year | Publications |
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2007 | 1 | 2009 | 1 | 2010 | 2 | 2012 | 2 | 2013 | 1 | 2015 | 2 | 2017 | 3 | 2018 | 2 | 2019 | 1 | 2020 | 3 | 2021 | 1 | 2022 | 1 |
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