The University of Chicago Header Logo

John Bates

TitleLecturer
InstitutionField Museum
DepartmentCommittee on Evolutionary Biology
AddressChicago IL 60637
Email
vCardDownload vCard

    Collapse Overview 
    Collapse overview
    Our lab studies the evolution of birds at the level of species and populations using comparative genetic and morphologic approaches based on extended museum specimens and places that evolution in the context of landscape and climate change.

    Collapse Biography 
    Collapse education and training
    Louisiana State University, Baton Rouge, LAPh.D.12/1993Zoology
    University of Arizona, Tucson, AZM.S.05/1987Evol. and Evol. Biology
    University of Arizona, Tucson, AZB.S.06/1983Biology

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Hains T, Catanach T, Pirro S, Bates J, Hackett S. The Complete Genome Sequences of 22 Species of Owls (Strigiformes, Aves). Biodivers Genomes. 2025; 2025. PMID: 39830368; PMCID: PMC11741190.
      Citations:    
    2. Catanach T, Hains T, Pirro S, Bates J, Hackett S. The Complete Genome Sequences of 30 Species of Falcons (Falconiformes, Aves). Biodivers Genomes. 2024; 2024. PMID: 39741639; PMCID: PMC11687367.
      Citations:    
    3. Catanach T, Hains T, Pirro S, Bates J, Hackett S. The Complete Genome Sequences of 31 Species of Hawks (Accipitriformes, Aves). Biodivers Genomes. 2024; 2024. PMID: 39686972; PMCID: PMC11649319.
      Citations:    
    4. Kelley DI, Sato H, Ecker M, Burton CA, Capurucho JMG, Bates J. Niche-dependent forest and savanna fragmentation in Tropical South America during the Last Glacial Maximum. NPJ Biodivers. 2024 Sep 11; 3(1):23. PMID: 39261588; PMCID: PMC11391077.
      Citations: 2     
    5. Mendez SND, Hains T, Pirro S, Bates J, Hackett S. The Complete Genome Sequence of Chlorophonia sclateri (Fringillidae, Passeriformes), the Puerto Rican Euphonia. Biodivers Genomes. 2024; 2024. PMID: 39309409; PMCID: PMC11414600.
      Citations:    
    6. Lele A, Drucker JR, Hains T, Pirro S, Bates J, Bonaccorso E. The Complete Genome Sequences of 37 Bird Species from the Ecuadorian Andes. Biodivers Genomes. 2024; 2024. PMID: 38817349; PMCID: PMC11138963.
      Citations:    
    7. Bodt L, Hains T, Coldren D, Pirro S, Bates J, Hackett S. The Complete Genome Sequences of 23 Finch Species (Fringillidae, Passeriformes). Biodivers Genomes. 2024; 2024. PMID: 38817350; PMCID: PMC11138578.
      Citations:    
    8. He P, Song Y, Jin W, Li Y, Xia K, Kim SB, Dwivedi R, Farrag M, Bates J, Pomin VH, Wang C, Linhardt RJ, Dordick JS, Zhang F. Marine sulfated glycans inhibit the interaction of heparin with S-protein of SARS-CoV-2 Omicron XBB variant. Glycoconj J. 2024 04; 41(2):163-174. PMID: 38642280; PMCID: PMC12185386.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    9. Herman RW, Clucas G, Younger J, Bates J, Robinson B, Reddy S, Stepanuk J, O'Brien K, Veeramah K, Lynch HJ. Whole genome sequencing reveals stepping-stone dispersal buffered against founder effects in a range expanding seabird. Mol Ecol. 2024 Mar; 33(6):e17282. PMID: 38299701.
      Citations:    Fields:    Translation:HumansAnimals
    10. Hains T, Pirro S, Bates J, Hackett S, Capurucho JMG. The Complete Genome Sequences of 19 Species of Snipes (Scolopacidae, Charadriiformes, Aves). Biodivers Genomes. 2023; 2023. PMID: 37153853; PMCID: PMC10162776.
      Citations:    
    11. Trost B, Thiruvahindrapuram B, Chan AJS, Engchuan W, Higginbotham EJ, Howe JL, Loureiro LO, Reuter MS, Roshandel D, Whitney J, Zarrei M, Bookman M, Somerville C, Shaath R, Abdi M, Aliyev E, Patel RV, Nalpathamkalam T, Pellecchia G, Hamdan O, Kaur G, Wang Z, MacDonald JR, Wei J, Sung WWL, Lamoureux S, Hoang N, Selvanayagam T, Deflaux N, Geng M, Ghaffari S, Bates J, Young EJ, Ding Q, Shum C, D'Abate L, Bradley CA, Rutherford A, Aguda V, Apresto B, Chen N, Desai S, Du X, Fong MLY, Pullenayegum S, Samler K, Wang T, Ho K, Paton T, Pereira SL, Herbrick JA, Wintle RF, Fuerth J, Noppornpitak J, Ward H, Magee P, Al Baz A, Kajendirarajah U, Kapadia S, Vlasblom J, Valluri M, Green J, Seifer V, Quirbach M, Rennie O, Kelley E, Masjedi N, Lord C, Szego MJ, Zawati MH, Lang M, Strug LJ, Marshall CR, Costain G, Calli K, Iaboni A, Yusuf A, Ambrozewicz P, Gallagher L, Amaral DG, Brian J, Elsabbagh M, Georgiades S, Messinger DS, Ozonoff S, Sebat J, Sjaarda C, Smith IM, Szatmari P, Zwaigenbaum L, Kushki A, Frazier TW, Vorstman JAS, Fakhro KA, Fernandez BA, Lewis MES, Weksberg R, Fiume M, Yuen RKC, Anagnostou E, Sondheimer N, Glazer D, Hartley DM, Scherer SW. Genomic architecture of autism from comprehensive whole-genome sequence annotation. Cell. 2022 11 10; 185(23):4409-4427.e18. PMID: 36368308; PMCID: PMC10726699.
      Citations: 125     Fields:    Translation:Humans
    12. Hains T, Pirro S, O'Neill K, Valez J, Speed N, Clubb S, Oleksyk T, Bates J, Hackett S. The Complete Genome Sequences of 94 Species of Parrots (Psittaciformes, Aves). Biodivers Genomes. 2022 Nov; 2022. PMID: 36405343; PMCID: PMC9671223.
      Citations: 4     
    13. Hains T, Pirro S, Bates J, Hackett S. The Complete Genome Sequence of Cyanopsitta spixii, the Spix's Macaw. Biodivers Genomes. 2022; 2022. PMID: 36467626; PMCID: PMC9718372.
      Citations:    
    14. Hardisty AR, Ellwood ER, Nelson G, Zimkus B, Buschbom J, Addink W, Rabeler RK, Bates J, Bentley A, Fortes JAB, Hansen S, Macklin JA, Mast AR, Miller JT, Monfils AK, Paul DL, Wallis E, Webster M. Digital Extended Specimens: Enabling an Extensible Network of Biodiversity Data Records as Integrated Digital Objects on the Internet. Bioscience. 2022 Oct; 72(10):978-987. PMID: 36196222; PMCID: PMC9525127.
      Citations: 23     Fields:    
    15. Adler Miserendino RA, Meyer RS, Zimkus BM, Bates J, Silvestri L, Taylor C, Blumenfield T, Srigyan M, Pandey JL. The Case for Community Self-Governance on Access and Benefit Sharing of Digital Sequence Information. Bioscience. 2022 May; 72(5):405-408. PMID: 35592054; PMCID: PMC9113315.
      Citations: 2     Fields:    
    16. Colella JP, Bates J, Carrion Bonilla C, Constable I, Dunnum JL, Greiman S, Hoberg EP, Liphardt SW, Losos E, Lutz HL, Peterson AT, Struminger B, Thompson CW, Weksler M, Cook JA, Burneo SF, Camacho MA, D'Elía G, Lessa E, Londoño-Gaviria M, Ordóñez Garza N, Martin ML, Ribas CC, Torres-Pérez F. Leveraging natural history biorepositories as a global, decentralized, pathogen surveillance network. PLoS Pathog. 2021 06; 17(6):e1009583. PMID: 34081744; PMCID: PMC8174688.
      Citations: 39     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    17. Cook JA, Arai S, Armién B, Bates J, Bonilla CAC, Cortez MBS, Dunnum JL, Ferguson AW, Johnson KM, Khan FAA, Paul DL, Reeder DM, Revelez MA, Simmons NB, Thiers BM, Thompson CW, Upham NS, Vanhove MPM, Webala PW, Weksler M, Yanagihara R, Soltis PS. Integrating Biodiversity Infrastructure into Pathogen Discovery and Mitigation of Emerging Infectious Diseases. Bioscience. 2020 Jul 01; 70(6):531-534. PMID: 32665736; PMCID: PMC7340541.
      Citations: 29     Fields:    
    18. DuBay SG, Wu Y, Scott GR, Qu Y, Liu Q, Smith JH, Xin C, Hart Reeve A, Juncheng C, Meyer D, Wang J, Johnson J, Cheviron ZA, Lei F, Bates J. Life history predicts flight muscle phenotype and function in birds. J Anim Ecol. 2020 05; 89(5):1262-1276. PMID: 32124424.
      Citations: 7     Fields:    Translation:Animals
    19. Lendemer J, Thiers B, Monfils AK, Zaspel J, Ellwood ER, Bentley A, LeVan K, Bates J, Jennings D, Contreras D, Lagomarsino L, Mabee P, Ford LS, Guralnick R, Gropp RE, Revelez M, Cobb N, Seltmann K, Aime MC. Corrigendum: The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education. Bioscience. 2020 Feb 01; 70(2):195. PMID: 32063649; PMCID: PMC7012773.
      Citations: 2     Fields:    
    20. Lendemer J, Thiers B, Monfils AK, Zaspel J, Ellwood ER, Bentley A, LeVan K, Bates J, Jennings D, Contreras D, Lagomarsino L, Mabee P, Ford LS, Guralnick R, Gropp RE, Revelez M, Cobb N, Seltmann K, Aime MC. The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education. Bioscience. 2020 Jan 01; 70(1):23-30. PMID: 31949317; PMCID: PMC6956879.
      Citations: 61     Fields:    
    21. Bates JM, Bicudo TC, Sacek V, de Almeida RP, Ribas CC. Andean Tectonics and Mantle Dynamics as a Pervasive Influence on Amazonian Ecosystem. Sci Rep. 2019 11 14; 9(1):16879. PMID: 31728046; PMCID: PMC6856153.
      Citations: 7     Fields:    
    22. Acar IH, Frohn S, Prokasky A, Molfese VJ, Bates JE. Examining the Associations Between Performance Based and Ratings of Focused Attention in Toddlers: Are We Measuring the Same Constructs? Infant Child Dev. 2019 Jan-Feb; 28(1). PMID: 30853857; PMCID: PMC6402356.
      Citations: 7     
    23. Fecchio A, Svensson-Coelho M, Bell J, Ellis VA, Medeiros MC, Trisos CH, Blake JG, Loiselle BA, Tobias JA, Fanti R, Coffey ED, DE Faria IP, Pinho JB, Felix G, Braga EM, Anciães M, Tkach V, Bates J, Witt C, Weckstein JD, Ricklefs RE, Farias IP. Host associations and turnover of haemosporidian parasites in manakins (Aves: Pipridae). Parasitology. 2017 Jun; 144(7):984-993. PMID: 28290270.
      Citations: 9     Fields:    Translation:Animals
    24. Lawson LP, Bates JM, Menegon M, Loader SP. Divergence at the edges: peripatric isolation in the montane spiny throated reed frog complex. BMC Evol Biol. 2015 Jul 01; 15:128. PMID: 26126573; PMCID: PMC4487588.
      Citations: 9     Fields:    Translation:Animals
    25. Winger BM, Bates JM. The tempo of trait divergence in geographic isolation: avian speciation across the Marañon Valley of Peru. Evolution. 2015 Mar; 69(3):772-87. PMID: 25611790.
      Citations: 23     Fields:    Translation:Animals
    Bates's Networks
    Click the
    Explore
    buttons for more information and interactive visualizations!
    Concepts (64)
    Explore
    _
    Co-Authors (1)
    Explore
    _
    Similar People (60)
    Explore
    _
    Same Department Expand Description
    Explore
    _
    Physical Neighbors
    _