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Marc Parisien

TitlePostdoctoral Fellow
InstitutionUniversity of Chicago
DepartmentBiochem/Mol Bio
AddressChicago IL 60637
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    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Piltonen M, Krokhotin A, Parisien M, Bérubé P, Djambazian H, Sladek R, Dokholyan NV, Shabalina SA, Diatchenko L. Correction to: Alternative Splicing of Opioid Receptor Genes Shows a Conserved Pattern for 6TM Receptor Variants. Cell Mol Neurobiol. 2021 Jul; 41(5):1057. PMID: 33201419.
      View in: PubMed
    2. Freidin MB, Tsepilov YA, Stanaway IB, Meng W, Hayward C, Smith BH, Khoury S, Parisien M, Bortsov A, Diatchenko L, Børte S, Winsvold BS, Brumpton BM, Zwart JA, Aulchenko YS, Suri P, Williams FMK. Sex- and age-specific genetic analysis of chronic back pain. Pain. 2021 04 01; 162(4):1176-1187. PMID: 33021770.
      View in: PubMed
    3. Khoury S, Wang QP, Parisien M, Gris P, Bortsov AV, Linnstaedt SD, McLean SA, Tungate AS, Sofer T, Lee J, Louie T, Redline S, Kaunisto MA, Kalso EA, Munter HM, Nackley AG, Slade GD, Smith SB, Zaykin DV, Fillingim RB, Ohrbach R, Greenspan JD, Maixner W, Neely GG, Diatchenko L. Multi-ethnic GWAS and meta-analysis of sleep quality identify MPP6 as a novel gene that functions in sleep center neurons. Sleep. 2021 03 12; 44(3). PMID: 33034629.
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    4. Kupari J, Usoskin D, Parisien M, Lou D, Hu Y, Fatt M, Lönnerberg P, Spångberg M, Eriksson B, Barkas N, Kharchenko PV, Loré K, Khoury S, Diatchenko L, Ernfors P. Single cell transcriptomics of primate sensory neurons identifies cell types associated with chronic pain. Nat Commun. 2021 03 08; 12(1):1510. PMID: 33686078.
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    5. van Tilburg MAL, Parisien M, Boles RG, Drury GL, Smith-Voudouris J, Verma V, Khoury S, Chabot-Doré AJ, Nackley AG, Smith SB, Whitehead WE, Zolnoun DA, Slade GD, Tchivileva I, Maixner W, Diatchenko L. A genetic polymorphism that is associated with mitochondrial energy metabolism increases risk of fibromyalgia. Pain. 2020 12; 161(12):2860-2871. PMID: 32658146.
      View in: PubMed
    6. Upadhyay U, Zhuang GZ, Diatchenko L, Parisien M, Kang Y, Sarantopoulos KD, Martin ER, Smith SB, Maixner W, Levitt RC. Reversion mutation of cDNA CA8-204 minigene construct produces a truncated functional peptide that regulates calcium release in vitro and produces profound analgesia in vivo. Mamm Genome. 2020 12; 31(9-12):287-294. PMID: 33247772.
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    7. Piltonen M, Krokhotin A, Parisien M, Bérubé P, Djambazian H, Sladek R, Dokholyan NV, Shabalina SA, Diatchenko L. Alternative Splicing of Opioid Receptor Genes Shows a Conserved Pattern for 6TM Receptor Variants. Cell Mol Neurobiol. 2021 Jul; 41(5):1039-1055. PMID: 33010019.
      View in: PubMed
    8. Parisien MA, Barber QE, Hirsch KG, Stockdale CA, Erni S, Wang X, Arseneault D, Parks SA. Author Correction: Fire deficit increases wildfire risk for many communities in the Canadian boreal forest. Nat Commun. 2020 07 28; 11(1):3855. PMID: 32724035.
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    9. Verma V, Khoury S, Parisien M, Cho C, Maixner W, Martin LJ, Diatchenko L. The dichotomous role of epiregulin in pain. Pain. 2020 05; 161(5):1052-1064. PMID: 31917773.
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    10. Parisien MA, Barber QE, Hirsch KG, Stockdale CA, Erni S, Wang X, Arseneault D, Parks SA. Fire deficit increases wildfire risk for many communities in the Canadian boreal forest. Nat Commun. 2020 05 01; 11(1):2121. PMID: 32358496.
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    11. Benavides R, Vsevolozhskaya O, Cattaneo S, Zaykin D, Brenton A, Parisien M, Verma V, Khoury S, Gilron I, Diatchenko L. A functional polymorphism in the ATP-Binding Cassette B1 transporter predicts pharmacologic response to combination of nortriptyline and morphine in neuropathic pain patients. Pain. 2020 03; 161(3):619-629. PMID: 31738228.
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    12. Gentile ME, Li Y, Robertson A, Shah K, Fontes G, Kaufmann E, Polese B, Khan N, Parisien M, Munter HM, Mandl JN, Diatchenko L, Divangahi M, King IL. NK cell recruitment limits tissue damage during an enteric helminth infection. Mucosal Immunol. 2020 03; 13(2):357-370. PMID: 31776431.
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    13. Zhou KI, Shi H, Lyu R, Wylder AC, Matuszek Z, Pan JN, He C, Parisien M, Pan T. Regulation of Co-transcriptional Pre-mRNA Splicing by m6A through the Low-Complexity Protein hnRNPG. Mol Cell. 2019 10 03; 76(1):70-81.e9. PMID: 31445886.
      View in: PubMed
    14. Zorina-Lichtenwalter K, Lichtenwalter RN, Zaykin DV, Parisien M, Gravel S, Bortsov A, Diatchenko L. A study in scarlet: MC1R as the main predictor of red hair and exemplar of the flip-flop effect. Hum Mol Genet. 2019 06 15; 28(12):2093-2106. PMID: 30657907.
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    15. Upadhyay U, Zhuang GZ, Diatchenko L, Parisien M, Kang Y, Sarantopoulos KD, Martin ER, Smith SB, Maixner W, Levitt RC. Profound analgesia is associated with a truncated peptide resulting from tissue specific alternative splicing of DRG CA8-204 regulated by an exon-level cis-eQTL. PLoS Genet. 2019 06; 15(6):e1008226. PMID: 31199789.
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    16. Slade GD, Rosen JD, Ohrbach R, Greenspan JD, Fillingim RB, Parisien M, Khoury S, Diatchenko L, Maixner W, Bair E. Anatomical selectivity in overlap of chronic facial and bodily pain. Pain Rep. 2019 May-Jun; 4(3):e729. PMID: 31583346.
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    17. Parisien M, Samoshkin A, Tansley SN, Piltonen MH, Martin LJ, El-Hachem N, Dagostino C, Allegri M, Mogil JS, Khoutorsky A, Diatchenko L. Genetic pathway analysis reveals a major role for extracellular matrix organization in inflammatory and neuropathic pain. Pain. 2019 Apr; 160(4):932-944. PMID: 30763288.
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    18. Smith SB, Parisien M, Bair E, Belfer I, Chabot-Doré AJ, Gris P, Khoury S, Tansley S, Torosyan Y, Zaykin DV, Bernhardt O, de Oliveira Serrano P, Gracely RH, Jain D, Järvelin MR, Kaste LM, Kerr KF, Kocher T, Lähdesmäki R, Laniado N, Laurie CC, Laurie CA, Männikkö M, Meloto CB, Nackley AG, Nelson SC, Pesonen P, Ribeiro-Dasilva MC, Rizzatti-Barbosa CM, Sanders AE, Schwahn C, Sipilä K, Sofer T, Teumer A, Mogil JS, Fillingim RB, Greenspan JD, Ohrbach R, Slade GD, Maixner W, Diatchenko L. Genome-wide association reveals contribution of MRAS to painful temporomandibular disorder in males. Pain. 2019 Mar; 160(3):579-591. PMID: 30431558.
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    19. Schwartz MH, Wang H, Pan JN, Clark WC, Cui S, Eckwahl MJ, Pan DW, Parisien M, Owens SM, Cheng BL, Martinez K, Xu J, Chang EB, Pan T, Eren AM. Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis. Nat Commun. 2018 12 17; 9(1):5353. PMID: 30559359.
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    20. Piltonen M, Parisien M, Grégoire S, Chabot-Doré AJ, Jafarnejad SM, Bérubé P, Djambazian H, Sladek R, Geneau G, Willett P, Stone LS, Shabalina SA, Diatchenko L. Alternative Splicing of the Delta-Opioid Receptor Gene Suggests Existence of New Functional Isoforms. Mol Neurobiol. 2019 Apr; 56(4):2855-2869. PMID: 30066306.
      View in: PubMed
    21. Wang X, Matuszek Z, Huang Y, Parisien M, Dai Q, Clark W, Schwartz MH, Pan T. Queuosine modification protects cognate tRNAs against ribonuclease cleavage. RNA. 2018 10; 24(10):1305-1313. PMID: 29970597.
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    22. Meloto CB, Benavides R, Lichtenwalter RN, Wen X, Tugarinov N, Zorina-Lichtenwalter K, Chabot-Doré AJ, Piltonen MH, Cattaneo S, Verma V, Klares R, Khoury S, Parisien M, Diatchenko L. Human pain genetics database: a resource dedicated to human pain genetics research. Pain. 2018 04; 159(4):749-763. PMID: 29300278.
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    23. Zorina-Lichtenwalter K, Parisien M, Diatchenko L. Genetic studies of human neuropathic pain conditions: a review. Pain. 2018 03; 159(3):583-594. PMID: 29240606.
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    24. Liu N, Zhou KI, Parisien M, Dai Q, Diatchenko L, Pan T. N6-methyladenosine alters RNA structure to regulate binding of a low-complexity protein. Nucleic Acids Res. 2017 Jun 02; 45(10):6051-6063. PMID: 28334903.
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    25. Peng C, Li L, Zhang MD, Bengtsson Gonzales C, Parisien M, Belfer I, Usoskin D, Abdo H, Furlan A, Häring M, Lallemend F, Harkany T, Diatchenko L, Hökfelt T, Hjerling-Leffler J, Ernfors P. miR-183 cluster scales mechanical pain sensitivity by regulating basal and neuropathic pain genes. Science. 2017 06 16; 356(6343):1168-1171. PMID: 28572455.
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    26. Parisien M, Khoury S, Chabot-Doré AJ, Sotocinal SG, Slade GD, Smith SB, Fillingim RB, Ohrbach R, Greenspan JD, Maixner W, Mogil JS, Belfer I, Diatchenko L. Effect of Human Genetic Variability on Gene Expression in Dorsal Root Ganglia and Association with Pain Phenotypes. Cell Rep. 2017 05 30; 19(9):1940-1952. PMID: 28564610.
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    27. Huang W, Ravikumar KM, Parisien M, Yang S. Theoretical modeling of multiprotein complexes by iSPOT: Integration of small-angle X-ray scattering, hydroxyl radical footprinting, and computational docking. J Struct Biol. 2016 12; 196(3):340-349. PMID: 27496803.
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    28. Parisien MA. Science can map a solution to a fast-burning problem. Nature. 2016 06 16; 534(7607):297. PMID: 27306154.
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    29. Gao XH, Krokowski D, Guan BJ, Bederman I, Majumder M, Parisien M, Diatchenko L, Kabil O, Willard B, Banerjee R, Wang B, Bebek G, Evans CR, Fox PL, Gerson SL, Hoppel CL, Liu M, Arvan P, Hatzoglou M. Quantitative H2S-mediated protein sulfhydration reveals metabolic reprogramming during the integrated stress response. Elife. 2015 Nov 23; 4:e10067. PMID: 26595448.
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    30. Meloto CB, Segall SK, Smith S, Parisien M, Shabalina SA, Rizzatti-Barbosa CM, Gauthier J, Tsao D, Convertino M, Piltonen MH, Slade GD, Fillingim RB, Greenspan JD, Ohrbach R, Knott C, Maixner W, Zaykin D, Dokholyan NV, Reenilä I, Männistö PT, Diatchenko L. COMT gene locus: new functional variants. Pain. 2015 Oct; 156(10):2072-2083. PMID: 26207649.
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    31. Zhou KI, Parisien M, Dai Q, Liu N, Diatchenko L, Sachleben JR, Pan T. N(6)-Methyladenosine Modification in a Long Noncoding RNA Hairpin Predisposes Its Conformation to Protein Binding. J Mol Biol. 2016 Feb 27; 428(5 Pt A):822-833. PMID: 26343757.
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    32. Liu N, Dai Q, Zheng G, He C, Parisien M, Pan T. N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions. Nature. 2015 Feb 26; 518(7540):560-4. PMID: 25719671.
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    33. Parks SA, Parisien MA, Miller C, Dobrowski SZ. Fire activity and severity in the western US vary along proxy gradients representing fuel amount and fuel moisture. PLoS One. 2014; 9(6):e99699. PMID: 24941290.
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    34. Saikia M, Jobava R, Parisien M, Putnam A, Krokowski D, Gao XH, Guan BJ, Yuan Y, Jankowsky E, Feng Z, Hu GF, Pusztai-Carey M, Gorla M, Sepuri NB, Pan T, Hatzoglou M. Angiogenin-cleaved tRNA halves interact with cytochrome c, protecting cells from apoptosis during osmotic stress. Mol Cell Biol. 2014 Jul; 34(13):2450-63. PMID: 24752898.
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    35. Parisien M, Wang X, Pan T. Diversity of human tRNA genes from the 1000-genomes project. RNA Biol. 2013 Dec; 10(12):1853-67. PMID: 24448271.
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    36. Wang X, Lu Z, Gomez A, Hon GC, Yue Y, Han D, Fu Y, Parisien M, Dai Q, Jia G, Ren B, Pan T, He C. N6-methyladenosine-dependent regulation of messenger RNA stability. Nature. 2014 Jan 02; 505(7481):117-20. PMID: 24284625.
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    37. Liu N, Parisien M, Dai Q, Zheng G, He C, Pan T. Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA. RNA. 2013 Dec; 19(12):1848-56. PMID: 24141618.
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    38. Parisien M, Wang X, Perdrizet G, Lamphear C, Fierke CA, Maheshwari KC, Wilde MJ, Sosnick TR, Pan T. Discovering RNA-protein interactome by using chemical context profiling of the RNA-protein interface. Cell Rep. 2013 May 30; 3(5):1703-13. PMID: 23665222.
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    39. Saikia M, Krokowski D, Guan BJ, Ivanov P, Parisien M, Hu GF, Anderson P, Pan T, Hatzoglou M. Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress. J Biol Chem. 2012 Dec 14; 287(51):42708-25. PMID: 23086926.
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    40. Parisien M, Freed KF, Sosnick TR. On docking, scoring and assessing protein-DNA complexes in a rigid-body framework. PLoS One. 2012; 7(2):e32647. PMID: 22393431.
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    41. Parisien M, Major F. Determining RNA three-dimensional structures using low-resolution data. J Struct Biol. 2012 Sep; 179(3):252-60. PMID: 22387042.
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    42. Parisien M, Yi C, Pan T. Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons. RNA. 2012 Mar; 18(3):355-67. PMID: 22282339.
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    43. Lerman YV, Kennedy SD, Shankar N, Parisien M, Major F, Turner DH. NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions. RNA. 2011 Sep; 17(9):1664-77. PMID: 21778280.
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    44. Wang Z, Parisien M, Scheets K, Miller WA. The cap-binding translation initiation factor, eIF4E, binds a pseudoknot in a viral cap-independent translation element. Structure. 2011 Jun 08; 19(6):868-80. PMID: 21645857.
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    45. Yang S, Parisien M, Major F, Roux B. RNA structure determination using SAXS data. J Phys Chem B. 2010 Aug 12; 114(31):10039-48. PMID: 20684627.
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    46. Cruz-Toledo J, Dumontier M, Parisien M, Major F. RKB: a Semantic Web knowledge base for RNA. J Biomed Semantics. 2010 Jun 22; 1 Suppl 1:S2. PMID: 20626922.
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    47. Parisien M, Cruz JA, Westhof E, Major F. New metrics for comparing and assessing discrepancies between RNA 3D structures and models. RNA. 2009 Oct; 15(10):1875-85. PMID: 19710185.
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    48. Krawchuk MA, Moritz MA, Parisien MA, Van Dorn J, Hayhoe K. Global pyrogeography: the current and future distribution of wildfire. PLoS One. 2009; 4(4):e5102. PMID: 19352494.
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    49. Parisien M, Major F. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data. Nature. 2008 Mar 06; 452(7183):51-5. PMID: 18322526.
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    50. Parisien M, Major F. Ranking the factors that contribute to protein beta-sheet folding. Proteins. 2007 Sep 01; 68(4):824-9. PMID: 17523189.
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    51. Kim YK, Furic L, Parisien M, Major F, DesGroseillers L, Maquat LE. Staufen1 regulates diverse classes of mammalian transcripts. EMBO J. 2007 Jun 06; 26(11):2670-81. PMID: 17510634.
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    52. Parisien M, Major F. A new catalog of protein beta-sheets. Proteins. 2005 Nov 15; 61(3):545-58. PMID: 16184601.
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    53. Caron E, Côté C, Parisien M, Major F, Perreault C. Identification of two distinct intracellular localization signals in STT3-B. Arch Biochem Biophys. 2006 Jan 01; 445(1):108-14. PMID: 16297371.
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    54. Parisien M, Major F, Peitsch M. A protein conformational search space defined by secondary structure contacts. Pac Symp Biocomput. 1998; 425-36. PMID: 9697201.
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