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Shannon Hackett

TitleLecturer
InstitutionField Museum
DepartmentCommittee on Evolutionary Biology
AddressChicago IL 60637
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    Research: Avian molecular systematics and evolution, neotropical biogeography, phylogenetic analysis
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Nachman MW, Beckman EJ, Bowie RC, Cicero C, Conroy CJ, Dudley R, Hayes TB, Koo MS, Lacey EA, Martin CH, McGuire JA, Patton JL, Spencer CL, Tarvin RD, Wake MH, Wang IJ, Achmadi A, Álvarez-Castañeda ST, Andersen MJ, Arroyave J, Austin CC, Barker FK, Barrow LN, Barrowclough GF, Bates J, Bauer AM, Bell KC, Bell RC, Bronson AW, Brown RM, Burbrink FT, Burns KJ, Cadena CD, Cannatella DC, Castoe TA, Chakrabarty P, Colella JP, Cook JA, Cracraft JL, Davis DR, Davis Rabosky AR, D'Elía G, Dumbacher JP, Dunnum JL, Edwards SV, Esselstyn JA, Faivovich J, Fjeldså J, Flores-Villela OA, Ford K, Fuchs J, Fujita MK, Good JM, Greenbaum E, Greene HW, Hackett S, Hamidy A, Hanken J, Haryoko T, Hawkins MT, Heaney LR, Hillis DM, Hollingsworth BD, Hornsby AD, Hosner PA, Irham M, Jansa S, Jiménez RA, Joseph L, Kirchman JJ, LaDuc TJ, Leaché AD, Lessa EP, López-Fernández H, Mason NA, McCormack JE, McMahan CD, Moyle RG, Ojeda RA, Olson LE, Kin Onn C, Parenti LR, Parra-Olea G, Patterson BD, Pauly GB, Pavan SE, Peterson AT, Poe S, Rabosky DL, Raxworthy CJ, Reddy S, Rico-Guevara A, Riyanto A, Rocha LA, Ron SR, Rovito SM, Rowe KC, Rowley J, Ruane S, Salazar-Valenzuela D, Shultz AJ, Sidlauskas B, Sikes DS, Simmons NB, Stiassny MLJ, Streicher JW, Stuart BL, Summers AP, Tavera J, Teta P, Thompson CW, Timm RM, Torres-Carvajal O, Voelker G, Voss RS, Winker K, Witt C, Wommack EA, Zink RM. Specimen collection is essential for modern science. PLoS Biol. 2023 Nov; 21(11):e3002318. PMID: 37992027; PMCID: PMC10664955.
      Citations: 1     Fields:    Translation:Animals
    2. Eliason CM, Mellenthin LE, Hains T, McCullough JM, Pirro S, Andersen MJ, Hackett SJ. Genomic signatures of convergent shifts to plunge-diving behavior in birds. Commun Biol. 2023 10 24; 6(1):1011. PMID: 37875535; PMCID: PMC10598022.
      Citations: 1     Translation:Animals
    3. Hains T, Pirro S, Bates J, Hackett S, Capurucho JMG. The Complete Genome Sequences of 19 Species of Snipes (Scolopacidae, Charadriiformes, Aves). Biodivers Genomes. 2023; 2023. PMID: 37153853; PMCID: PMC10162776.
      Citations:    
    4. Eliason CM, McCullough JM, Hackett SJ, Andersen MJ. Complex plumages spur rapid color diversification in kingfishers (Aves: Alcedinidae). Elife. 2023 04 21; 12. PMID: 37083474; PMCID: PMC10121218.
      Citations: 1     Fields:    Translation:HumansAnimals
    5. Skeen HR, Willard DE, Jones AW, Winger BM, Gyllenhaal EF, Tsuru BR, Hackett SJ, Novembre J. Intestinal microbiota of Nearctic-Neotropical migratory birds vary more over seasons and years than between host species. Mol Ecol. 2023 06; 32(12):3290-3307. PMID: 36974685.
      Citations: 1     Fields:    Translation:Animals
    6. Eliason CM, Cooper JC, Hackett SJ, Zahnle E, Maddox JD, Hains T, Hauber ME, Bates JM, Pequeño Saco TZ. Interspecific hybridization explains rapid gorget colour divergence in Heliodoxa hummingbirds (Aves: Trochilidae). R Soc Open Sci. 2023 Mar; 10(3):221603. PMID: 36866078; PMCID: PMC9974296.
      Citations: 1     
    7. Hains T, Pirro S, Bates JM, Hackett SJ. The Complete Genome Sequence of Conuropsis carolinensis, the Carolina Parakeet. Biodivers Genomes. 2022; 2022. PMID: 36632172; PMCID: PMC9830951.
      Citations:    
    8. Eliason CM, Hains T, McCullough J, Andersen MJ, Hackett SJ. Genomic novelty within a "great speciator" revealed by a high-quality reference genome of the collared kingfisher (Todiramphus chloris collaris). G3 (Bethesda). 2022 11 04; 12(11). PMID: 36156134; PMCID: PMC9635628.
      Citations: 1     Fields:    Translation:Animals
    9. Hains T, Pirro S, O'Neill K, Valez J, Speed N, Clubb S, Oleksyk T, Bates J, Hackett S. The Complete Genome Sequences of 94 Species of Parrots (Psittaciformes, Aves). Biodivers Genomes. 2022 Nov; 2022. PMID: 36405343; PMCID: PMC9671223.
      Citations: 2     
    10. Hains T, Pirro S, Bates J, Hackett S. The Complete Genome Sequence of Cyanopsitta spixii, the Spix's Macaw. Biodivers Genomes. 2022; 2022. PMID: 36467626; PMCID: PMC9718372.
      Citations:    
    11. Skeen HR, Cooper NW, Hackett SJ, Bates JM, Marra PP. Repeated sampling of individuals reveals impact of tropical and temperate habitats on microbiota of a migratory bird. Mol Ecol. 2021 11; 30(22):5900-5916. PMID: 34580952.
      Citations: 7     Fields:    Translation:HumansAnimals
    12. Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MS, Puetz L, Cavill E, Eckhart L, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Bunce M, Burt DW, Cracraft J, Meng G, Hackett SJ, Ryan PG, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Shapiro B, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Urrutia AO, Liu Y, Campana MG, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Ketterson ED, Fidler AE, Friis G, Battley PF, Cox MP, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Mello CV, Weir JT, Haussler D, Li Q, Yang H, Wang J, Lei F, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang G, Andreu-Sánchez S, Ribeiro ÂM, Fjeldså J, Tietze DT, Fuchs J, Jønsson KA, Vignal A, Soares AER, González-Solís J, Dalén L, Székely T, Corvelo A, Mouritsen H, Thiele N, Milá B, Parody-Merino ÁM, Lima NCB, Prosdocimi F, Vasconcelos ATR. Author Correction: Dense sampling of bird diversity increases power of comparative genomics. Nature. 2021 Apr; 592(7856):E24. PMID: 33833441; PMCID: PMC8081657.
      Citations: 1     Fields:    
    13. McNew SM, Barrow LN, Williamson JL, Galen SC, Skeen HR, DuBay SG, Gaffney AM, Johnson AB, Schmitt CJ, Smiley A, Bates JM, Hackett SJ, Witt CC, Bautista E, Ordoñez P, Valqui T. Contrasting drivers of diversity in hosts and parasites across the tropical Andes. Proc Natl Acad Sci U S A. 2021 03 23; 118(12). PMID: 33731475; PMCID: PMC8000519.
      Citations: 7     Fields:    Translation:Animals
    14. Eliason CM, McCullough JM, Andersen MJ, Hackett SJ. Accelerated Brain Shape Evolution Is Associated with Rapid Diversification in an Avian Radiation. Am Nat. 2021 05; 197(5):576-591. PMID: 33908824.
      Citations: 7     Fields:    Translation:Animals
    15. Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MS, Puetz L, Cavill E, Eckhart L, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Bunce M, Burt DW, Cracraft J, Meng G, Hackett SJ, Ryan PG, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Shapiro B, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Urrutia AO, Liu Y, Campana MG, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Delmore K, Franke A, Hoeppner MP, Krone O, Fudickar AM, Ketterson ED, Fidler AE, Friis G, Battley PF, Cox MP, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Mello CV, Weir JT, Haussler D, Li Q, Yang H, Wang J, Lei F, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang G, Andreu-Sánchez S, Ribeiro ÂM, Fjeldså J, Tietze DT, Fuchs J, Jønsson KA, Vignal A, Soares AER, González-Solís J, Dalén L, Székely T, Corvelo A, Mouritsen H, Thiele N, Liedvogel M, Milá B, Parody-Merino ÁM, Lima NCB, Prosdocimi F, Vasconcelos ATR. Dense sampling of bird diversity increases power of comparative genomics. Nature. 2020 11; 587(7833):252-257. PMID: 33177665; PMCID: PMC7759463.
      Citations: 121     Fields:    Translation:HumansAnimals
    16. Eliason CM, Straker L, Jung S, Hackett SJ. Morphological innovation and biomechanical diversity in plunge-diving birds. Evolution. 2020 07; 74(7):1514-1524. PMID: 32452015.
      Citations: 4     Fields:    Translation:Animals
    17. Song SJ, Sanders JG, Metcalf J, Amato K, Taylor MW, Mazel F, Lutz HL, Winker K, Graves GR, Humphrey G, Gilbert JA, Hackett SJ, White KP, Skeen HR, Kurtis SM, Withrow J, Braile T, Miller M, McCracken KG, Maley JM, Ezenwa VO, Williams A, Blanton JM, McKenzie VJ, Knight R, Delsuc F. Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats. mBio. 2020 01 07; 11(1). PMID: 31911491; PMCID: PMC6946802.
      Citations: 121     Fields:    Translation:Animals
    18. Eliason CM, Andersen MJ, Hackett SJ. Using Historical Biogeography Models to Study Color Pattern Evolution. Syst Biol. 2019 09 01; 68(5):755-766. PMID: 30785196.
      Citations: 1     Fields:    Translation:Animals
    19. Kyriazis CC, Alam B, Wjodyla M, Hackett S, Hosner P, Mays HL, Heaney LR, Reddy S. Colonization and diversification of the white-browed shortwing (Aves: Muscicapidae: Brachypteryx montana) in the Philippines. Mol Phylogenet Evol. 2018 04; 121:121-131. PMID: 29305243.
      Citations:    Fields:    Translation:Animals
    20. Reddy S, Kimball RT, Pandey A, Hosner PA, Braun MJ, Hackett SJ, Han KL, Harshman J, Huddleston CJ, Kingston S, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Witt CC, Yuri T, Braun EL. Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling. Syst Biol. 2017 Sep 01; 66(5):857-879. PMID: 28369655.
      Citations: 67     Fields:    Translation:Animals
    21. Lutz HL, Patterson BD, Kerbis Peterhans JC, Stanley WT, Webala PW, Gnoske TP, Hackett SJ, Stanhope MJ. Diverse sampling of East African haemosporidians reveals chiropteran origin of malaria parasites in primates and rodents. Mol Phylogenet Evol. 2016 06; 99:7-15. PMID: 26975691.
      Citations: 26     Fields:    Translation:Animals
    22. Block NL, Goodman SM, Hackett SJ, Bates JM, Raherilalao MJ. Potential merger of ancient lineages in a passerine bird discovered based on evidence from host-specific ectoparasites. Ecol Evol. 2015 Sep; 5(17):3743-55. PMID: 26380702; PMCID: PMC4567877.
      Citations: 3     
    23. Lutz HL, Hochachka WM, Engel JI, Bell JA, Tkach VV, Bates JM, Hackett SJ, Weckstein JD. Parasite prevalence corresponds to host life history in a diverse assemblage of afrotropical birds and haemosporidian parasites. PLoS One. 2015; 10(4):e0121254. PMID: 25853491; PMCID: PMC4390322.
      Citations: 41     Fields:    Translation:AnimalsPHPublic Health
    24. Reddy S, Driskell A, Rabosky DL, Hackett SJ, Schulenberg TS. Diversification and the adaptive radiation of the vangas of Madagascar. Proc Biol Sci. 2012 May 22; 279(1735):2062-71. PMID: 22217720; PMCID: PMC3311898.
      Citations: 23     Fields:    Translation:Animals
    25. Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Witt CC, Yuri T. Homoplastic microinversions and the avian tree of life. BMC Evol Biol. 2011 May 25; 11:141. PMID: 21612607; PMCID: PMC3123225.
      Citations: 12     Fields:    Translation:AnimalsCells
    26. Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T. Are transposable element insertions homoplasy free?: an examination using the avian tree of life. Syst Biol. 2011 May; 60(3):375-86. PMID: 21303823.
      Citations: 21     Fields:    Translation:AnimalsCells
    27. Johansson US, Bowie RC, Hackett SJ, Schulenberg TS. The phylogenetic affinities of Crossley's babbler (Mystacornis crossleyi): adding a new niche to the vanga radiation of Madagascar. Biol Lett. 2008 Dec 23; 4(6):677-80. PMID: 18832056; PMCID: PMC2615815.
      Citations: 1     Fields:    Translation:Animals
    28. Kimball RT, Braun EL, Barker FK, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Han KL, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Smith JV, Witt CC, Yuri T. A well-tested set of primers to amplify regions spread across the avian genome. Mol Phylogenet Evol. 2009 Mar; 50(3):654-60. PMID: 19084073.
      Citations: 23     Fields:    Translation:Animals
    29. Harshman J, Braun EL, Braun MJ, Huddleston CJ, Bowie RC, Chojnowski JL, Hackett SJ, Han KL, Kimball RT, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Steppan SJ, Witt CC, Yuri T. Phylogenomic evidence for multiple losses of flight in ratite birds. Proc Natl Acad Sci U S A. 2008 Sep 09; 105(36):13462-7. PMID: 18765814; PMCID: PMC2533212.
      Citations: 50     Fields:    Translation:AnimalsCells
    30. Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T. A phylogenomic study of birds reveals their evolutionary history. Science. 2008 Jun 27; 320(5884):1763-8. PMID: 18583609.
      Citations: 485     Fields:    Translation:Animals
    31. Tobias JA, Bates JM, Hackett SJ, Seddon N. Comment on "The latitudinal gradient in recent speciation and extinction rates of birds and mammals". Science. 2008 Feb 15; 319(5865):901; author reply 901. PMID: 18276872.
      Citations: 12     Fields:    Translation:Animals
    32. Hackett S, Feldheim K, Alvey M. Genes and genius: the inheritance of Gregor Mendel. DNA Cell Biol. 2006 Dec; 25(12):655-8. PMID: 17184166.
      Citations:    Fields:    
    33. Cheviron ZA, Hackett SJ, Brumfield RT. Sequence variation in the coding region of the melanocortin-1 receptor gene (MC1R) is not associated with plumage variation in the blue-crowned manakin (Lepidothrix coronata). Proc Biol Sci. 2006 Jul 07; 273(1594):1613-8. PMID: 16769631; PMCID: PMC1704083.
      Citations: 16     Fields:    Translation:AnimalsCells
    34. Bowie RC, Hackett SJ, Bates JM, Crowe TM, Fjeldså J. Coalescent models reveal the relative roles of ancestral polymorphism, vicariance, and dispersal in shaping phylogeographical structure of an African montane forest robin. Mol Phylogenet Evol. 2006 Jan; 38(1):171-88. PMID: 16024259.
      Citations: 23     Fields:    Translation:Animals
    35. Cheviron ZA, Hackett SJ, Capparella AP. Complex evolutionary history of a Neotropical lowland forest bird (Lepidothrix coronata) and its implications for historical hypotheses of the origin of Neotropical avian diversity. Mol Phylogenet Evol. 2005 Aug; 36(2):338-57. PMID: 15955514.
      Citations: 17     Fields:    Translation:Animals
    36. Bowie RC, Hackett SJ, Crowe TM, Fjeldså J. Molecular evolution in space and through time: mtDNA phylogeography of the Olive Sunbird (Nectarinia olivacea/obscura) throughout continental Africa. Mol Phylogenet Evol. 2004 Oct; 33(1):56-74. PMID: 15324839.
      Citations: 7     Fields:    Translation:AnimalsCells
    37. Marks BD, Hackett SJ, Capparella AP. Historical relationships among Neotropical lowland forest areas of endemism as determined by mitochondrial DNA sequence variation within the Wedge-billed Woodcreeper (Aves: Dendrocolaptidae: Glyphorynchus spirurus). Mol Phylogenet Evol. 2002 Jul; 24(1):153-67. PMID: 12128035.
      Citations: 11     Fields:    Translation:Animals
    38. Burns KJ, Hackett SJ, Klein NK. Phylogenetic relationships and morphological diversity in Darwin's finches and their relatives. Evolution. 2002 Jun; 56(6):1240-52. PMID: 12144023.
      Citations: 27     Fields:    Translation:Animals
    39. Hackett SJ. Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves). Mol Phylogenet Evol. 1996 Apr; 5(2):368-82. PMID: 8728395.
      Citations: 30     Fields:    Translation:AnimalsCells
    40. Hackett SJ, Griffiths CS, Bates JM, Klein NK. Re: A commentary on the use of sequence data for phylogeny reconstruction. Mol Phylogenet Evol. 1995 Sep; 4(3):350-6. PMID: 8845969.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
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