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Jonathan Ozik

TitleSenior Scientist Affiliated with Public Health Sciences, Consortium for Advanced Science and Engineering (UChicago CASE)
InstitutionUniversity of Chicago
DepartmentArgonne National Laboratory
AddressChicago IL 60637
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    R01AI149779     (DAY, KAREN PATRICIA;KORAM, KWADWO ANSAH;ODURO, ABRAHAM REXFORD;OZIK, JONATHAN ;PASCUAL, MERCEDES)Jul 19, 2019 - Jun 30, 2024
    NIH
    Temporal strain structure and response to interventions in a high endemicity region of Plasmodium falciparum
    Role: Co-Principal Investigator
    R01GM121600     (DAHARI, HAREL)Aug 15, 2017 - Jul 31, 2022
    NIH
    Computational discovery of effective hepatitis C intervention strategies
    Role: Co-Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Chiu R, Tatara E, Mackesy-Amiti ME, Page K, Ozik J, Boodram B, Dahari H, Gutfraind A. Reducing Sample Size While Improving Equity in Vaccine Clinical Trials: A Machine Learning-Based Recruitment Methodology with Application to Improving Trials of Hepatitis C Virus Vaccines in People Who Inject Drugs. Healthcare (Basel). 2024 Mar 13; 12(6). PMID: 38540608; PMCID: PMC10970332.
      Citations:    
    2. Pineda-Antunez C, Seguin C, van Duuren L, Knudsen AB, Davidi B, de Lima PN, Rutter C, Kuntz KM, Lansdorp-Vogelaar I, Collier N, Ozik J, Alarid-Escudero F, Pineda-Antunez C, Seguin C, van Duuren LA, Knudsen AB, Davidi B, Nascimento de Lima P, Rutter C, Kuntz KM, Lansdorp-Vogelaar I, Collier N, Ozik J, Alarid-Escudero F, Pineda-Antunez C, Seguin C, van Duuren LA, Davidi B, de Lima PN, Rutter C, Kuntz KM, Lansdorp-Vogelaar I, Collier N, Ozik J, Alarid-Escudero F. Emulator-based Bayesian calibration of the CISNET colorectal cancer models. medRxiv. 2024 Feb 05. PMID: 36909607; PMCID: PMC10002763.
      Citations:    
    3. Hotton AL, Lee F, Sheeler D, Ozik J, Collier N, Edali M, Ardestani BM, Brewer R, Schrode KM, Fujimoto K, Harawa NT, Schneider JA, Khanna AS. Impact of post-incarceration care engagement interventions on HIV transmission among young Black men who have sex with men and their sexual partners: an agent-based network modeling study. Lancet Reg Health Am. 2023 Dec; 28:100628. PMID: 38026447; PMCID: PMC10679934.
      Citations:    
    4. Tatara E, Lin Q, Ozik J, Kolak M, Collier N, Halpern D, Anselin L, Dahari H, Boodram B, Schneider J, Tatara E, Lin Q, Ozik J, Kolak M, Collier N, Halpern D, Anselin L, Dahari H, Boodram B, Schneider J. Spatial inequities in access to medications for treatment of opioid use disorder highlight scarcity of methadone providers under counterfactual scenarios. medRxiv. 2023 Nov 08. PMID: 37292847; PMCID: PMC10246029.
      Citations:    
    5. Tilmon S, Nyenhuis S, Solomonides A, Barbarioli B, Bhargava A, Birz S, Bouzein K, Cardenas C, Carlson B, Cohen E, Dillon E, Furner B, Huang Z, Johnson J, Krishnan N, Lazenby K, Li K, Makhni S, Miler D, Ozik J, Santos C, Sleiman M, Solway J, Krishnan S, Volchenboum S. Sociome Data Commons: A scalable and sustainable platform for investigating the full social context and determinants of health. J Clin Transl Sci. 2023; 7(1):e255. PMID: 38229897; PMCID: PMC10789989.
      Citations:    
    6. Hailegiorgis A, Ishida Y, Collier N, Imamura M, Shi Z, Reinharz V, Tsuge M, Barash D, Hiraga N, Yokomichi H, Tateno C, Ozik J, Uprichard SL, Chayama K, Dahari H. Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics. PLoS Comput Biol. 2023 08; 19(8):e1011309. PMID: 37535676; PMCID: PMC10426918.
      Citations:    Fields:    Translation:AnimalsCells
    7. Nascimento de Lima P, van den Puttelaar R, Hahn AI, Harlass M, Collier N, Ozik J, Zauber AG, Lansdorp-Vogelaar I, Rutter CM. Projected long-term effects of colorectal cancer screening disruptions following the COVID-19 pandemic. Elife. 2023 05 02; 12. PMID: 37129468; PMCID: PMC10154022.
      Citations: 3     Fields:    Translation:HumansPHPublic Health
    8. de Lima PN, Rutter CM, Maerzluft C, Ozik J, Collier N. Robustness Analysis of Colorectal Cancer Colonoscopy Screening Strategies. medRxiv. 2023 Mar 09. PMID: 36945378; PMCID: PMC10029022.
      Citations:    
    9. Collier N, Ozik J. DISTRIBUTED AGENT-BASED SIMULATION WITH REPAST4PY. Proc Winter Simul Conf. 2022 Dec; 2022:192-206. PMID: 36777718; PMCID: PMC9912342.
      Citations:    
    10. de Lima PN, van den Puttelaar R, Hahn AI, Harlass M, Collier N, Ozik J, Zauber AG, Lansdorp-Vogelaar I, Rutter CM. Unequal Recovery in Colorectal Cancer Screening Following the COVID-19 Pandemic: A Comparative Microsimulation Analysis. medRxiv. 2022 Dec 26. PMID: 36597528; PMCID: PMC9810216.
      Citations:    
    11. Lee F, Khanna AS, Hallmark CJ, Lavingia R, McNeese M, Zhao J, McNeese ML, Khuwaja S, Ardestani BM, Collier N, Ozik J, Hotton AL, Harawa NT, Schneider JA, Fujimoto K. Expanding Medicaid to Reduce Human Immunodeficiency Virus Transmission in Houston, Texas: Insights From a Modeling Study. Med Care. 2023 01 01; 61(1):12-19. PMID: 36477617; PMCID: PMC9733589.
      Citations:    Fields:    Translation:HumansCells
    12. de Lima PN, Vardavas R, Baker L, Ringel JS, Lempert RJ, Rutter CM, Ozik J. Reopening Under Uncertainty: Stress-Testing California's COVID-19 Exit Strategy. Rand Health Q. 2022 Jun; 9(3):24. PMID: 35837515; PMCID: PMC9242558.
      Citations:    
    13. Hotton AL, Ozik J, Kaligotla C, Collier N, Stevens A, Khanna AS, MacDonell MM, Wang C, LePoire DJ, Chang YS, Martinez-Moyano IJ, Mucenic B, Pollack HA, Schneider JA, Macal C. Impact of changes in protective behaviors and out-of-household activities by age on COVID-19 transmission and hospitalization in Chicago, Illinois. Ann Epidemiol. 2022 12; 76:165-173. PMID: 35728733; PMCID: PMC9212859.
      Citations: 1     Fields:    Translation:Humans
    14. Alarid-Escudero F, Knudsen AB, Ozik J, Collier N, Kuntz KM. Characterization and Valuation of the Uncertainty of Calibrated Parameters in Microsimulation Decision Models. Front Physiol. 2022; 13:780917. PMID: 35615677; PMCID: PMC9124835.
      Citations: 1     
    15. Rutter CM, Nascimento de Lima P, Lee JK, Ozik J. Too Good to Be True? Evaluation of Colonoscopy Sensitivity Assumptions Used in Policy Models. Cancer Epidemiol Biomarkers Prev. 2022 04 01; 31(4):775-782. PMID: 34906968; PMCID: PMC8983491.
      Citations: 2     Fields:    Translation:Humans
    16. Tatara E, Gutfraind A, Collier NT, Echevarria D, Cotler SJ, Major ME, Ozik J, Dahari H, Boodram B. Modeling hepatitis C micro-elimination among people who inject drugs with direct-acting antivirals in metropolitan Chicago. PLoS One. 2022; 17(3):e0264983. PMID: 35271634; PMCID: PMC8912265.
      Citations: 5     Fields:    Translation:HumansCells
    17. van Duuren LA, Ozik J, Spliet R, Collier NT, Lansdorp-Vogelaar I, Meester RGS. An Evolutionary Algorithm to Personalize Stool-Based Colorectal Cancer Screening. Front Physiol. 2021; 12:718276. PMID: 35153804; PMCID: PMC8826712.
      Citations:    
    18. Boodram B, Mackesy-Amiti ME, Khanna A, Brickman B, Dahari H, Ozik J. People who inject drugs in metropolitan Chicago: A meta-analysis of data from 1997-2017 to inform interventions and computational modeling toward hepatitis C microelimination. PLoS One. 2022; 17(1):e0248850. PMID: 35020725; PMCID: PMC8754317.
      Citations: 4     Fields:    Translation:Humans
    19. DeYoreo M, Rutter CM, Ozik J, Collier N. Sequentially calibrating a Bayesian microsimulation model to incorporate new information and assumptions. BMC Med Inform Decis Mak. 2022 01 12; 22(1):12. PMID: 35022005; PMCID: PMC8756687.
      Citations: 2     Fields:    
    20. Schneider JA, Hayford C, Hotton A, Tabidze I, Wertheim JO, Ramani S, Hallmark C, Morgan E, Janulis P, Khanna A, Ozik J, Fujimoto K, Flores R, D'aquila R, Benbow N. Do partner services linked to molecular clusters yield people with viremia or new HIV? AIDS. 2022 05 01; 36(6):845-852. PMID: 34873085; PMCID: PMC9397139.
      Citations: 1     Fields:    Translation:Humans
    21. Getz M, Wang Y, An G, Asthana M, Becker A, Cockrell C, Collier N, Craig M, Davis CL, Faeder JR, Ford Versypt AN, Mapder T, Gianlupi JF, Glazier JA, Hamis S, Heiland R, Hillen T, Hou D, Islam MA, Jenner AL, Kurtoglu F, Larkin CI, Liu B, Macfarlane F, Maygrundter P, Morel PA, Narayanan A, Ozik J, Pienaar E, Rangamani P, Saglam AS, Shoemaker JE, Smith AM, Weaver JJA, Macklin P. Iterative community-driven development of a SARS-CoV-2 tissue simulator. bioRxiv. 2021 Nov 10. PMID: 32511322; PMCID: PMC7239052.
      Citations: 2     
    22. Schneider JA, Taylor BG, Hotton AL, Lamuda PA, Ozik J, Lin Q, Flanagan E, Tuyet Pho M, Kolak M, Brewer R, Pagkas-Bather J, Pollack HA. National variability in Americans' COVID-19 protective behaviors: Implications for vaccine roll-out. PLoS One. 2021; 16(11):e0259257. PMID: 34739498; PMCID: PMC8570526.
      Citations: 5     Fields:    Translation:HumansCellsPHPublic Health
    23. Nascimento de Lima P, Lempert R, Vardavas R, Baker L, Ringel J, Rutter CM, Ozik J, Collier N. Reopening California: Seeking robust, non-dominated COVID-19 exit strategies. PLoS One. 2021; 16(10):e0259166. PMID: 34699570; PMCID: PMC8547648.
      Citations: 6     Fields:    Translation:HumansPHPublic Health
    24. Lindau ST, Makelarski JA, Kaligotla C, Abramsohn EM, Beiser DG, Chou C, Collier N, Huang ES, Macal CM, Ozik J, Tung EL. Building and experimenting with an agent-based model to study the population-level impact of CommunityRx, a clinic-based community resource referral intervention. PLoS Comput Biol. 2021 10; 17(10):e1009471. PMID: 34695116; PMCID: PMC8568099.
      Citations: 1     Fields:    Translation:Humans
    25. Tatara E, Schneider J, Quasebarth M, Collier N, Pollack H, Boodram B, Friedman S, Salisbury-Afshar E, Mackesy-Amiti ME, Ozik J. Application of Distributed Agent-based Modeling to Investigate Opioid Use Outcomes in Justice Involved Populations. IEEE Int Symp Parallel Distrib Process Workshops Phd Forum. 2021 Jun; 2021:989-997. PMID: 35865008; PMCID: PMC9297575.
      Citations: 1     
    26. Khanna AS, Edali M, Ozik J, Collier N, Hotton A, Skwara A, Ardestani BM, Brewer R, Fujimoto K, Harawa N, Schneider JA. Projecting the number of new HIV infections to formulate the "Getting to Zero" strategy in Illinois, USA. Math Biosci Eng. 2021 05 06; 18(4):3922-3938. PMID: 34198418; PMCID: PMC8281377.
      Citations: 1     Fields:    Translation:HumansPHPublic Health
    27. de Lima PN, Lempert R, Vardavas R, Baker L, Ringel J, Rutter CM, Ozik J, Collier N. Reopening California : Seeking Robust, Non-Dominated COVID-19 Exit Strategies. medRxiv. 2021 Apr 28. PMID: 33948599; PMCID: PMC8095206.
      Citations:    
    28. Cockrell C, Ozik J, Collier N, An G. Nested active learning for efficient model contextualization and parameterization: pathway to generating simulated populations using multi-scale computational models. Simulation. 2021 Apr; 97(4):287-296. PMID: 34744189; PMCID: PMC8570577.
      Citations: 6     
    29. Pagkas-Bather J, Ozik J, Millett G, Schneider JA. The last Black man with HIV in San Francisco: the potential role of gentrification on HIV getting to zero achievements. Lancet HIV. 2020 12; 7(12):e853-e856. PMID: 33275918.
      Citations: 3     Fields:    Translation:HumansPHPublic Health
    30. Hotton AL, Chen YT, Schumm P, Khanna AS, Brewer R, Skaathun B, Issema RS, Ramani S, Ramachandran A, Ozik J, Fujimoto K, Harawa NT, Schneider JA. Socio-Structural and Neighborhood Predictors of Incident Criminal Justice Involvement in a Population-Based Cohort of Young Black MSM and Transgender Women. J Urban Health. 2020 10; 97(5):623-634. PMID: 32180129; PMCID: PMC7560631.
      Citations: 7     Fields:    Translation:Humans
    31. Tatara E, Collier NT, Ozik J, Gutfraind A, Cotler SJ, Dahari H, Major M, Boodram B. MULTI-OBJECTIVE MODEL EXPLORATION OF HEPATITIS C ELIMINATION IN AN AGENT-BASED MODEL OF PEOPLE WHO INJECT DRUGS. Proc Winter Simul Conf. 2019 Dec; 2019:1008-1019. PMID: 32624641; PMCID: PMC7335458.
      Citations: 4     
    32. Rutter CM, Ozik J, DeYoreo M, Collier N. MICROSIMULATION MODEL CALIBRATION USING INCREMENTAL MIXTURE APPROXIMATE BAYESIAN COMPUTATION. Ann Appl Stat. 2019 Dec; 13(4):2189-2212. PMID: 34691351; PMCID: PMC8534811.
      Citations: 19     
    33. Tung EL, Abramsohn EM, Boyd K, Makelarski JA, Beiser DG, Chou C, Huang ES, Ozik J, Kaligotla C, Lindau ST. Impact of a Low-Intensity Resource Referral Intervention on Patients' Knowledge, Beliefs, and Use of Community Resources: Results from the CommunityRx Trial. J Gen Intern Med. 2020 03; 35(3):815-823. PMID: 31749028; PMCID: PMC7080911.
      Citations: 19     Fields:    Translation:Humans
    34. Khanna AS, Schneider JA, Collier N, Ozik J, Issema R, di Paola A, Skwara A, Ramachandran A, Webb J, Brewer R, Cunningham W, Hilliard C, Ramani S, Fujimoto K, Harawa N, BARS Study Group and Getting to Zero IL Research Evaluation and Data (RED) Committee. A modeling framework to inform preexposure prophylaxis initiation and retention scale-up in the context of 'Getting to Zero' initiatives. AIDS. 2019 10 01; 33(12):1911-1922. PMID: 31490212; PMCID: PMC6760326.
      Citations: 14     Fields:    Translation:HumansPHPublic Health
    35. Ozik J, Collier N, Heiland R, An G, Macklin P. Learning-accelerated discovery of immune-tumour interactions. Mol Syst Des Eng. 2019 Aug 01; 4(4):747-760. PMID: 31497314; PMCID: PMC6690424.
      Citations: 12     
    36. Echevarria D, Gutfraind A, Boodram B, Layden J, Ozik J, Page K, Cotler SJ, Major M, Dahari H. Modeling indicates efficient vaccine-based interventions for the elimination of hepatitis C virus among persons who inject drugs in metropolitan Chicago. Vaccine. 2019 05 01; 37(19):2608-2616. PMID: 30962092; PMCID: PMC6552658.
      Citations: 7     Fields:    Translation:HumansCellsPHPublic Health
    37. Wozniak JM, Jain R, Balaprakash P, Ozik J, Collier NT, Bauer J, Xia F, Brettin T, Stevens R, Mohd-Yusof J, Cardona CG, Essen BV, Baughman M. CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research. BMC Bioinformatics. 2018 Dec 21; 19(Suppl 18):491. PMID: 30577736; PMCID: PMC6302440.
      Citations: 5     Fields:    Translation:Humans
    38. Ozik J, Collier N, Wozniak JM, Macal C, Cockrell C, Friedman SH, Ghaffarizadeh A, Heiland R, An G, Macklin P. High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow. BMC Bioinformatics. 2018 Dec 21; 19(Suppl 18):483. PMID: 30577742; PMCID: PMC6302449.
      Citations: 22     Fields:    Translation:Humans
    39. Ozik J, Collier NT, Wozniak JM, Macal C, An G. Extreme-scale Dynamic Exploration of a Distributed Agent-based Model with the EMEWS Framework. IEEE Trans Comput Soc Syst. 2018 Sep; 5(3):884-895. PMID: 30349868; PMCID: PMC6195352.
      Citations: 9     
    40. Ozik J, Collier NT, Wozniak JM, Spagnuolo C. FROM DESKTOP TO LARGE-SCALE MODEL EXPLORATION WITH SWIFT/T. Proc Winter Simul Conf. 2016 Dec; 2016:206-220. PMID: 31239603; PMCID: PMC6592281.
      Citations: 22     
    41. Ozik J, Hunt BR, Ott E. Formation of multifractal population patterns from reproductive growth and local resettlement. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Oct; 72(4 Pt 2):046213. PMID: 16383518.
      Citations:    Fields:    Translation:HumansAnimals
    42. Ozik J, Hunt BR, Ott E. Growing networks with geographical attachment preference: emergence of small worlds. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Feb; 69(2 Pt 2):026108. PMID: 14995521.
      Citations: 10     Fields:    
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