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Richard Ree

TitleLecturer
InstitutionField Museum
DepartmentComm: Evolutionary Biology
AddressChicago IL 60637
Email
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    Collapse Overview 
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    Research: Flowering plant evolution and systematics, phylogenetic and macroevolutionary theory, biodiversity informatics


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    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Liu S, Kruse S, Scherler D, Ree RH, Zimmermann HH, Stoof-Leichsenring KR, Epp LS, Mischke S, Herzschuh U. Sedimentary ancient DNA reveals a threat of warming-induced alpine habitat loss to Tibetan Plateau plant diversity. Nat Commun. 2021 05 20; 12(1):2995. PMID: 34016962.
      View in: PubMed
    2. Zhang Q, Ree RH, Salamin N, Xing Y, Silvestro D. Fossil-informed models reveal a Boreotropical origin and divergent evolutionary trajectories in the walnut family (Juglandaceae). Syst Biol. 2021 May 08. PMID: 33964165.
      View in: PubMed
    3. Li Q, Sun H, Boufford DE, Bartholomew B, Fritsch PW, Chen J, Deng T, Ree RH. Grade of Membership models reveal geographical and environmental correlates of floristic structure in a temperate biodiversity hotspot. New Phytol. 2021 May 01. PMID: 33932292.
      View in: PubMed
    4. White DM, Huang JP, Jara-Muñoz OA, MadriñáN S, Ree RH, Mason-Gamer RJ. The Origins of Coca: Museum Genomics Reveals Multiple Independent Domestications from Progenitor Erythroxylum gracilipes. Syst Biol. 2021 Jan 01; 70(1):1-13. PMID: 32979264.
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    5. Nelsen MP, Lücking R, Boyce CK, Lumbsch HT, Ree RH. The macroevolutionary dynamics of symbiotic and phenotypic diversification in lichens. Proc Natl Acad Sci U S A. 2020 09 01; 117(35):21495-21503. PMID: 32796103.
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    6. Ding WN, Ree RH, Spicer RA, Xing YW. Ancient orogenic and monsoon-driven assembly of the world's richest temperate alpine flora. Science. 2020 07 31; 369(6503):578-581. PMID: 32732426.
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    7. Nelsen MP, Lücking R, Boyce CK, Lumbsch HT, Ree RH. No support for the emergence of lichens prior to the evolution of vascular plants. Geobiology. 2020 01; 18(1):3-13. PMID: 31729136.
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    8. Nelsen MP, Ree RH, Moreau CS. Ant-plant interactions evolved through increasing interdependence. Proc Natl Acad Sci U S A. 2018 11 27; 115(48):12253-12258. PMID: 30420513.
      View in: PubMed
    9. Alcantara S, Ree RH, Mello-Silva R. Accelerated diversification and functional trait evolution in Velloziaceae reveal new insights into the origins of the campos rupestres' exceptional floristic richness. Ann Bot. 2018 06 28; 122(1):165-180. PMID: 29800276.
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    10. Xing Y, Ree RH. Uplift-driven diversification in the Hengduan Mountains, a temperate biodiversity hotspot. Proc Natl Acad Sci U S A. 2017 04 25; 114(17):E3444-E3451. PMID: 28373546.
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    11. Moeller DA, Briscoe Runquist RD, Moe AM, Geber MA, Goodwillie C, Cheptou PO, Eckert CG, Elle E, Johnston MO, Kalisz S, Ree RH, Sargent RD, Vallejo-Marin M, Winn AA. Global biogeography of mating system variation in seed plants. Ecol Lett. 2017 Mar; 20(3):375-384. PMID: 28116770.
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    12. Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD, McTavish EJ, Midford PE, Owen CL, Ree RH, Rees JA, Soltis DE, Williams T, Cranston KA. Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proc Natl Acad Sci U S A. 2015 Oct 13; 112(41):12764-9. PMID: 26385966.
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    13. Yu WB, Liu ML, Wang H, Mill RR, Ree RH, Yang JB, Li DZ. Towards a comprehensive phylogeny of the large temperate genus Pedicularis (Orobanchaceae), with an emphasis on species from the Himalaya-Hengduan Mountains. BMC Plant Biol. 2015 Jul 11; 15:176. PMID: 26159907.
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    14. Meseguer AS, Lobo JM, Ree R, Beerling DJ, Sanmartín I. Integrating fossils, phylogenies, and niche models into biogeography to reveal ancient evolutionary history: the case of Hypericum (hypericaceae). Syst Biol. 2015 Mar; 64(2):215-32. PMID: 25398444.
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    15. Winger BM, Barker FK, Ree RH. Temperate origins of long-distance seasonal migration in New World songbirds. Proc Natl Acad Sci U S A. 2014 Aug 19; 111(33):12115-20. PMID: 25092321.
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    16. Tkach N, Ree RH, Kuss P, Röser M, Hoffmann MH. High mountain origin, phylogenetics, evolution, and niche conservatism of arctic lineages in the hemiparasitic genus Pedicularis (Orobanchaceae). Mol Phylogenet Evol. 2014 Jul; 76:75-92. PMID: 24631857.
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    17. Alcantara S, Ree RH, Martins FR, Lohmann LG. The effect of phylogeny, environment and morphology on communities of a lianescent clade (Bignonieae-Bignoniaceae) in Neotropical biomes. PLoS One. 2014; 9(3):e90177. PMID: 24594706.
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    18. Elkington BG, Sydara K, Newsome A, Hwang CH, Lankin DC, Simmler C, Napolitano JG, Ree R, Graham JG, Gyllenhaal C, Bouamanivong S, Souliya O, Pauli GF, Franzblau SG, Soejarto DD. New finding of an anti-TB compound in the genus Marsypopetalum (Annonaceae) from a traditional herbal remedy of Laos. J Ethnopharmacol. 2014 Feb 03; 151(2):903-11. PMID: 24333958.
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    19. Eaton DA, Ree RH. Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae). Syst Biol. 2013 Sep; 62(5):689-706. PMID: 23652346.
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    20. Rubin BE, Ree RH, Moreau CS. Inferring phylogenies from RAD sequence data. PLoS One. 2012; 7(4):e33394. PMID: 22493668.
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    21. Winn AA, Elle E, Kalisz S, Cheptou PO, Eckert CG, Goodwillie C, Johnston MO, Moeller DA, Ree RH, Sargent RD, Vallejo-Marín M. Analysis of inbreeding depression in mixed-mating plants provides evidence for selective interference and stable mixed mating. Evolution. 2011 Dec; 65(12):3339-59. PMID: 22133210.
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    22. Goldberg EE, Lancaster LT, Ree RH. Phylogenetic inference of reciprocal effects between geographic range evolution and diversification. Syst Biol. 2011 Jul; 60(4):451-65. PMID: 21551125.
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    23. Vila R, Bell CD, Macniven R, Goldman-Huertas B, Ree RH, Marshall CR, Bálint Z, Johnson K, Benyamini D, Pierce NE. Phylogeny and palaeoecology of Polyommatus blue butterflies show Beringia was a climate-regulated gateway to the New World. Proc Biol Sci. 2011 Sep 22; 278(1719):2737-44. PMID: 21270033.
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    24. Salvo G, Ho SY, Rosenbaum G, Ree R, Conti E. Tracing the temporal and spatial origins of island endemics in the Mediterranean region: a case study from the citrus family (Ruta L., Rutaceae). Syst Biol. 2010 Dec; 59(6):705-22. PMID: 20841320.
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    25. Branco S, Ree RH. Serpentine soils do not limit mycorrhizal fungal diversity. PLoS One. 2010 Jul 23; 5(7):e11757. PMID: 20668696.
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    26. Goodwillie C, Sargent RD, Eckert CG, Elle E, Geber MA, Johnston MO, Kalisz S, Moeller DA, Ree RH, Vallejo-Marin M, Winn AA. Correlated evolution of mating system and floral display traits in flowering plants and its implications for the distribution of mating system variation. . 2010 Jan; 185(1):311-21. PMID: 19807872.
      View in: PubMed
    27. Xie L, Wagner WL, Ree RH, Berry PE, Wen J. Molecular phylogeny, divergence time estimates, and historical biogeography of Circaea (Onagraceae) in the Northern Hemisphere. Mol Phylogenet Evol. 2009 Dec; 53(3):995-1009. PMID: 19751838.
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    28. Eckert CG, Kalisz S, Geber MA, Sargent R, Elle E, Cheptou PO, Goodwillie C, Johnston MO, Kelly JK, Moeller DA, Porcher E, Ree RH, Vallejo-Marín M, Winn AA. Plant mating systems in a changing world. Trends Ecol Evol. 2010 Jan; 25(1):35-43. PMID: 19683360.
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    29. Santos JC, Coloma LA, Summers K, Caldwell JP, Ree R, Cannatella DC. Amazonian amphibian diversity is primarily derived from late Miocene Andean lineages. PLoS Biol. 2009 Mar 10; 7(3):e56. PMID: 19278298.
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    30. Clark JR, Ree RH, Alfaro ME, King MG, Wagner WL, Roalson EH. A comparative study in ancestral range reconstruction methods: retracing the uncertain histories of insular lineages. Syst Biol. 2008 Oct; 57(5):693-707. PMID: 18853357.
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    31. Yue J, Feldheim KA, Sun H, Ree R. Ten microsatellite loci from Solms-laubachia eurycarpa (Brassicaceae). Mol Ecol Resour. 2008 Sep; 8(5):1023-5. PMID: 21585960.
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    32. Ree RH, Smith SA. Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Syst Biol. 2008 Feb; 57(1):4-14. PMID: 18253896.
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    33. Sargent RD, Goodwillie C, Kalisz S, Ree RH. Phylogenetic evidence for a flower size and number trade-off. Am J Bot. 2007 Dec; 94(12):2059-62. PMID: 21636399.
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    34. Kalisz S, Ree RH, Sargent RD. Linking floral symmetry genes to breeding system evolution. Trends Plant Sci. 2006 Dec; 11(12):568-73. PMID: 17097332.
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    35. Fine PV, Ree RH. Evidence for a time-integrated species-area effect on the latitudinal gradient in tree diversity. Am Nat. 2006 Dec; 168(6):796-804. PMID: 17109321.
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    36. Blanco O, Crespo A, Ree RH, Lumbsch HT. Major clades of parmelioid lichens (Parmeliaceae, Ascomycota) and the evolution of their morphological and chemical diversity. Mol Phylogenet Evol. 2006 Apr; 39(1):52-69. PMID: 16481204.
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    37. Ree RH, Moore BR, Webb CO, Donoghue MJ. A likelihood framework for inferring the evolution of geographic range on phylogenetic trees. Evolution. 2005 Nov; 59(11):2299-311. PMID: 16396171.
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    38. Ree RH. Detecting the historical signature of key innovations using stochastic models of character evolution and cladogenesis. Evolution. 2005 Feb; 59(2):257-65. PMID: 15807412.
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    39. Ree RH, Citerne HL, Lavin M, Cronk QC. Heterogeneous selection on LEGCYC paralogs in relation to flower morphology and the phylogeny of Lupinus (Leguminosae). Mol Biol Evol. 2004 Feb; 21(2):321-31. PMID: 14660696.
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    40. Sanderson MJ, Driskell AC, Ree RH, Eulenstein O, Langley S. Obtaining maximal concatenated phylogenetic data sets from large sequence databases. Mol Biol Evol. 2003 Jul; 20(7):1036-42. PMID: 12777519.
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    41. Ree RH, Donoghue MJ. Step matrices and the interpretation of homoplasy. Syst Biol. 1998 Dec; 47(4):582-8. PMID: 12066303.
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