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Patrick J. La Riviere

TitleProfessor
InstitutionUniversity of Chicago
DepartmentRadiology-Basic Sciences
AddressChicago IL 60637
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    Collapse Overview 
    Collapse overview
    My lab develops algorithms and algorithm-enabled imaging systems at scales from nanometers (x-ray microscopy) to meters (human computed tomography). Themes that span all scales and modalities include dose reduction, material identification, and orientation imaging.


    Collapse Biography 
    Collapse education and training
    Harvard University, Cambridge, MAA.B.06/1994Physics
    Cambridge University, Cambridge, UK06/1995Philosophy of physics
    University of Chicago, Chicago, ILPh.D.12/2000Medical Physics
    Collapse awards and honors
    2018Distinguished investigator, Academy for Radiology and Biomedical Imaging Research
    2016Fellow, Marine Biological Laboratory
    2005Young Investigator Medical Imaging Scientist Award, IEEE
    1994Lionel deJersey Harvard Scholarship to Cambridge University, Harvard University

    Collapse ORNG Applications 
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    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Wu Y, Han X, Su Y, Glidewell M, Daniels JS, Liu J, Sengupta T, Rey-Suarez I, Fischer R, Patel A, Combs C, Sun J, Wu X, Christensen R, Smith C, Bao L, Sun Y, Duncan LH, Chen J, Pommier Y, Shi YB, Murphy E, Roy S, Upadhyaya A, Colón-Ramos D, La Riviere P, Shroff H. Multiview confocal super-resolution microscopy. Nature. 2021 Nov 26. PMID: 34837071.
      View in: PubMed
    2. La Riviere PJ, Crawford CR. From EMI to AI: a brief history of commercial CT reconstruction algorithms. J Med Imaging (Bellingham). 2021 Sep; 8(5):052111. PMID: 34660842.
      View in: PubMed
    3. Shida JF, Spieglan E, Adams BW, Angelico E, Domurat-Sousa K, Elagin A, Frisch HJ, La Riviere P, Squires AH. Low-Dose High-Resolution TOF-PET Using Ionization-activated Multi-State Low-Z Detector Media. Nucl Instrum Methods Phys Res A. 2021 Nov 21; 1017. PMID: 34690392.
      View in: PubMed
    4. Foxley S, Sampathkumar V, De Andrade V, Trinkle S, Sorokina A, Norwood K, La Riviere P, Kasthuri N. Multi-modal imaging of a single mouse brain over five orders of magnitude of resolution. Neuroimage. 2021 09; 238:118250. PMID: 34116154.
      View in: PubMed
    5. Colón-Ramos DA, La Riviere P, Shroff H, Oldenbourg R. Transforming the development and dissemination of cutting-edge microscopy and computation. Nat Methods. 2019 08; 16(8):667-669. PMID: 31363203.
      View in: PubMed
    6. Ding Y, Vanselow DJ, Yakovlev MA, Katz SR, Lin AY, Clark DP, Vargas P, Xin X, Copper JE, Canfield VA, Ang KC, Wang Y, Xiao X, De Carlo F, van Rossum DB, La Riviere P, Cheng KC. Computational 3D histological phenotyping of whole zebrafish by X-ray histotomography. Elife. 2019 05 07; 8. PMID: 31063133.
      View in: PubMed
    7. Ni K, Lan G, Chan C, Quigley B, Lu K, Aung T, Guo N, La Riviere P, Weichselbaum RR, Lin W. Nanoscale metal-organic frameworks enhance radiotherapy to potentiate checkpoint blockade immunotherapy. Nat Commun. 2018 06 15; 9(1):2351. PMID: 29907739.
      View in: PubMed
    8. Coates MI, Finarelli JA, Sansom IJ, Andreev PS, Criswell KE, Tietjen K, Rivers ML, La Riviere PJ. An early chondrichthyan and the evolutionary assembly of a shark body plan. Proc Biol Sci. 2018 01 10; 285(1870). PMID: 29298937.
      View in: PubMed
    9. Chandler T, Mehta S, Shroff H, Oldenbourg R, La Rivière PJ. Single-fluorophore orientation determination with multiview polarized illumination: modeling and microscope design. Opt Express. 2017 Dec 11; 25(25):31309-31325. PMID: 29245807.
      View in: PubMed
    10. Wu Y, Kumar A, Smith C, Ardiel E, Chandris P, Christensen R, Rey-Suarez I, Guo M, Vishwasrao HD, Chen J, Tang J, Upadhyaya A, La Riviere PJ, Shroff H. Reflective imaging improves spatiotemporal resolution and collection efficiency in light sheet microscopy. Nat Commun. 2017 11 13; 8(1):1452. PMID: 29129912.
      View in: PubMed
    11. Quigley BP, Smith CD, Cheng SH, Souris JS, Pelizzari CA, Chen CT, Lo LW, Reft CS, Wiersma RD, La Riviere PJ. Sensitivity evaluation and selective plane imaging geometry for x-ray-induced luminescence imaging. Med Phys. 2017 Oct; 44(10):5367-5377. PMID: 28703922.
      View in: PubMed
    12. Day KJ, La Rivière PJ, Chandler T, Bindokas VP, Ferrier NJ, Glick BS. Improved deconvolution of very weak confocal signals. F1000Res. 2017; 6:787. PMID: 28868135.
      View in: PubMed
    13. Modgil D, Bindschadler MD, Alessio AM, La Rivière PJ. Variable temporal sampling and tube current modulation for myocardial blood flow estimation from dose-reduced dynamic computed tomography. J Med Imaging (Bellingham). 2017 Apr; 4(2):026002. PMID: 28523283.
      View in: PubMed
    14. Rigie DS, Sanchez AA, La Rivière PJ. Assessment of vectorial total variation penalties on realistic dual-energy CT data. Phys Med Biol. 2017 04 21; 62(8):3284-3298. PMID: 28350547.
      View in: PubMed
    15. Xin X, Clark D, Ang KC, van Rossum DB, Copper J, Xiao X, La Riviere PJ, Cheng KC. Synchrotron microCT imaging of soft tissue in juvenile zebrafish reveals retinotectal projections. Proc SPIE Int Soc Opt Eng. 2017 Feb; 10060. PMID: 32733117.
      View in: PubMed
    16. Mehta SB, McQuilken M, La Riviere PJ, Occhipinti P, Verma A, Oldenbourg R, Gladfelter AS, Tani T. Dissection of molecular assembly dynamics by tracking orientation and position of single molecules in live cells. Proc Natl Acad Sci U S A. 2016 10 18; 113(42):E6352-E6361. PMID: 27679846.
      View in: PubMed
    17. Wu Y, Chandris P, Winter PW, Kim EY, Jaumouillé V, Kumar A, Guo M, Leung JM, Smith C, Rey-Suarez I, Liu H, Waterman CM, Ramamurthi KS, La Riviere PJ, Shroff H. Simultaneous multiview capture and fusion improves spatial resolution in wide-field and light-sheet microscopy. Optica. 2016 Aug 20; 3(8):897-910. PMID: 27761486.
      View in: PubMed
    18. Rigie DS, La Rivière PJ. Optimizing spectral CT parameters for material classification tasks. Phys Med Biol. 2016 06 21; 61(12):4599-622. PMID: 27227430.
      View in: PubMed
    19. Bindschadler M, Modgil D, Branch KR, La Riviere PJ, Alessio AM. Evaluation of static and dynamic perfusion cardiac computed tomography for quantitation and classification tasks. J Med Imaging (Bellingham). 2016 Apr; 3(2):024001. PMID: 27175377.
      View in: PubMed
    20. Modgil D, Rigie DS, Wang Y, Xiao X, Vargas PA, La Rivière PJ. Material identification in x-ray microscopy and micro CT using multi-layer, multi-color scintillation detectors. Phys Med Biol. 2015 Oct 21; 60(20):8025-45. PMID: 26422059.
      View in: PubMed
    21. Groll A, George J, Vargas P, La Rivière PJ, Meng LJ. Element Mapping in Organic Samples Utilizing a Benchtop X-Ray Fluorescence Emission Tomography (XFET) System. IEEE Trans Nucl Sci. 2015 Oct; 62(5):2310-2317. PMID: 26705368.
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    22. Little KJ, La Rivière PJ. Sinogram restoration in computed tomography with an edge-preserving penalty. Med Phys. 2015 Mar; 42(3):1307-20. PMID: 25735286.
      View in: PubMed
    23. Rigie DS, La Rivière PJ. Joint reconstruction of multi-channel, spectral CT data via constrained total nuclear variation minimization. Phys Med Biol. 2015 Mar 07; 60(5):1741-62. PMID: 25658985.
      View in: PubMed
    24. Kaucikas M, Fitzpatrick A, Bryan E, Struve A, Henning R, Kosheleva I, Srajer V, Groenhof G, Van Thor JJ. Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa. Proteins. 2015 Mar; 83(3):397-402. PMID: 25425747.
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    25. Kaucikas M, Fitzpatrick A, Bryan E, Struve A, Henning R, Kosheleva I, Srajer V, Groenhof G, Van Thor JJ. Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa. Proteins. 2015 Mar; 83(3):397-402. PMID: 32601431.
      View in: PubMed
    26. Kaucikas M, Fitzpatrick A, Bryan E, Struve A, Henning R, Kosheleva I, Srajer V, Groenhof G, Van Thor JJ. Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa. Proteins. 2015 Mar; 83(3):397-402. PMID: 21258540.
      View in: PubMed
    27. Kaucikas M, Fitzpatrick A, Bryan E, Struve A, Henning R, Kosheleva I, Srajer V, Groenhof G, Van Thor JJ. Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa. Proteins. 2015 Mar; 83(3):397-402. PMID: 16894995.
      View in: PubMed
    28. Kaucikas M, Fitzpatrick A, Bryan E, Struve A, Henning R, Kosheleva I, Srajer V, Groenhof G, Van Thor JJ. Room temperature crystal structure of the fast switching M159T mutant of the fluorescent protein dronpa. Proteins. 2015 Mar; 83(3):397-402. PMID: 16013726.
      View in: PubMed
    29. Modgil D, Alessio AM, Bindschadler MD, La Rivière PJ. Sinogram smoothing techniques for myocardial blood flow estimation from dose-reduced dynamic computed tomography. J Med Imaging (Bellingham). 2014 Nov 03; 1(3):034004. PMID: 25642441.
      View in: PubMed
    30. Athanassiadis AG, La Rivière PJ, Sidky E, Pelizzari C, Pan X, Jaeger HM. X-ray tomography system to investigate granular materials during mechanical loading. Rev Sci Instrum. 2014 Aug; 85(8):083708. PMID: 25173277.
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    31. Bindschadler M, Modgil D, Branch KR, La Riviere PJ, Alessio AM. Simulation Evaluation of Quantitative Myocardial Perfusion Assessment from Cardiac CT. Proc SPIE Int Soc Opt Eng. 2014 Mar 19; 9033:903303. PMID: 25395812.
      View in: PubMed
    32. Bindschadler M, Modgil D, Branch KR, La Riviere PJ, Alessio AM. Comparison of blood flow models and acquisitions for quantitative myocardial perfusion estimation from dynamic CT. Phys Med Biol. 2014 Apr 07; 59(7):1533-56. PMID: 24614352.
      View in: PubMed
    33. Fu G, Meng LJ, Eng P, Newville M, Vargas P, La Riviere P. Experimental demonstration of novel imaging geometries for x-ray fluorescence computed tomography. Med Phys. 2013 Jun; 40(6):061903. PMID: 23718594.
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    34. Petschke A, La Rivière PJ. Comparison of photoacoustic image reconstruction algorithms using the channelized Hotelling observer. J Biomed Opt. 2013 Feb; 18(2):26009. PMID: 23386197.
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    35. Modgil D, Treeby BE, La Rivière PJ. Photoacoustic image reconstruction in an attenuating medium using singular-value decomposition. J Biomed Opt. 2012 Jun; 17(6):061204. PMID: 22734734.
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    36. Meng LJ, Li N, La Riviere PJ. X-ray Fluorescence Emission Tomography (XFET) with Novel Imaging Geometries - A Monte Carlo Study. IEEE Trans Nucl Sci. 2011 Dec; 58(6):3359-3369. PMID: 22228913.
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    37. Leoni L, Dhyani A, La Riviere P, Vogt S, Lai B, Roman BB. ß-Cell subcellular localization of glucose-stimulated Mn uptake by X-ray fluorescence microscopy: implications for pancreatic MRI. Contrast Media Mol Imaging. 2011 Nov-Dec; 6(6):474-81. PMID: 22144025.
      View in: PubMed
    38. Cheng KC, Xin X, Clark DP, La Riviere P. Whole-animal imaging, gene function, and the Zebrafish Phenome Project. Curr Opin Genet Dev. 2011 Oct; 21(5):620-9. PMID: 21963132.
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    39. Vargas PA, La Rivière PJ. Comparison of sinogram- and image-domain penalized-likelihood image reconstruction estimators. Med Phys. 2011 Aug; 38(8):4811-23. PMID: 21928654.
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    40. Mathew B, Jacobson JR, Berdyshev E, Huang Y, Sun X, Zhao Y, Gerhold LM, Siegler J, Evenoski C, Wang T, Zhou T, Zaidi R, Moreno-Vinasco L, Bittman R, Chen CT, LaRiviere PJ, Sammani S, Lussier YA, Dudek SM, Natarajan V, Weichselbaum RR, Garcia JG. Role of sphingolipids in murine radiation-induced lung injury: protection by sphingosine 1-phosphate analogs. FASEB J. 2011 Oct; 25(10):3388-400. PMID: 21712494.
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    41. Mathew B, Lennon FE, Siegler J, Mirzapoiazova T, Mambetsariev N, Sammani S, Gerhold LM, LaRiviere PJ, Chen CT, Garcia JG, Salgia R, Moss J, Singleton PA. The novel role of the mu opioid receptor in lung cancer progression: a laboratory investigation. Anesth Analg. 2011 Mar; 112(3):558-67. PMID: 21156980.
      View in: PubMed
    42. Modgil D, La Riviére PJ. Optimizing wavelength choice for quantitative optoacoustic imaging using the Cramer-Rao lower bound. Phys Med Biol. 2010 Dec 07; 55(23):7231-51. PMID: 21081820.
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    43. Forthmann P, Koehler T, Defrise M, La Riviere P. Comparing implementations of penalized weighted least-squares sinogram restoration. Med Phys. 2010 Nov; 37(11):5929-38. PMID: 21158306.
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    44. Mathew B, Huang Y, Jacobson JR, Berdyshev E, Gerhold LM, Wang T, Moreno-Vinasco L, Lang G, Zhao Y, Chen CT, LaRiviere PJ, Mauceri H, Sammani S, Husain AN, Dudek SM, Natarajan V, Lussier YA, Weichselbaum RR, Garcia JG. Simvastatin attenuates radiation-induced murine lung injury and dysregulated lung gene expression. Am J Respir Cell Mol Biol. 2011 Mar; 44(3):415-22. PMID: 20508068.
      View in: PubMed
    45. Modgil D, Anastasio MA, La Rivière PJ. Image reconstruction in photoacoustic tomography with variable speed of sound using a higher-order geometrical acoustics approximation. J Biomed Opt. 2010 Mar-Apr; 15(2):021308. PMID: 20459230.
      View in: PubMed
    46. Green AH, Norris JR, Wang J, Xie Z, Zhang HF, La Riviere PJ. In vitro testing of a protease-sensitive contrast agent for optoacoustic imaging. J Biomed Opt. 2010 Mar-Apr; 15(2):021315. PMID: 20459237.
      View in: PubMed
    47. La Riviere P, Vargas P, Xia D, Pan X. Region of interest reconstruction in x-ray fluorescence computed tomography for negligible attenuation. IEEE Trans Nucl Sci. 2010 Feb 01; 57(1):234-241. PMID: 20383286.
      View in: PubMed
    48. Zhang J, Anastasio MA, La Riviere PJ, Wang LV. Effects of different imaging models on least-squares image reconstruction accuracy in photoacoustic tomography. IEEE Trans Med Imaging. 2009 Nov; 28(11):1781-90. PMID: 19884066.
      View in: PubMed
    49. Modgil D, La Rivière PJ. Implementation and comparison of reconstruction algorithms for two-dimensional optoacoustic tomography using a linear array. J Biomed Opt. 2009 Jul-Aug; 14(4):044023. PMID: 19725734.
      View in: PubMed
    50. Sandhu JS, Schmidt RA, La Rivière PJ. Full-field acoustomammography using an acousto-optic sensor. Med Phys. 2009 Jun; 36(6):2324-7. PMID: 19610321.
      View in: PubMed
    51. La Rivière PJ, Vargas P. Correction for resolution nonuniformities caused by anode angulation in computed tomography. IEEE Trans Med Imaging. 2008 Sep; 27(9):1333-41. PMID: 18779068.
      View in: PubMed
    52. Pan X, Siewerdsen J, La Riviere PJ, Kalender WA. Anniversary paper. Development of x-ray computed tomography: the role of medical physics and AAPM from the 1970s to present. Med Phys. 2008 Aug; 35(8):3728-39. PMID: 18777932.
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    53. Pan X, Siewerdsen J, La Riviere PJ, Kalender WA. Anniversary Paper: Development of x-ray computed tomography: The role of Medical Physics and AAPM from the 1970s to present. Med Phys. 2008 Aug; 35(8):3728-3739. PMID: 28525026.
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    54. La Rivière PJ, Vargas PA. Monotonic penalized-likelihood image reconstruction for X-ray fluorescence computed tomography. IEEE Trans Med Imaging. 2006 Sep; 25(9):1117-29. PMID: 16967798.
      View in: PubMed
    55. Yu H, La Rivière PJ, Tang X. Development of computed tomography algorithms. Int J Biomed Imaging. 2006; 2006:39397. PMID: 23165028.
      View in: PubMed
    56. La Rivière PJ, Bian J, Vargas PA. Comparison of quadratic- and median-based roughness penalties for penalized-likelihood sinogram restoration in computed tomography. Int J Biomed Imaging. 2006; 2006:41380. PMID: 23165029.
      View in: PubMed
    57. La Rivière PJ, Zhang J, Anastasio MA. Image reconstruction in optoacoustic tomography for dispersive acoustic media. Opt Lett. 2006 Mar 15; 31(6):781-3. PMID: 16544622.
      View in: PubMed
    58. La Rivière PJ, Billmire DM. Reduction of noise-induced streak artifacts in X-ray computed tomography through spline-based penalized-likelihood sinogram smoothing. IEEE Trans Med Imaging. 2005 Jan; 24(1):105-11. PMID: 15638189.
      View in: PubMed
    59. La Rivière PJ. Approximate analytic reconstruction in x-ray fluorescence computed tomography. Phys Med Biol. 2004 Jun 07; 49(11):2391-405. PMID: 15248585.
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    60. La Rivière PJ, Pan X. Sampling and aliasing consequences of quarter-detector offset use in helical CT. IEEE Trans Med Imaging. 2004 Jun; 23(6):738-49. PMID: 15191148.
      View in: PubMed
    61. Armato SG, Altman MB, La Rivière PJ. Automated detection of lung nodules in CT scans: effect of image reconstruction algorithm. Med Phys. 2003 Mar; 30(3):461-72. PMID: 12674248.
      View in: PubMed
    62. La Rivière PJ, Pan X. Longitudinal aliasing in multislice helical computed tomography: sampling and cone-beam effects. IEEE Trans Med Imaging. 2002 Nov; 21(11):1366-73. PMID: 12575873.
      View in: PubMed
    63. La Rivière PJ, Pan X. Pitch dependence of longitudinal sampling and aliasing effects in multi-slice helical computed tomography (CT). Phys Med Biol. 2002 Aug 07; 47(15):2797-810. PMID: 12200940.
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    64. La Rivière PJ, Pan X. Anti-aliasing weighting functions for single-slice helical CT. IEEE Trans Med Imaging. 2002 Aug; 21(8):978-90. PMID: 12472270.
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    65. La Rivière PJ, Pan X. Favorable noise uniformity properties of Fourier-based interpolation and reconstruction approaches in single-slice helical computed tomography. Med Phys. 2002 Jun; 29(6):943-51. PMID: 12094989.
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    66. La Rivière PJ, Pan X. Fourier-based approach to interpolation in single-slice helical computed tomography. Med Phys. 2001 Mar; 28(3):381-92. PMID: 11318320.
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    67. La Rivière PJ, Pan X. Nonparametric regression sinogram smoothing using a roughness-penalized Poisson likelihood objective function. IEEE Trans Med Imaging. 2000 Aug; 19(8):773-86. PMID: 11055801.
      View in: PubMed
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